data_4J9R
#
_model_server_result.job_id            mMauUk0R3J77Ged707gCMQ 
_model_server_result.datetime_utc      '2024-11-27 01:43:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4j9r 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":501}' 
#
_entry.id    4J9R 
#
_exptl.entry_id    4J9R 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4J9R 
_cell.length_a            98.82 
_cell.length_b            98.82 
_cell.length_c            81.11 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4J9R 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
hydrog TYPE_28_PAIR hydrog1 B N3 DT 5 T DT 5 1_555 C O6 DG 9 P DG 9 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? 
hydrog TYPE_28_PAIR hydrog2 B O2 DT 5 T DT 5 1_555 C N1 DG 9 P DG 9 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog3 B N1 DA 6 T DA 6 1_555 C N3 DT 8 P DT 8 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog4 B N6 DA 6 T DA 6 1_555 C O4 DT 8 P DT 8 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog5 B N3 DT 7 T DT 7 1_555 C N1 DA 7 P DA 7 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog6 B O4 DT 7 T DT 7 1_555 C N6 DA 7 P DA 7 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog7 B N1 DG 8 T DG 8 1_555 C N3 DC 6 P DC 6 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog8 B N2 DG 8 T DG 8 1_555 C O2 DC 6 P DC 6 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog9 B O6 DG 8 T DG 8 1_555 C N4 DC 6 P DC 6 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog10 B N1 DA 9 T DA 9 1_555 C N3 DT 5 P DT 5 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog11 B N6 DA 9 T DA 9 1_555 C O4 DT 5 P DT 5 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog12 B N3 DC 10 T DC 10 1_555 C N1 DG 4 P DG 4 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog13 B N4 DC 10 T DC 10 1_555 C O6 DG 4 P DG 4 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog14 B O2 DC 10 T DC 10 1_555 C N2 DG 4 P DG 4 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog15 B N1 DG 11 T DG 11 1_555 C N3 DC 3 P DC 3 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog16 B N2 DG 11 T DG 11 1_555 C O2 DC 3 P DC 3 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog17 B O6 DG 11 T DG 11 1_555 C N4 DC 3 P DC 3 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 278 n n 
C1 C2 GOL sing 279 n n 
C1 H11 GOL sing 280 n n 
C1 H12 GOL sing 281 n n 
O1 HO1 GOL sing 282 n n 
C2 O2 GOL sing 283 n n 
C2 C3 GOL sing 284 n n 
C2 H2 GOL sing 285 n n 
O2 HO2 GOL sing 286 n n 
C3 O3 GOL sing 287 n n 
C3 H31 GOL sing 288 n n 
C3 H32 GOL sing 289 n n 
O3 HO3 GOL sing 290 n n 
#
_atom_sites.entry_id                     4J9R 
_atom_sites.fract_transf_matrix[1][1]    0.010119 
_atom_sites.fract_transf_matrix[1][2]    0.005842 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011685 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012329 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 GOL A 1 501 433 GOL GOL . 
E 5 HOH A 1 601 434 HOH HOH . 
E 5 HOH A 2 602 436 HOH HOH . 
E 5 HOH A 3 603 437 HOH HOH . 
E 5 HOH A 4 604 438 HOH HOH . 
E 5 HOH A 5 605 440 HOH HOH . 
E 5 HOH A 6 606 441 HOH HOH . 
E 5 HOH A 7 607 442 HOH HOH . 
E 5 HOH A 8 608 443 HOH HOH . 
E 5 HOH A 9 609 445 HOH HOH . 
E 5 HOH A 10 610 446 HOH HOH . 
E 5 HOH A 11 611 447 HOH HOH . 
E 5 HOH A 12 612 448 HOH HOH . 
E 5 HOH A 13 613 449 HOH HOH . 
E 5 HOH A 14 614 450 HOH HOH . 
E 5 HOH A 15 615 451 HOH HOH . 
E 5 HOH A 16 616 452 HOH HOH . 
E 5 HOH A 17 617 453 HOH HOH . 
E 5 HOH A 18 618 454 HOH HOH . 
E 5 HOH A 19 619 455 HOH HOH . 
E 5 HOH A 20 620 456 HOH HOH . 
E 5 HOH A 21 621 457 HOH HOH . 
E 5 HOH A 22 622 458 HOH HOH . 
E 5 HOH A 23 623 459 HOH HOH . 
E 5 HOH A 24 624 460 HOH HOH . 
E 5 HOH A 25 625 461 HOH HOH . 
E 5 HOH A 26 626 462 HOH HOH . 
E 5 HOH A 27 627 463 HOH HOH . 
E 5 HOH A 28 628 464 HOH HOH . 
