data_4J9A
#
_model_server_result.job_id            5i6QYhkd5oSewQozsNZnHg 
_model_server_result.datetime_utc      '2024-11-15 07:28:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4j9a 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"R","auth_seq_id":201}' 
#
_entry.id    4J9A 
#
_exptl.entry_id    4J9A 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              390.513 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DIGOXIGENIN 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          92.68 
_cell.angle_gamma         90 
_cell.entry_id            4J9A 
_cell.length_a            132.793 
_cell.length_b            90.993 
_cell.length_c            110.075 
_cell.Z_PDB               36 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4J9A 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
? monomeric 1 author_defined_assembly 5 
? monomeric 1 author_defined_assembly 6 
? monomeric 1 author_defined_assembly 7 
? monomeric 1 author_defined_assembly 8 
? monomeric 1 author_defined_assembly 9 
PISA dimeric 2 software_defined_assembly 10 
PISA dimeric 2 software_defined_assembly 11 
PISA dimeric 2 software_defined_assembly 12 
PISA dimeric 2 software_defined_assembly 13 
PISA dimeric 2 software_defined_assembly 14 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,J 1 1 
B,K 2 1 
C,L 3 1 
D,M 4 1 
E,N 5 1 
F,O 6 1 
G,P 7 1 
H,Q 8 1 
I,R 9 1 
A,J 10 1,2 
B,D,K,M 11 1 
C,F,L,O 12 1 
E,N 13 1 
G,P 13 3 
H,Q 14 1 
I,R 14 4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
3 'crystal symmetry operation' 3_455 x-1/2,y+1/2,z 1 0 0 0 1 0 0 0 1 -66.3965 45.4965 0 
4 'crystal symmetry operation' 4_446 -x-1/2,y-1/2,-z+1 -1 0 0 0 1 0 0 0 -1 -71.543361 -45.4965 109.954606 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
? 2 Q N N 
? 2 R N N 
#
_chem_comp.formula           'C23 H34 O5' 
_chem_comp.formula_weight    390.513 
_chem_comp.id                DOG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DIGOXIGENIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     4-(3,12,14-TRIHYDROXY-10,13-DIMETHYL-HEXADECAHYDRO-CYCLOPENTA[A]PHENANTHREN-17-YL)-5H-FURAN-2-ONE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O23 C23 DOG doub 83 n n 
C23 C22 DOG sing 84 n n 
C23 O21 DOG sing 85 n n 
C22 C20 DOG doub 86 n n 
C22 H22 DOG sing 87 n n 
O21 C21 DOG sing 88 n n 
C21 C20 DOG sing 89 n n 
C21 H211 DOG sing 90 n n 
C21 H212 DOG sing 91 n n 
C20 C17 DOG sing 92 n n 
C17 C16 DOG sing 93 n n 
C17 C13 DOG sing 94 n n 
C17 H17 DOG sing 95 n n 
C16 C15 DOG sing 96 n n 
C16 H161 DOG sing 97 n n 
C16 H162 DOG sing 98 n n 
C13 C18 DOG sing 99 n n 
C13 C12 DOG sing 100 n n 
C13 C14 DOG sing 101 n n 
C18 H181 DOG sing 102 n n 
C18 H182 DOG sing 103 n n 
C18 H183 DOG sing 104 n n 
C12 O12 DOG sing 105 n n 
C12 C11 DOG sing 106 n n 
C12 H12 DOG sing 107 n n 
O12 H12O DOG sing 108 n n 
C14 C15 DOG sing 109 n n 
C14 O14 DOG sing 110 n n 
C14 C8 DOG sing 111 n n 
C15 H151 DOG sing 112 n n 
C15 H152 DOG sing 113 n n 
O14 H14O DOG sing 114 n n 
C8 C7 DOG sing 115 n n 
C8 C9 DOG sing 116 n n 
C8 HC8 DOG sing 117 n n 
C7 C6 DOG sing 118 n n 
C7 HC71 DOG sing 119 n n 
C7 HC72 DOG sing 120 n n 
C9 C11 DOG sing 121 n n 
C9 C10 DOG sing 122 n n 
C9 HC9 DOG sing 123 n n 
C11 H111 DOG sing 124 n n 
C11 H112 DOG sing 125 n n 
C10 C19 DOG sing 126 n n 
C10 C5 DOG sing 127 n n 
C10 C1 DOG sing 128 n n 
C19 H191 DOG sing 129 n n 
C19 H192 DOG sing 130 n n 
C19 H193 DOG sing 131 n n 
C5 C6 DOG sing 132 n n 
C5 C4 DOG sing 133 n n 
C5 HC5 DOG sing 134 n n 
C6 HC61 DOG sing 135 n n 
C6 HC62 DOG sing 136 n n 
C4 C3 DOG sing 137 n n 
C4 HC41 DOG sing 138 n n 
C4 HC42 DOG sing 139 n n 
C3 O32 DOG sing 140 n n 
C3 C2 DOG sing 141 n n 
C3 HC3 DOG sing 142 n n 
O32 H32O DOG sing 143 n n 
C2 C1 DOG sing 144 n n 
C2 HC21 DOG sing 145 n n 
C2 HC22 DOG sing 146 n n 
C1 HC11 DOG sing 147 n n 
C1 HC12 DOG sing 148 n n 
#
_atom_sites.entry_id                     4J9A 
_atom_sites.fract_transf_matrix[1][1]    0.007531 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000353 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01099 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009095 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
J 2 DOG A 1 201 1 DOG DOG . 
K 2 DOG B 1 201 2 DOG DOG . 
L 2 DOG C 1 201 3 DOG DOG . 
M 2 DOG D 1 201 4 DOG DOG . 
N 2 DOG E 1 201 5 DOG DOG . 
O 2 DOG F 1 201 6 DOG DOG . 
P 2 DOG G 1 201 7 DOG DOG . 
Q 2 DOG H 1 201 8 DOG DOG . 
R 2 DOG I 1 201 9 DOG DOG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O23 DOG . . . R 2 -13.366 -0.932 43.323 1 51.91 ? O23 DOG 201 I 1 
HETATM 2 C C23 DOG . . . R 2 -12.457 -1.272 44.031 1 56.08 ? C23 DOG 201 I 1 
HETATM 3 C C22 DOG . . . R 2 -12.489 -2.037 45.273 1 59.87 ? C22 DOG 201 I 1 
HETATM 4 O O21 DOG . . . R 2 -11.102 -0.924 43.755 1 60.63 ? O21 DOG 201 I 1 
HETATM 5 C C21 DOG . . . R 2 -10.281 -1.326 44.853 1 60.83 ? C21 DOG 201 I 1 
HETATM 6 C C20 DOG . . . R 2 -11.228 -2.114 45.729 1 61.83 ? C20 DOG 201 I 1 
HETATM 7 C C17 DOG . . . R 2 -10.798 -2.921 46.929 1 60.1 ? C17 DOG 201 I 1 
HETATM 8 C C16 DOG . . . R 2 -9.586 -3.783 46.65 1 58.25 ? C16 DOG 201 I 1 
HETATM 9 C C13 DOG . . . R 2 -10.364 -2.105 48.134 1 61 ? C13 DOG 201 I 1 
HETATM 10 C C18 DOG . . . R 2 -11.005 -0.704 48.179 1 66.62 ? C18 DOG 201 I 1 
HETATM 11 C C12 DOG . . . R 2 -10.79 -3.022 49.257 1 55.34 ? C12 DOG 201 I 1 
HETATM 12 O O12 DOG . . . R 2 -12.196 -2.867 49.319 1 56.39 ? O12 DOG 201 I 1 
HETATM 13 C C14 DOG . . . R 2 -8.844 -1.988 48.095 1 60.07 ? C14 DOG 201 I 1 
HETATM 14 C C15 DOG . . . R 2 -8.43 -3.312 47.515 1 57.26 ? C15 DOG 201 I 1 
HETATM 15 O O14 DOG . . . R 2 -8.391 -0.915 47.238 1 54.65 ? O14 DOG 201 I 1 
HETATM 16 C C8 DOG . . . R 2 -8.236 -1.696 49.459 1 63.47 ? C8 DOG 201 I 1 
HETATM 17 C C7 DOG . . . R 2 -6.714 -1.623 49.361 1 65.13 ? C7 DOG 201 I 1 
HETATM 18 C C9 DOG . . . R 2 -8.705 -2.657 50.551 1 65.99 ? C9 DOG 201 I 1 
HETATM 19 C C11 DOG . . . R 2 -10.226 -2.657 50.596 1 61.14 ? C11 DOG 201 I 1 
HETATM 20 C C10 DOG . . . R 2 -8.071 -2.343 51.93 1 70.12 ? C10 DOG 201 I 1 
HETATM 21 C C19 DOG . . . R 2 -8.583 -1.03 52.542 1 62.08 ? C19 DOG 201 I 1 
HETATM 22 C C5 DOG . . . R 2 -6.534 -2.293 51.791 1 68.99 ? C5 DOG 201 I 1 
HETATM 23 C C6 DOG . . . R 2 -6.091 -1.315 50.712 1 67.76 ? C6 DOG 201 I 1 
HETATM 24 C C4 DOG . . . R 2 -5.871 -3.655 51.504 1 66.61 ? C4 DOG 201 I 1 
HETATM 25 C C3 DOG . . . R 2 -6.26 -4.65 52.593 1 74.03 ? C3 DOG 201 I 1 
HETATM 26 O O32 DOG . . . R 2 -5.815 -4.229 53.897 1 75.48 ? O32 DOG 201 I 1 
HETATM 27 C C2 DOG . . . R 2 -7.787 -4.785 52.641 1 75.24 ? C2 DOG 201 I 1 
HETATM 28 C C1 DOG . . . R 2 -8.44 -3.437 52.952 1 74.84 ? C1 DOG 201 I 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           248 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           28 
#