data_4J9O # _model_server_result.job_id NBBovVgNWwnC1AGxl84lQQ _model_server_result.datetime_utc '2024-11-22 03:42:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4j9o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":504}' # _entry.id 4J9O # _exptl.entry_id 4J9O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4J9O _cell.length_a 99.49 _cell.length_b 99.49 _cell.length_c 81.58 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4J9O _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 16 A ASP 13 1_555 D MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc2 A OD2 ASP 16 A ASP 13 1_555 E MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc3 A O MET 17 A MET 14 1_555 D MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc4 A OD2 ASP 118 A ASP 115 1_555 D MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc5 A OD1 ASP 118 A ASP 115 1_555 E MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc6 A OE1 GLU 119 A GLU 116 1_555 E MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc7 D MG MG . A MG 501 1_555 F O1B DZ4 . A DZ4 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc8 D MG MG . A MG 501 1_555 F O1A DZ4 . A DZ4 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc9 D MG MG . A MG 501 1_555 F O1G DZ4 . A DZ4 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc10 E MG MG . A MG 502 1_555 F O1A DZ4 . A DZ4 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc11 E MG MG . A MG 502 1_555 C O3' DG 9 P DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? hydrog TYPE_28_PAIR hydrog1 B N3 DT 5 T DT 5 1_555 C O6 DG 9 P DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_28_PAIR hydrog2 B O2 DT 5 T DT 5 1_555 C N1 DG 9 P DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B N1 DA 6 T DA 6 1_555 C N3 DT 8 P DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N6 DA 6 T DA 6 1_555 C O4 DT 8 P DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B N3 DT 7 T DT 7 1_555 C N1 DA 7 P DA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B O4 DT 7 T DT 7 1_555 C N6 DA 7 P DA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N1 DG 8 T DG 8 1_555 C N3 DC 6 P DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B N2 DG 8 T DG 8 1_555 C O2 DC 6 P DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B O6 DG 8 T DG 8 1_555 C N4 DC 6 P DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B N1 DA 9 T DA 9 1_555 C N3 DT 5 P DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B N6 DA 9 T DA 9 1_555 C O4 DT 5 P DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B N3 DC 10 T DC 10 1_555 C N1 DG 4 P DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B N4 DC 10 T DC 10 1_555 C O6 DG 4 P DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B O2 DC 10 T DC 10 1_555 C N2 DG 4 P DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B N1 DG 11 T DG 11 1_555 C N3 DC 3 P DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B N2 DG 11 T DG 11 1_555 C O2 DC 3 P DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B O6 DG 11 T DG 11 1_555 C N4 DC 3 P DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B N3 DT 12 T DT 12 1_555 C N1 DA 2 P DA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B O4 DT 12 T DT 12 1_555 C N6 DA 2 P DA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 336 n n C1 C2 GOL sing 337 n n C1 H11 GOL sing 338 n n C1 H12 GOL sing 339 n n O1 HO1 GOL sing 340 n n C2 O2 GOL sing 341 n n C2 C3 GOL sing 342 n n C2 H2 GOL sing 343 n n O2 HO2 GOL sing 344 n n C3 O3 GOL sing 345 n n C3 H31 GOL sing 346 n n C3 H32 GOL sing 347 n n O3 HO3 GOL sing 348 n n # _atom_sites.entry_id 4J9O _atom_sites.fract_transf_matrix[1][1] 0.010051 _atom_sites.fract_transf_matrix[1][2] 0.005803 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011606 