data_4J9A # _model_server_result.job_id SVPE7mH0TEOsAcFDIRXuRg _model_server_result.datetime_utc '2024-11-15 07:18:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4j9a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":201}' # _entry.id 4J9A # _exptl.entry_id 4J9A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 390.513 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DIGOXIGENIN _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.68 _cell.angle_gamma 90 _cell.entry_id 4J9A _cell.length_a 132.793 _cell.length_b 90.993 _cell.length_c 110.075 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4J9A _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 ? monomeric 1 author_defined_assembly 5 ? monomeric 1 author_defined_assembly 6 ? monomeric 1 author_defined_assembly 7 ? monomeric 1 author_defined_assembly 8 ? monomeric 1 author_defined_assembly 9 PISA dimeric 2 software_defined_assembly 10 PISA dimeric 2 software_defined_assembly 11 PISA dimeric 2 software_defined_assembly 12 PISA dimeric 2 software_defined_assembly 13 PISA dimeric 2 software_defined_assembly 14 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,J 1 1 B,K 2 1 C,L 3 1 D,M 4 1 E,N 5 1 F,O 6 1 G,P 7 1 H,Q 8 1 I,R 9 1 A,J 10 1,2 B,D,K,M 11 1 C,F,L,O 12 1 E,N 13 1 G,P 13 3 H,Q 14 1 I,R 14 4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 3 'crystal symmetry operation' 3_455 x-1/2,y+1/2,z 1 0 0 0 1 0 0 0 1 -66.3965 45.4965 0 4 'crystal symmetry operation' 4_446 -x-1/2,y-1/2,-z+1 -1 0 0 0 1 0 0 0 -1 -71.543361 -45.4965 109.954606 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N # _chem_comp.formula 'C23 H34 O5' _chem_comp.formula_weight 390.513 _chem_comp.id DOG _chem_comp.mon_nstd_flag . _chem_comp.name DIGOXIGENIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 4-(3,12,14-TRIHYDROXY-10,13-DIMETHYL-HEXADECAHYDRO-CYCLOPENTA[A]PHENANTHREN-17-YL)-5H-FURAN-2-ONE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O23 C23 DOG doub 83 n n C23 C22 DOG sing 84 n n C23 O21 DOG sing 85 n n C22 C20 DOG doub 86 n n C22 H22 DOG sing 87 n n O21 C21 DOG sing 88 n n C21 C20 DOG sing 89 n n C21 H211 DOG sing 90 n n C21 H212 DOG sing 91 n n C20 C17 DOG sing 92 n n C17 C16 DOG sing 93 n n C17 C13 DOG sing 94 n n C17 H17 DOG sing 95 n n C16 C15 DOG sing 96 n n C16 H161 DOG sing 97 n n C16 H162 DOG sing 98 n n C13 C18 DOG sing 99 n n C13 C12 DOG sing 100 n n C13 C14 DOG sing 101 n n C18 H181 DOG sing 102 n n C18 H182 DOG sing 103 n n C18 H183 DOG sing 104 n n C12 O12 DOG sing 105 n n C12 C11 DOG sing 106 n n C12 H12 DOG sing 107 n n O12 H12O DOG sing 108 n n C14 C15 DOG sing 109 n n C14 O14 DOG sing 110 n n C14 C8 DOG sing 111 n n C15 H151 DOG sing 112 n n C15 H152 DOG sing 113 n n O14 H14O DOG sing 114 n n C8 C7 DOG sing 115 n n C8 C9 DOG sing 116 n n C8 HC8 DOG sing 117 n n C7 C6 DOG sing 118 n n C7 HC71 DOG sing 119 n n C7 HC72 DOG sing 120 n n C9 C11 DOG sing 121 n n C9 C10 DOG sing 122 n n C9 HC9 DOG sing 123 n n C11 H111 DOG sing 124 n n C11 H112 DOG sing 125 n n C10 C19 DOG sing 126 n n C10 C5 DOG sing 127 n n C10 C1 DOG sing 128 n n C19 H191 DOG sing 129 n n C19 H192 DOG sing 130 n n C19 H193 DOG sing 131 n n C5 C6 DOG sing 132 n n C5 C4 DOG sing 133 n