data_4J9I
#
_model_server_result.job_id            NGekVQHvF5dMhrTj8w-cLQ 
_model_server_result.datetime_utc      '2024-10-12 11:13:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4j9i 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":201}' 
#
_entry.id    4J9I 
#
_exptl.entry_id    4J9I 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4J9I 
_cell.length_a            88.029 
_cell.length_b            88.029 
_cell.length_c            45.801 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4J9I 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,I,J 1 1 
C,D,K,L 2 1 
E,F,G,H,M,N 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C ACE 1 B ACE 0 1_555 B N ALA 2 B ALA 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale2 D C ACE 1 D ACE 0 1_555 D N ALA 2 D ALA 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale3 F C ACE 1 F ACE 0 1_555 F N ALA 2 F ALA 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 135 n n 
C1 C2 GOL sing 136 n n 
C1 H11 GOL sing 137 n n 
C1 H12 GOL sing 138 n n 
O1 HO1 GOL sing 139 n n 
C2 O2 GOL sing 140 n n 
C2 C3 GOL sing 141 n n 
C2 H2 GOL sing 142 n n 
O2 HO2 GOL sing 143 n n 
C3 O3 GOL sing 144 n n 
C3 H31 GOL sing 145 n n 
C3 H32 GOL sing 146 n n 
O3 HO3 GOL sing 147 n n 
#
_atom_sites.entry_id                     4J9I 
_atom_sites.fract_transf_matrix[1][1]    0.01136 
_atom_sites.fract_transf_matrix[1][2]    0.006559 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013117 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.021834 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 3 GOL E 1 201 1 GOL GOL . 
H 3 GOL E 1 202 1 GOL GOL . 
I 4 HOH A 1 201 2 HOH HOH . 
I 4 HOH A 2 202 202 HOH HOH . 
I 4 HOH A 3 203 5 HOH HOH . 
I 4 HOH A 4 204 6 HOH HOH . 
I 4 HOH A 5 205 10 HOH HOH . 
I 4 HOH A 6 206 12 HOH HOH . 
I 4 HOH A 7 207 16 HOH HOH . 
I 4 HOH A 8 208 18 HOH HOH . 
I 4 HOH A 9 209 21 HOH HOH . 
I 4 HOH A 10 210 23 HOH HOH . 
I 4 HOH A 11 211 24 HOH HOH . 
I 4 HOH A 12 212 27 HOH HOH . 
I 4 HOH A 13 213 31 HOH HOH . 
I 4 HOH A 14 214 37 HOH HOH . 
I 4 HOH A 15 215 41 HOH HOH . 
I 4 HOH A 16 216 46 HOH HOH . 
I 4 HOH A 17 217 47 HOH HOH . 
I 4 HOH A 18 218 48 HOH HOH . 
I 4 HOH A 19 219 55 HOH HOH . 
I 4 HOH A 20 220 63 HOH HOH . 
I 4 HOH A 21 221 72 HOH HOH . 
I 4 HOH A 22 222 79 HOH HOH . 
I 4 HOH A 23 223 81 HOH HOH . 
J 4 HOH B 1 101 70 HOH HOH . 
K 4 HOH C 1 201 4 HOH HOH . 
K 4 HOH C 2 202 7 HOH HOH . 
K 4 HOH C 3 203 11 HOH HOH . 
K 4 HOH C 4 204 13 HOH HOH . 
K 4 HOH C 5 205 14 HOH HOH . 
K 4 HOH C 6 206 15 HOH HOH . 
K 4 HOH C 7 207 25 HOH HOH . 
K 4 HOH C 8 208 28 HOH HOH . 
K 4 HOH C 9 209 29 HOH HOH . 
K 4 HOH C 10 210 36 HOH HOH . 
K 4 HOH C 11 211 39 HOH HOH . 
K 4 HOH C 12 212 42 HOH HOH . 
K 4 HOH C 13 213 50 HOH HOH . 
K 4 HOH C 14 214 59 HOH HOH . 
K 4 HOH C 15 215 61 HOH HOH . 
K 4 HOH C 16 216 71 HOH HOH . 
K 4 HOH C 17 217 73 HOH HOH . 
K 4 HOH C 18 218 74 HOH HOH . 
L 4 HOH D 1 101 65 HOH HOH . 
M 4 HOH E 1 301 1 HOH HOH . 
M 4 HOH E 2 302 17 HOH HOH . 
M 4 HOH E 3 303 19 HOH HOH . 
M 4 HOH E 4 304 20 HOH HOH . 
M 4 HOH E 5 305 22 HOH HOH . 
M 4 HOH E 6 306 26 HOH HOH . 
M 4 HOH E 7 307 32 HOH HOH . 
M 4 HOH E 8 308 33 HOH HOH . 
M 4 HOH E 9 309 34 HOH HOH . 
M 4 HOH E 10 310 38 HOH HOH . 
M 4 HOH E 11 311 40 HOH HOH . 
M 4 HOH E 12 312 43 HOH HOH . 
M 4 HOH E 13 313 45 HOH HOH . 
M 4 HOH E 14 314 51 HOH HOH . 
M 4 HOH E 15 315 52 HOH HOH . 
M 4 HOH E 16 316 53 HOH HOH . 
M 4 HOH E 17 317 54 HOH HOH . 
M 4 HOH E 18 318 57 HOH HOH . 
M 4 HOH E 19 319 62 HOH HOH . 
M 4 HOH E 20 320 64 HOH HOH . 
M 4 HOH E 21 321 66 HOH HOH . 
M 4 HOH E 22 322 68 HOH HOH . 
M 4 HOH E 23 323 77 HOH HOH . 
N 4 HOH F 1 101 44 HOH HOH . 
N 4 HOH F 2 102 60 HOH HOH . 
N 4 HOH F 3 103 80 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . G 3 21.811 19.678 -18.777 1 48.54 ? C1 GOL 201 E 1 
HETATM 2 O O1 GOL . . . G 3 22.153 20.586 -17.746 1 46.1 ? O1 GOL 201 E 1 
HETATM 3 C C2 GOL . . . G 3 22.862 18.571 -18.863 1 42.01 ? C2 GOL 201 E 1 
HETATM 4 O O2 GOL . . . G 3 22.386 17.437 -18.164 1 41.87 ? O2 GOL 201 E 1 
HETATM 5 C C3 GOL . . . G 3 23.238 18.24 -20.318 1 45.28 ? C3 GOL 201 E 1 
HETATM 6 O O3 GOL . . . G 3 22.869 16.918 -20.696 1 43.87 ? O3 GOL 201 E 1 
#
_model_server_stats.io_time_ms              59 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           308 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#