data_4J9P # _model_server_result.job_id 7hwhbypjJ_VNcYHvGDmuWQ _model_server_result.datetime_utc '2024-11-06 04:44:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4j9p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 4J9P # _exptl.entry_id 4J9P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4J9P _cell.length_a 98.74 _cell.length_b 98.74 _cell.length_c 81.69 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4J9P _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog WATSON-CRICK hydrog1 B N3 DT 4 T DT 4 1_555 C N1 DA 10 P DA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B O4 DT 4 T DT 4 1_555 C N6 DA 10 P DA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B N1 DA 5 T DA 5 1_555 C N3 DT 9 P DT 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N6 DA 5 T DA 5 1_555 C O4 DT 9 P DT 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B N3 DT 6 T DT 6 1_555 C N1 DA 8 P DA 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B O4 DT 6 T DT 6 1_555 C N6 DA 8 P DA 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N1 DG 7 T DG 7 1_555 C N3 DC 7 P DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B N2 DG 7 T DG 7 1_555 C O2 DC 7 P DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B O6 DG 7 T DG 7 1_555 C N4 DC 7 P DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B N1 DA 8 T DA 8 1_555 C N3 DT 6 P DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B N6 DA 8 T DA 8 1_555 C O4 DT 6 P DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B N3 DC 9 T DC 9 1_555 C N1 DG 5 P DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B N4 DC 9 T DC 9 1_555 C O6 DG 5 P DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B O2 DC 9 T DC 9 1_555 C N2 DG 5 P DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B N1 DG 10 T DG 10 1_555 C N3 DC 4 P DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B N2 DG 10 T DG 10 1_555 C O2 DC 4 P DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B O6 DG 10 T DG 10 1_555 C N4 DC 4 P DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B N3 DC 11 T DC 11 1_555 C N1 DG 3 P DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B N4 DC 11 T DC 11 1_555 C O6 DG 3 P DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 B O2 DC 11 T DC 11 1_555 C N2 DG 3 P DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 B N3 DT 12 T DT 12 1_555 C N1 DA 2 P DA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 B O4 DT 12 T DT 12 1_555 C N6 DA 2 P DA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 278 n n C1 C2 GOL sing 279 n n C1 H11 GOL sing 280 n n C1 H12 GOL sing 281 n n O1 HO1 GOL sing 282 n n C2 O2 GOL sing 283 n n C2 C3 GOL sing 284 n n C2 H2 GOL sing 285 n n O2 HO2 GOL sing 286 n n C3 O3 GOL sing 287 n n C3 H31 GOL sing 288 n n C3 H32 GOL sing 289 n n O3 HO3 GOL sing 290 n n # _atom_sites.entry_id 4J9P _atom_sites.fract_transf_matrix[1][1] 0.010128 _atom_sites.fract_transf_matrix[1][2] 0.005847 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011694 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012241 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 GOL A 1 501 433 GOL GOL . E 5 HOH A 1 601 434 HOH HOH . E 5 HOH A 2 602 435 HOH HOH . E 5 HOH A 3 603 436 HOH HOH . E 5 HOH A 4 604 437 HOH HOH . E 5 HOH A 5 605 438 HOH HOH . E 5 HOH A 6 606 439 HOH HOH . E 5 HOH A 7 607 440 HOH HOH . E 5 HOH A 8 608 441 HOH HOH . E 5 HOH A 9 609 442 HOH HOH . E 5 HOH A 10 610 443 HOH HOH . E 5 HOH A 11 611 444 HOH HOH . E 5 HOH A 12 612 445 HOH HOH . E 5 HOH A 13 613 446 HOH HOH . E 5 HOH A 14 614 447 HOH HOH . E 5 HOH A 15 615 448 HOH HOH . E 5 HOH A 16 616 449 HOH HOH . E 5 HOH A 17 617 450 HOH HOH . E 5 HOH A 18 618 451 HOH HOH . E 5 HOH A 19 619 452 HOH HOH . E 5 HOH A 20 620 453 HOH HOH . E 5 HOH A 21 621 454 HOH HOH . E 5 HOH A 22 622 455 HOH HOH . E 5 HOH A 23 623 456 HOH HOH . E 5 HOH A 24 624 457 HOH HOH . E 5 HOH A 25 625 458 HOH HOH . E 5 HOH A 26 626 459 HOH HOH . E 5 HOH A 27 627 460 HOH HOH . E 5 HOH A 28 628 461 HOH HOH . E 5 HOH A 29 629 462 HOH HOH . E 