n C5 HC5 DOG sing 134 n n C6 HC61 DOG sing 135 n n C6 HC62 DOG sing 136 n n C4 C3 DOG sing 137 n n C4 HC41 DOG sing 138 n n C4 HC42 DOG sing 139 n n C3 O32 DOG sing 140 n n C3 C2 DOG sing 141 n n C3 HC3 DOG sing 142 n n O32 H32O DOG sing 143 n n C2 C1 DOG sing 144 n n C2 HC21 DOG sing 145 n n C2 HC22 DOG sing 146 n n C1 HC11 DOG sing 147 n n C1 HC12 DOG sing 148 n n # _atom_sites.entry_id 4J9A _atom_sites.fract_transf_matrix[1][1] 0.007531 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000353 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01099 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009095 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code J 2 DOG A 1 201 1 DOG DOG . K 2 DOG B 1 201 2 DOG DOG . L 2 DOG C 1 201 3 DOG DOG . M 2 DOG D 1 201 4 DOG DOG . N 2 DOG E 1 201 5 DOG DOG . O 2 DOG F 1 201 6 DOG DOG . P 2 DOG G 1 201 7 DOG DOG . Q 2 DOG H 1 201 8 DOG DOG . R 2 DOG I 1 201 9 DOG DOG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O23 DOG . . . Q 2 -41.766 -30.928 54.706 1 53.55 ? O23 DOG 201 H 1 HETATM 2 C C23 DOG . . . Q 2 -41.819 -31.095 53.504 1 59.86 ? C23 DOG 201 H 1 HETATM 3 C C22 DOG . . . Q 2 -42.909 -30.808 52.532 1 58.59 ? C22 DOG 201 H 1 HETATM 4 O O21 DOG . . . Q 2 -40.722 -31.709 52.819 1 59.54 ? O21 DOG 201 H 1 HETATM 5 C C21 DOG . . . Q 2 -41.116 -31.902 51.452 1 63.45 ? C21 DOG 201 H 1 HETATM 6 C C20 DOG . . . Q 2 -42.507 -31.286 51.341 1 63.57 ? C20 DOG 201 H 1 HETATM 7 C C17 DOG . . . Q 2 -43.298 -31.236 50.051 1 66.72 ? C17 DOG 201 H 1 HETATM 8 C C16 DOG . . . Q 2 -42.454 -30.704 48.888 1 69.71 ? C16 DOG 201 H 1 HETATM 9 C C13 DOG . . . Q 2 -43.84 -32.56 49.489 1 65.57 ? C13 DOG 201 H 1 HETATM 10 C C18 DOG . . . Q 2 -44.045 -33.665 50.521 1 65.1 ? C18 DOG 201 H 1 HETATM 11 C C12 DOG . . . Q 2 -45.138 -32.155 48.769 1 68.04 ? C12 DOG 201 H 1 HETATM 12 O O12 DOG . . . Q 2 -46.207 -31.914 49.689 1 67.37 ? O12 DOG 201 H 1 HETATM 13 C C14 DOG . . . Q 2 -42.807 -33.026 48.483 1 65.05 ? C14 DOG 201 H 1 HETATM 14 C C15 DOG . . . Q 2 -42.375 -31.769 47.8 1 66.73 ? C15 DOG 201 H 1 HETATM 15 O O14 DOG . . . Q 2 -41.633 -33.431 49.173 1 58.91 ? O14 DOG 201 H 1 HETATM 16 C C8 DOG . . . Q 2 -43.315 -34.134 47.543 1 70.58 ? C8 DOG 201 H 1 HETATM 17 C C7 DOG . . . Q 2 -42.371 -34.46 46.379 1 72.75 ? C7 DOG 201 H 1 HETATM 18 C C9 DOG . . . Q 2 -44.702 -33.87 46.925 1 76.56 ? C9 DOG 201 H 1 HETATM 19 C C11 DOG . . . Q 2 -45.705 -33.203 47.853 1 73.1 ? C11 DOG 201 H 1 HETATM 20 C C10 DOG . . . Q 2 -45.287 -35.175 46.342 1 82.46 ? C10 DOG 201 H 1 HETATM 21 C C19 DOG . . . Q 2 -45.226 -36.323 47.362 1 85.3 ? C19 DOG 201 H 1 HETATM 22 C C5 DOG . . . Q 2 -44.45 -35.562 45.11 1 79.22 ? C5 DOG 201 H 1 HETATM 23 C C6 DOG . . . Q 2 -42.922 -35.495 45.372 1 77.4 ? C6 DOG 201 H 1 HETATM 24 C C4 DOG . . . Q 2 -44.822 -34.761 43.85 1 78.71 ? C4 DOG 201 H 1 HETATM 25 C C3 DOG . . . Q 2 -46.332 -34.657 43.551 1 78.44 ? C3 DOG 201 H 1 HETATM 26 O O32 DOG . . . Q 2 -46.946 -35.889 43.16 1 71.04 ? O32 DOG 201 H 1 HETATM 27 C C2 DOG . . . Q 2 -47.05 -34.148 44.787 1 77.14 ? C2 DOG 201 H 1 HETATM 28 C C1 DOG . . . Q 2 -46.787 -35.065 45.965 1 78.93 ? C1 DOG 201 H 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 28 #