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012258 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MG A 1 501 501 MG MG . E 4 MG A 1 502 502 MG MG . F 5 DZ4 A 1 503 503 DZ4 DZ4 . G 6 GOL A 1 504 504 GOL GOL . H 7 EDO A 1 505 506 EDO EDO . I 8 HOH A 1 601 601 HOH HOH . I 8 HOH A 2 602 602 HOH HOH . I 8 HOH A 3 603 603 HOH HOH . I 8 HOH A 4 604 604 HOH HOH . I 8 HOH A 5 605 605 HOH HOH . I 8 HOH A 6 606 606 HOH HOH . I 8 HOH A 7 607 607 HOH HOH . I 8 HOH A 8 608 608 HOH HOH . I 8 HOH A 9 609 609 HOH HOH . I 8 HOH A 10 610 610 HOH HOH . I 8 HOH A 11 611 611 HOH HOH . I 8 HOH A 12 612 612 HOH HOH . I 8 HOH A 13 613 613 HOH HOH . I 8 HOH A 14 614 614 HOH HOH . I 8 HOH A 15 615 615 HOH HOH . I 8 HOH A 16 616 616 HOH HOH . I 8 HOH A 17 617 617 HOH HOH . I 8 HOH A 18 618 618 HOH HOH . I 8 HOH A 19 619 619 HOH HOH . I 8 HOH A 20 620 620 HOH HOH . I 8 HOH A 21 621 621 HOH HOH . I 8 HOH A 22 622 622 HOH HOH . I 8 HOH A 23 623 623 HOH HOH . I 8 HOH A 24 624 624 HOH HOH . I 8 HOH A 25 625 625 HOH HOH . I 8 HOH A 26 626 626 HOH HOH . I 8 HOH A 27 627 627 HOH HOH . I 8 HOH A 28 628 628 HOH HOH . I 8 HOH A 29 629 629 HOH HOH . I 8 HOH A 30 630 630 HOH HOH . I 8 HOH A 31 631 631 HOH HOH . I 8 HOH A 32 632 632 HOH HOH . I 8 HOH A 33 633 633 HOH HOH . I 8 HOH A 34 634 634 HOH HOH . I 8 HOH A 35 635 635 HOH HOH . I 8 HOH A 36 636 636 HOH HOH . I 8 HOH A 37 637 637 HOH HOH . I 8 HOH A 38 638 638 HOH HOH . I 8 HOH A 39 639 639 HOH HOH . I 8 HOH A 40 640 640 HOH HOH . I 8 HOH A 41 641 641 HOH HOH . I 8 HOH A 42 642 642 HOH HOH . I 8 HOH A 43 643 643 HOH HOH . I 8 HOH A 44 644 644 HOH HOH . I 8 HOH A 45 645 645 HOH HOH . I 8 HOH A 46 646 646 HOH HOH . I 8 HOH A 47 647 647 HOH HOH . I 8 HOH A 48 648 648 HOH HOH . I 8 HOH A 49 649 649 HOH HOH . I 8 HOH A 50 650 650 HOH HOH . I 8 HOH A 51 651 651 HOH HOH . I 8 HOH A 52 652 652 HOH HOH . I 8 HOH A 53 653 653 HOH HOH . I 8 HOH A 54 654 654 HOH HOH . I 8 HOH A 55 655 655 HOH HOH . I 8 HOH A 56 656 656 HOH HOH . I 8 HOH A 57 657 657 HOH HOH . I 8 HOH A 58 658 658 HOH HOH . I 8 HOH A 59 659 659 HOH HOH . I 8 HOH A 60 660 660 HOH HOH . I 8 HOH A 61 661 661 HOH HOH . I 8 HOH A 62 662 662 HOH HOH . I 8 HOH A 63 663 663 HOH HOH . I 8 HOH A 64 664 664 HOH HOH . I 8 HOH A 65 665 665 HOH HOH . I 8 HOH A 66 666 666 HOH HOH . I 8 HOH A 67 667 667 HOH HOH . I 8 HOH A 68 668 668 HOH HOH . I 8 HOH A 69 669 669 HOH HOH . I 8 HOH A 70 670 670 HOH HOH . I 8 HOH A 71 671 671 HOH HOH . I 8 HOH A 72 672 672 HOH HOH . I 8 HOH A 73 673 673 HOH HOH . I 8 HOH A 74 674 674 HOH HOH . I 8 HOH A 75 675 675 HOH HOH . I 8 HOH A 76 676 676 HOH HOH . I 8 HOH A 77 677 677 HOH HOH . I 8 HOH A 78 678 678 HOH HOH . I 8 HOH A 79 679 679 HOH HOH . I 8 HOH A 80 680 680 HOH HOH . I 8 HOH A 81 681 681 HOH HOH . I 8 HOH A 82 682 682 HOH HOH . I 8 HOH A 83 683 683 HOH HOH . J 8 HOH T 1 101 101 HOH HOH . J 8 HOH T 2 102 102 HOH HOH . J 8 HOH T 3 103 103 HOH HOH . J 8 HOH T 4 104 104 HOH HOH . J 8 HOH T 5 105 105 HOH HOH . J 8 HOH T 6 106 106 HOH HOH . J 8 HOH T 7 107 107 HOH HOH . J 8 HOH T 8 108 108 HOH HOH . J 8 HOH T 9 109 109 HOH HOH . K 8 HOH P 1 101 101 HOH HOH . K 8 HOH P 2 102 102 HOH HOH . K 8 HOH P 3 103 103 HOH HOH . K 8 HOH P 4 104 104 HOH HOH . K 8 HOH P 5 105 105 HOH HOH . K 8 HOH P 6 106 106 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 6 -43.076 17.589 3.872 1 46.23 ? C1 GOL 504 A 1 HETATM 2 O O1 GOL . . . G 6 -42.57 17.894 2.569 1 46.09 ? O1 GOL 504 A 1 HETATM 3 C C2 GOL . . . G 6 -42.507 18.556 4.906 1 46.27 ? C2 GOL 504 A 1 HETATM 4 O O2 GOL . . . G 6 -42.978 18.179 6.199 1 51.26 ? O2 GOL 504 A 1 HETATM 5 C C3 GOL . . . G 6 -40.986 18.495 4.913 1 43.96 ? C3 GOL 504 A 1 HETATM 6 O O3 GOL . . . G 6 -40.482 19.282 5.998 1 46.65 ? O3 GOL 504 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #