data_4J90 # _model_server_result.job_id DX6Y5YNwTDoz0d0Czn8tkA _model_server_result.datetime_utc '2024-10-13 22:19:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4j90 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 4J90 # _exptl.entry_id 4J90 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4J90 _cell.length_a 122.838 _cell.length_b 122.838 _cell.length_c 84.123 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4J90 _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 4J90 _atom_sites.fract_transf_matrix[1][1] 0.008141 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008141 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011887 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ATP A 1 601 601 ATP ATP . D 2 ATP B 1 301 602 ATP ATP . E 3 HOH A 1 701 1 HOH HOH . E 3 HOH A 2 702 2 HOH HOH . E 3 HOH A 3 703 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . C 2 20.883 -12.194 -11 1 96.34 ? PG ATP 601 A 1 HETATM 2 O O1G ATP . . . C 2 21.279 -10.841 -11.522 1 93.28 ? O1G ATP 601 A 1 HETATM 3 O O2G ATP . . . C 2 21.426 -12.536 -9.631 1 91.86 ? O2G ATP 601 A 1 HETATM 4 O O3G ATP . . . C 2 21.065 -13.276 -12.034 1 95.5 ? O3G ATP 601 A 1 HETATM 5 P PB ATP . . . C 2 18.292 -13.175 -10.278 1 94.83 ? PB ATP 601 A 1 HETATM 6 O O1B ATP . . . C 2 18.358 -14.35 -11.208 1 109.17 ? O1B ATP 601 A 1 HETATM 7 O O2B ATP . . . C 2 18.561 -13.447 -8.824 1 94.27 ? O2B ATP 601 A 1 HETATM 8 O O3B ATP . . . C 2 19.29 -12.018 -10.795 1 94.27 ? O3B ATP 601 A 1 HETATM 9 P PA ATP . . . C 2 15.97 -12.349 -11.818 1 98.58 ? PA ATP 601 A 1 HETATM 10 O O1A ATP . . . C 2 15.66 -10.891 -12.043 1 100.41 ? O1A ATP 601 A 1 HETATM 11 O O2A ATP . . . C 2 14.826 -13.333 -11.717 1 91.59 ? O2A ATP 601 A 1 HETATM 12 O O3A ATP . . . C 2 16.848 -12.478 -10.457 1 94.41 ? O3A ATP 601 A 1 HETATM 13 O O5' ATP . . . C 2 16.89 -12.732 -13.075 1 96.38 ? O5' ATP 601 A 1 HETATM 14 C C5' ATP . . . C 2 16.403 -13.689 -14.002 1 92.2 ? C5' ATP 601 A 1 HETATM 15 C C4' ATP . . . C 2 16.249 -13.145 -15.412 1 91.93 ? C4' ATP 601 A 1 HETATM 16 O O4' ATP . . . C 2 15.335 -14.008 -16.084 1 101.45 ? O4' ATP 601 A 1 HETATM 17 C C3' ATP . . . C 2 15.662 -11.757 -15.531 1 92.33 ? C3' ATP 601 A 1 HETATM 18 O O3' ATP . . . C 2 16.443 -11.084 -16.519 1 93.77 ? O3' ATP 601 A 1 HETATM 19 C C2' ATP . . . C 2 14.245 -11.953 -16.041 1 94.21 ? C2' ATP 601 A 1 HETATM 20 O O2' ATP . . . C 2 13.858 -10.939 -16.971 1 99.9 ? O2' ATP 601 A 1 HETATM 21 C C1' ATP . . . C 2 14.299 -13.29 -16.744 1 95.22 ? C1' ATP 601 A 1 HETATM 22 N N9 ATP . . . C 2 13.042 -14.07 -16.65 1 95.04 ? N9 ATP 601 A 1 HETATM 23 C C8 ATP . . . C 2 12.27 -14.216 -15.564 1 98.16 ? C8 ATP 601 A 1 HETATM 24 N N7 ATP . . . C 2 11.202 -15.009 -15.828 1 102.26 ? N7 ATP 601 A 1 HETATM 25 C C5 ATP . . . C 2 11.284 -15.395 -17.109 1 97.23 ? C5 ATP 601 A 1 HETATM 26 C C6 ATP . . . C 2 10.482 -16.241 -18.027 1 95.88 ? C6 ATP 601 A 1 HETATM 27 N N6 ATP . . . C 2 9.344 -16.852 -17.625 1 99.93 ? N6 ATP 601 A 1 HETATM 28 N N1 ATP . . . C 2 10.928 -16.386 -19.29 1 95.41 ? N1 ATP 601 A 1 HETATM 29 C C2 ATP . . . C 2 12.06 -15.79 -19.712 1 95.79 ? C2 ATP 601 A 1 HETATM 30 N N3 ATP . . . C 2 12.833 -15.008 -18.937 1 94.82 ? N3 ATP 601 A 1 HETATM 31 C C4 ATP . . . C 2 12.506 -14.777 -17.644 1 95.37 ? C4 ATP 601 A 1 # _model_server_stats.io_time_ms 72 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #