data_4J95
#
_model_server_result.job_id            XgUmQpHFYCsMsbuSpM8f_A 
_model_server_result.datetime_utc      '2024-10-12 13:26:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4j95 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":801}' 
#
_entry.id    4J95 
#
_exptl.entry_id    4J95 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              505.208 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          101.9 
_cell.angle_gamma         90 
_cell.entry_id            4J95 
_cell.length_a            278.634 
_cell.length_b            78.122 
_cell.length_c            72.791 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4J95 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
PISA dimeric 2 software_defined_assembly 5 
PISA dimeric 2 software_defined_assembly 6 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,G,P 1 1 
B,H,I,Q 2 1 
C,J,K,L,M,R 3 1 
D,N,O,S 4 1 
A,B,E,F,G,H,I,P,Q 5 1 
C,D,J,K,L,M,N,O,R,S 6 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 H N N 
? 2 J N N 
? 2 N N N 
#
_chem_comp.formula           'C11 H18 N5 O12 P3' 
_chem_comp.formula_weight    505.208 
_chem_comp.id                ACP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "ADENOSINE-5'-[BETA, GAMMA-METHYLENE]TRIPHOSPHATE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ACP doub 1 n n 
PG O2G ACP sing 2 n n 
PG O3G ACP sing 3 n n 
PG C3B ACP sing 4 n n 
O2G HOG2 ACP sing 5 n n 
O3G HOG3 ACP sing 6 n n 
PB O1B ACP doub 7 n n 
PB O2B ACP sing 8 n n 
PB C3B ACP sing 9 n n 
PB O3A ACP sing 10 n n 
O2B HOB2 ACP sing 11 n n 
C3B H3B1 ACP sing 12 n n 
C3B H3B2 ACP sing 13 n n 
PA O1A ACP doub 14 n n 
PA O2A ACP sing 15 n n 
PA O3A ACP sing 16 n n 
PA O5' ACP sing 17 n n 
O2A HOA2 ACP sing 18 n n 
O5' C5' ACP sing 19 n n 
C5' C4' ACP sing 20 n n 
C5' "H5'1" ACP sing 21 n n 
C5' "H5'2" ACP sing 22 n n 
C4' O4' ACP sing 23 n n 
C4' C3' ACP sing 24 n n 
C4' H4' ACP sing 25 n n 
O4' C1' ACP sing 26 n n 
C3' O3' ACP sing 27 n n 
C3' C2' ACP sing 28 n n 
C3' H3' ACP sing 29 n n 
O3' HO3' ACP sing 30 n n 
C2' O2' ACP sing 31 n n 
C2' C1' ACP sing 32 n n 
C2' H2' ACP sing 33 n n 
O2' HO2' ACP sing 34 n n 
C1' N9 ACP sing 35 n n 
C1' H1' ACP sing 36 n n 
N9 C8 ACP sing 37 n y 
N9 C4 ACP sing 38 n y 
C8 N7 ACP doub 39 n y 
C8 H8 ACP sing 40 n n 
N7 C5 ACP sing 41 n y 
C5 C6 ACP sing 42 n y 
C5 C4 ACP doub 43 n y 
C6 N6 ACP sing 44 n n 
C6 N1 ACP doub 45 n y 
N6 HN61 ACP sing 46 n n 
N6 HN62 ACP sing 47 n n 
N1 C2 ACP sing 48 n y 
C2 N3 ACP doub 49 n y 
C2 H2 ACP sing 50 n n 
N3 C4 ACP sing 51 n y 
#
_atom_sites.entry_id                     4J95 
_atom_sites.fract_transf_matrix[1][1]    0.003589 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000756 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.0128 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01404 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 ACP A 1 801 801 ACP ACP . 
F 3 SO4 A 1 802 802 SO4 SO4 . 
G 3 SO4 A 1 803 1 SO4 SO4 . 
H 2 ACP B 1 801 801 ACP ACP . 
I 3 SO4 B 1 802 802 SO4 SO4 . 
J 2 ACP C 1 801 801 ACP ACP . 
K 3 SO4 C 1 802 802 SO4 SO4 . 
L 3 SO4 C 1 803 2 SO4 SO4 . 
M 3 SO4 C 1 804 3 SO4 SO4 . 
N 2 ACP D 1 801 801 ACP ACP . 
O 3 SO4 D 1 802 802 SO4 SO4 . 
P 4 HOH A 1 901 901 HOH HOH . 
P 4 HOH A 2 902 902 HOH HOH . 
P 4 HOH A 3 903 903 HOH HOH . 
P 4 HOH A 4 904 904 HOH HOH . 
P 4 HOH A 5 905 905 HOH HOH . 
P 4 HOH A 6 906 906 HOH HOH . 
P 4 HOH A 7 907 907 HOH HOH . 
P 4 HOH A 8 908 908 HOH HOH . 
P 4 HOH A 9 909 909 HOH HOH . 
P 4 HOH A 10 910 910 HOH HOH . 
P 4 HOH A 11 911 911 HOH HOH . 
P 4 HOH A 12 912 912 HOH HOH . 
P 4 HOH A 13 913 913 HOH HOH . 
P 4 HOH A 14 914 914 HOH HOH . 
P 4 HOH A 15 915 915 HOH HOH . 
P 4 HOH A 16 916 916 HOH HOH . 
P 4 HOH A 17 917 917 HOH HOH . 
P 4 HOH A 18 918 918 HOH HOH . 
P 4 HOH A 19 919 919 HOH HOH . 
P 4 HOH A 20 920 920 HOH HOH . 
P 4 HOH A 21 921 921 HOH HOH . 
P 4 HOH A 22 922 922 HOH HOH . 
P 4 HOH A 23 923 923 HOH HOH . 
P 4 HOH A 24 924 924 HOH HOH . 
P 4 HOH A 25 925 925 HOH HOH . 
P 4 HOH A 26 926 926 HOH HOH . 
P 4 HOH A 27 927 927 HOH HOH . 
P 4 HOH A 28 928 928 HOH HOH . 
P 4 HOH A 29 929 929 HOH HOH . 
P 4 HOH A 30 930 930 HOH HOH . 
P 4 HOH A 31 931 931 HOH HOH . 
P 4 HOH A 32 932 932 HOH HOH . 
P 4 HOH A 33 933 933 HOH HOH . 
P 4 HOH A 34 934 934 HOH HOH . 
P 4 HOH A 35 935 935 HOH HOH . 
P 4 HOH A 36 936 936 HOH HOH . 
P 4 HOH A 37 937 937 HOH HOH . 
P 4 HOH A 38 938 938 HOH HOH . 
Q 4 HOH B 1 901 939 HOH HOH . 
Q 4 HOH B 2 902 901 HOH HOH . 
Q 4 HOH B 3 903 902 HOH HOH . 
Q 4 HOH B 4 904 903 HOH HOH . 
Q 4 HOH B 5 905 904 HOH HOH . 
Q 4 HOH B 6 906 905 HOH HOH . 
Q 4 HOH B 7 907 906 HOH HOH . 
Q 4 HOH B 8 908 907 HOH HOH . 
Q 4 HOH B 9 909 908 HOH HOH . 
Q 4 HOH B 10 910 909 HOH HOH . 
Q 4 HOH B 11 911 910 HOH HOH . 
Q 4 HOH B 12 912 911 HOH HOH . 
Q 4 HOH B 13 913 912 HOH HOH . 
Q 4 HOH B 14 914 913 HOH HOH . 
Q 4 HOH B 15 915 914 HOH HOH . 
Q 4 HOH B 16 916 915 HOH HOH . 
Q 4 HOH B 17 917 916 HOH HOH . 
Q 4 HOH B 18 918 917 HOH HOH . 
Q 4 HOH B 19 919 918 HOH HOH . 
Q 4 HOH B 20 920 919 HOH HOH . 
Q 4 HOH B 21 921 920 HOH HOH . 
Q 4 HOH B 22 922 921 HOH HOH . 
Q 4 HOH B 23 923 922 HOH HOH . 
Q 4 HOH B 24 924 923 HOH HOH . 
Q 4 HOH B 25 925 924 HOH HOH . 
Q 4 HOH B 26 926 925 HOH HOH . 
Q 4 HOH B 27 927 926 HOH HOH . 
Q 4 HOH B 28 928 927 HOH HOH . 
Q 4 HOH B 29 929 928 HOH HOH . 
Q 4 HOH B 30 930 929 HOH HOH . 
Q 4 HOH B 31 931 930 HOH HOH . 
Q 4 HOH B 32 932 931 HOH HOH . 
Q 4 HOH B 33 933 932 HOH HOH . 
Q 4 HOH B 34 934 933 HOH HOH . 
Q 4 HOH B 35 935 934 HOH HOH . 
Q 4 HOH B 36 936 935 HOH HOH . 
Q 4 HOH B 37 937 937 HOH HOH . 
R 4 HOH C 1 901 901 HOH HOH . 
R 4 HOH C 2 902 902 HOH HOH . 
R 4 HOH C 3 903 903 HOH HOH . 
R 4 HOH C 4 904 905 HOH HOH . 
R 4 HOH C 5 905 906 HOH HOH . 
R 4 HOH C 6 906 907 HOH HOH . 
R 4 HOH C 7 907 909 HOH HOH . 
R 4 HOH C 8 908 910 HOH HOH . 
R 4 HOH C 9 909 911 HOH HOH . 
R 4 HOH C 10 910 912 HOH HOH . 
R 4 HOH C 11 911 913 HOH HOH . 
R 4 HOH C 12 912 914 HOH HOH . 
R 4 HOH C 13 913 916 HOH HOH . 
R 4 HOH C 14 914 917 HOH HOH . 
R 4 HOH C 15 915 918 HOH HOH . 
R 4 HOH C 16 916 920 HOH HOH . 
R 4 HOH C 17 917 921 HOH HOH . 
R 4 HOH C 18 918 1 HOH HOH . 
R 4 HOH C 19 919 2 HOH HOH . 
S 4 HOH D 1 901 904 HOH HOH . 
S 4 HOH D 2 902 915 HOH HOH . 
S 4 HOH D 3 903 919 HOH HOH . 
S 4 HOH D 4 904 901 HOH HOH . 
S 4 HOH D 5 905 902 HOH HOH . 
S 4 HOH D 6 906 903 HOH HOH . 
S 4 HOH D 7 907 904 HOH HOH . 
S 4 HOH D 8 908 905 HOH HOH . 
S 4 HOH D 9 909 906 HOH HOH . 
S 4 HOH D 10 910 907 HOH HOH . 
S 4 HOH D 11 911 909 HOH HOH . 
S 4 HOH D 12 912 911 HOH HOH . 
S 4 HOH D 13 913 913 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ACP . . . N 2 40.86 40.238 -1.781 1 136.24 ? PG ACP 801 D 1 
HETATM 2 O O1G ACP . . . N 2 42.204 39.886 -1.228 1 136.3 ? O1G ACP 801 D 1 
HETATM 3 O O2G ACP . . . N 2 40.852 41.741 -2.229 1 149.81 ? O2G ACP 801 D 1 
HETATM 4 O O3G ACP . . . N 2 39.771 40.021 -0.68 1 106 ? O3G ACP 801 D 1 
HETATM 5 P PB ACP . . . N 2 38.702 38.924 -3.395 1 140.52 ? PB ACP 801 D 1 
HETATM 6 O O1B ACP . . . N 2 37.985 40.217 -3.12 1 139.16 ? O1B ACP 801 D 1 
HETATM 7 O O2B ACP . . . N 2 38.238 37.843 -2.362 1 108.87 ? O2B ACP 801 D 1 
HETATM 8 C C3B ACP . . . N 2 40.521 39.164 -3.237 1 53.64 ? C3B ACP 801 D 1 
HETATM 9 P PA ACP . . . N 2 37.097 37.597 -5.183 1 112.71 ? PA ACP 801 D 1 
HETATM 10 O O1A ACP . . . N 2 36.514 38.045 -6.498 1 111.94 ? O1A ACP 801 D 1 
HETATM 11 O O2A ACP . . . N 2 36.075 37.821 -4.085 1 108.32 ? O2A ACP 801 D 1 
HETATM 12 O O3A ACP . . . N 2 38.4 38.443 -4.876 1 190.42 ? O3A ACP 801 D 1 
HETATM 13 O O5' ACP . . . N 2 37.484 36.035 -5.293 1 87.38 ? O5' ACP 801 D 1 
HETATM 14 C C5' ACP . . . N 2 37.911 35.312 -4.159 1 83.86 ? C5' ACP 801 D 1 
HETATM 15 C C4' ACP . . . N 2 38.366 33.946 -4.506 1 81.07 ? C4' ACP 801 D 1 
HETATM 16 O O4' ACP . . . N 2 37.288 32.981 -4.215 1 76.45 ? O4' ACP 801 D 1 
HETATM 17 C C3' ACP . . . N 2 38.719 33.804 -5.913 1 83.95 ? C3' ACP 801 D 1 
HETATM 18 O O3' ACP . . . N 2 39.887 32.991 -6.054 1 86.11 ? O3' ACP 801 D 1 
HETATM 19 C C2' ACP . . . N 2 37.61 33.189 -6.568 1 82.42 ? C2' ACP 801 D 1 
HETATM 20 O O2' ACP . . . N 2 38.073 32.224 -7.533 1 84 ? O2' ACP 801 D 1 
HETATM 21 C C1' ACP . . . N 2 36.791 32.553 -5.551 1 75.47 ? C1' ACP 801 D 1 
HETATM 22 N N9 ACP . . . N 2 35.445 32.901 -5.725 1 67.28 ? N9 ACP 801 D 1 
HETATM 23 C C8 ACP . . . N 2 34.848 34.055 -5.388 1 61.66 ? C8 ACP 801 D 1 
HETATM 24 N N7 ACP . . . N 2 33.557 34.016 -5.711 1 56.61 ? N7 ACP 801 D 1 
HETATM 25 C C5 ACP . . . N 2 33.279 32.841 -6.268 1 58.61 ? C5 ACP 801 D 1 
HETATM 26 C C6 ACP . . . N 2 32.119 32.257 -6.794 1 58.92 ? C6 ACP 801 D 1 
HETATM 27 N N6 ACP . . . N 2 30.866 32.997 -6.789 1 59.3 ? N6 ACP 801 D 1 
HETATM 28 N N1 ACP . . . N 2 32.164 31.015 -7.3 1 56.38 ? N1 ACP 801 D 1 
HETATM 29 C C2 ACP . . . N 2 33.321 30.305 -7.318 1 57.82 ? C2 ACP 801 D 1 
HETATM 30 N N3 ACP . . . N 2 34.469 30.842 -6.816 1 59.12 ? N3 ACP 801 D 1 
HETATM 31 C C4 ACP . . . N 2 34.478 32.097 -6.293 1 61.27 ? C4 ACP 801 D 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           31 
#