E 5 HOH A 29 629 465 HOH HOH . 
E 5 HOH A 30 630 466 HOH HOH . 
E 5 HOH A 31 631 468 HOH HOH . 
E 5 HOH A 32 632 469 HOH HOH . 
E 5 HOH A 33 633 470 HOH HOH . 
E 5 HOH A 34 634 471 HOH HOH . 
E 5 HOH A 35 635 472 HOH HOH . 
E 5 HOH A 36 636 473 HOH HOH . 
E 5 HOH A 37 637 474 HOH HOH . 
E 5 HOH A 38 638 475 HOH HOH . 
E 5 HOH A 39 639 476 HOH HOH . 
E 5 HOH A 40 640 477 HOH HOH . 
E 5 HOH A 41 641 478 HOH HOH . 
E 5 HOH A 42 642 479 HOH HOH . 
E 5 HOH A 43 643 480 HOH HOH . 
E 5 HOH A 44 644 481 HOH HOH . 
E 5 HOH A 45 645 483 HOH HOH . 
E 5 HOH A 46 646 484 HOH HOH . 
E 5 HOH A 47 647 485 HOH HOH . 
E 5 HOH A 48 648 486 HOH HOH . 
E 5 HOH A 49 649 487 HOH HOH . 
E 5 HOH A 50 650 488 HOH HOH . 
E 5 HOH A 51 651 489 HOH HOH . 
E 5 HOH A 52 652 490 HOH HOH . 
E 5 HOH A 53 653 491 HOH HOH . 
E 5 HOH A 54 654 492 HOH HOH . 
E 5 HOH A 55 655 493 HOH HOH . 
E 5 HOH A 56 656 494 HOH HOH . 
E 5 HOH A 57 657 495 HOH HOH . 
E 5 HOH A 58 658 496 HOH HOH . 
E 5 HOH A 59 659 498 HOH HOH . 
E 5 HOH A 60 660 499 HOH HOH . 
E 5 HOH A 61 661 500 HOH HOH . 
E 5 HOH A 62 662 501 HOH HOH . 
E 5 HOH A 63 663 502 HOH HOH . 
E 5 HOH A 64 664 503 HOH HOH . 
E 5 HOH A 65 665 505 HOH HOH . 
E 5 HOH A 66 666 506 HOH HOH . 
E 5 HOH A 67 667 507 HOH HOH . 
E 5 HOH A 68 668 508 HOH HOH . 
E 5 HOH A 69 669 509 HOH HOH . 
E 5 HOH A 70 670 510 HOH HOH . 
E 5 HOH A 71 671 511 HOH HOH . 
E 5 HOH A 72 672 513 HOH HOH . 
E 5 HOH A 73 673 514 HOH HOH . 
E 5 HOH A 74 674 515 HOH HOH . 
E 5 HOH A 75 675 516 HOH HOH . 
E 5 HOH A 76 676 517 HOH HOH . 
E 5 HOH A 77 677 518 HOH HOH . 
E 5 HOH A 78 678 520 HOH HOH . 
E 5 HOH A 79 679 521 HOH HOH . 
E 5 HOH A 80 680 522 HOH HOH . 
E 5 HOH A 81 681 525 HOH HOH . 
F 5 HOH T 1 101 444 HOH HOH . 
F 5 HOH T 2 102 482 HOH HOH . 
F 5 HOH T 3 103 512 HOH HOH . 
F 5 HOH T 4 104 524 HOH HOH . 
G 5 HOH P 1 101 435 HOH HOH . 
G 5 HOH P 2 102 439 HOH HOH . 
G 5 HOH P 3 103 467 HOH HOH . 
G 5 HOH P 4 104 497 HOH HOH . 
G 5 HOH P 5 105 504 HOH HOH . 
G 5 HOH P 6 106 519 HOH HOH . 
G 5 HOH P 7 107 523 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 4 -40.354 20.791 13.289 1 18.43 ? C1 GOL 501 A 1 
HETATM 2 O O1 GOL . . . D 4 -41.297 21.811 13.525 1 17.64 ? O1 GOL 501 A 1 
HETATM 3 C C2 GOL . . . D 4 -39.922 20.898 11.829 1 19.47 ? C2 GOL 501 A 1 
HETATM 4 O O2 GOL . . . D 4 -38.562 21.278 11.767 1 19.93 ? O2 GOL 501 A 1 
HETATM 5 C C3 GOL . . . D 4 -40.169 19.555 11.151 1 20.44 ? C3 GOL 501 A 1 
HETATM 6 O O3 GOL . . . D 4 -40.406 19.721 9.772 1 20.5 ? O3 GOL 501 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           272 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#