5 HOH A 30 630 463 HOH HOH . E 5 HOH A 31 631 464 HOH HOH . E 5 HOH A 32 632 465 HOH HOH . E 5 HOH A 33 633 466 HOH HOH . E 5 HOH A 34 634 467 HOH HOH . E 5 HOH A 35 635 468 HOH HOH . E 5 HOH A 36 636 469 HOH HOH . E 5 HOH A 37 637 471 HOH HOH . E 5 HOH A 38 638 473 HOH HOH . E 5 HOH A 39 639 474 HOH HOH . E 5 HOH A 40 640 476 HOH HOH . E 5 HOH A 41 641 477 HOH HOH . E 5 HOH A 42 642 478 HOH HOH . E 5 HOH A 43 643 479 HOH HOH . E 5 HOH A 44 644 480 HOH HOH . E 5 HOH A 45 645 481 HOH HOH . E 5 HOH A 46 646 482 HOH HOH . E 5 HOH A 47 647 483 HOH HOH . E 5 HOH A 48 648 484 HOH HOH . E 5 HOH A 49 649 485 HOH HOH . E 5 HOH A 50 650 486 HOH HOH . E 5 HOH A 51 651 487 HOH HOH . E 5 HOH A 52 652 488 HOH HOH . E 5 HOH A 53 653 490 HOH HOH . E 5 HOH A 54 654 491 HOH HOH . E 5 HOH A 55 655 492 HOH HOH . E 5 HOH A 56 656 493 HOH HOH . E 5 HOH A 57 657 494 HOH HOH . E 5 HOH A 58 658 495 HOH HOH . E 5 HOH A 59 659 497 HOH HOH . E 5 HOH A 60 660 499 HOH HOH . E 5 HOH A 61 661 500 HOH HOH . E 5 HOH A 62 662 503 HOH HOH . E 5 HOH A 63 663 504 HOH HOH . E 5 HOH A 64 664 506 HOH HOH . E 5 HOH A 65 665 507 HOH HOH . E 5 HOH A 66 666 508 HOH HOH . E 5 HOH A 67 667 509 HOH HOH . E 5 HOH A 68 668 510 HOH HOH . E 5 HOH A 69 669 511 HOH HOH . E 5 HOH A 70 670 512 HOH HOH . E 5 HOH A 71 671 513 HOH HOH . E 5 HOH A 72 672 514 HOH HOH . E 5 HOH A 73 673 515 HOH HOH . E 5 HOH A 74 674 516 HOH HOH . E 5 HOH A 75 675 517 HOH HOH . E 5 HOH A 76 676 518 HOH HOH . E 5 HOH A 77 677 519 HOH HOH . E 5 HOH A 78 678 521 HOH HOH . E 5 HOH A 79 679 522 HOH HOH . E 5 HOH A 80 680 523 HOH HOH . E 5 HOH A 81 681 524 HOH HOH . E 5 HOH A 82 682 525 HOH HOH . E 5 HOH A 83 683 526 HOH HOH . E 5 HOH A 84 684 527 HOH HOH . E 5 HOH A 85 685 529 HOH HOH . E 5 HOH A 86 686 530 HOH HOH . E 5 HOH A 87 687 531 HOH HOH . E 5 HOH A 88 688 532 HOH HOH . E 5 HOH A 89 689 533 HOH HOH . E 5 HOH A 90 690 535 HOH HOH . E 5 HOH A 91 691 536 HOH HOH . E 5 HOH A 92 692 537 HOH HOH . E 5 HOH A 93 693 538 HOH HOH . E 5 HOH A 94 694 539 HOH HOH . E 5 HOH A 95 695 540 HOH HOH . E 5 HOH A 96 696 542 HOH HOH . E 5 HOH A 97 697 543 HOH HOH . E 5 HOH A 98 698 544 HOH HOH . E 5 HOH A 99 699 545 HOH HOH . E 5 HOH A 100 700 546 HOH HOH . E 5 HOH A 101 701 547 HOH HOH . E 5 HOH A 102 702 548 HOH HOH . E 5 HOH A 103 703 549 HOH HOH . E 5 HOH A 104 704 550 HOH HOH . E 5 HOH A 105 705 551 HOH HOH . E 5 HOH A 106 706 552 HOH HOH . E 5 HOH A 107 707 553 HOH HOH . E 5 HOH A 108 708 554 HOH HOH . E 5 HOH A 109 709 555 HOH HOH . E 5 HOH A 110 710 557 HOH HOH . E 5 HOH A 111 711 559 HOH HOH . E 5 HOH A 112 712 560 HOH HOH . E 5 HOH A 113 713 562 HOH HOH . E 5 HOH A 114 714 563 HOH HOH . E 5 HOH A 115 715 564 HOH HOH . E 5 HOH A 116 716 565 HOH HOH . E 5 HOH A 117 717 566 HOH HOH . E 5 HOH A 118 718 568 HOH HOH . E 5 HOH A 119 719 569 HOH HOH . E 5 HOH A 120 720 570 HOH HOH . E 5 HOH A 121 721 505 HOH HOH . F 5 HOH T 1 101 472 HOH HOH . F 5 HOH T 2 102 475 HOH HOH . F 5 HOH T 3 103 520 HOH HOH . F 5 HOH T 4 104 534 HOH HOH . F 5 HOH T 5 105 541 HOH HOH . F 5 HOH T 6 106 558 HOH HOH . F 5 HOH T 7 107 561 HOH HOH . F 5 HOH T 8 108 567 HOH HOH . G 5 HOH P 1 101 470 HOH HOH . G 5 HOH P 2 102 489 HOH HOH . G 5 HOH P 3 103 496 HOH HOH . G 5 HOH P 4 104 498 HOH HOH . G 5 HOH P 5 105 501 HOH HOH . G 5 HOH P 6 106 502 HOH HOH . G 5 HOH P 7 107 528 HOH HOH . G 5 HOH P 8 108 556 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 -40.68 20.682 13.271 1 12.21 ? C1 GOL 501 A 1 HETATM 2 O O1 GOL . . . D 4 -41.672 21.668 13.478 1 18.45 ? O1 GOL 501 A 1 HETATM 3 C C2 GOL . . . D 4 -40.25 20.765 11.814 1 22.31 ? C2 GOL 501 A 1 HETATM 4 O O2 GOL . . . D 4 -38.995 21.4 11.717 1 10.68 ? O2 GOL 501 A 1 HETATM 5 C C3 GOL . . . D 4 -40.212 19.385 11.175 1 16.46 ? C3 GOL 501 A 1 HETATM 6 O O3 GOL . . . D 4 -40.551 19.503 9.81 1 17.46 ? O3 GOL 501 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 73 _model_server_stats.create_model_time_ms 82 _model_server_stats.query_time_ms 439 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #