data_4J9Z # _model_server_result.job_id 9Y-hlmfvQd_-MAi97WFB2w _model_server_result.datetime_utc '2024-12-27 00:23:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4j9z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":203}' # _entry.id 4J9Z # _exptl.entry_id 4J9Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.81 _cell.angle_gamma 90 _cell.entry_id 4J9Z _cell.length_a 77.2 _cell.length_b 66.85 _cell.length_c 64.83 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4J9Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 72.892173 0 64.686718 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OD1 ASP 21 R ASP 20 1_555 F CA CA . R CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc2 B OD1 ASP 23 R ASP 22 1_555 F CA CA . R CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc3 B OD1 ASP 25 R ASP 24 1_555 F CA CA . R CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc4 B O THR 27 R THR 26 1_555 F CA CA . R CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc5 B OE2 GLU 32 R GLU 31 1_555 F CA CA . R CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc6 B OE1 GLU 32 R GLU 31 1_555 F CA CA . R CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc7 B OD1 ASP 57 R ASP 56 1_555 G CA CA . R CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc8 B OD2 ASP 59 R ASP 58 1_555 G CA CA . R CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc9 B OD1 ASN 61 R ASN 60 1_555 G CA CA . R CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? metalc ? metalc10 B O THR 63 R THR 62 1_555 G CA CA . R CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? metalc ? metalc11 B OE2 GLU 68 R GLU 67 1_555 G CA CA . R CA 203 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc12 B OE2 GLU 68 R GLU 67 1_555 G CA CA . R CA 203 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.539 ? metalc ? metalc13 B OE1 GLU 68 R GLU 67 1_555 G CA CA . R CA 203 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.561 ? metalc ? metalc14 B OE1 GLU 68 R GLU 67 1_555 G CA CA . R CA 203 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.636 ? metalc ? metalc15 F CA CA . R CA 202 1_555 L O HOH . R HOH 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc16 G CA CA . R CA 203 1_555 L O HOH . R HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4J9Z _atom_sites.fract_transf_matrix[1][1] 0.012953 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000863 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014959 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015459 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 B 1 501 1 SO4 SO4 . D 3 SO4 B 1 502 5 SO4 SO4 . E 4 1KP R 1 201 1 1KP 309 . F 5 CA R 1 202 1001 CA CA . G 5 CA R 1 203 1002 CA CA . H 3 SO4 R 1 204 2 SO4 SO4 . I 3 SO4 R 1 205 3 SO4 SO4 . J 6 GOL R 1 206 4 GOL GOL . K 7 HOH B 1 601 3 HOH HOH . K 7 HOH B 2 602 5 HOH HOH . K 7 HOH B 3 603 7 HOH HOH . K 7 HOH B 4 604 8 HOH HOH . K 7 HOH B 5 605 14 HOH HOH . K 7 HOH B 6 606 16 HOH HOH . K 7 HOH B 7 607 18 HOH HOH . K 7 HOH B 8 608 20 HOH HOH . K 7 HOH B 9 609 21 HOH HOH . K 7 HOH B 10 610 23 HOH HOH . K 7 HOH B 11 611 30 HOH HOH . K 7 HOH B 12 612 33 HOH HOH . K 7 HOH B 13 613 37 HOH HOH . K 7 HOH B 14 614 40 HOH HOH . K 7 HOH B 15 615 44 HOH HOH . K 7 HOH B 16 616 46 HOH HOH . K 7 HOH B 17 617 52 HOH HOH . K 7 HOH B 18 618 55 HOH HOH . K 7 HOH B 19 619 58 HOH HOH . K 7 HOH B 20 620 63 HOH HOH . K 7 HOH B 21 621 64 HOH HOH . K 7 HOH B 22 622 66 HOH HOH . K 7 HOH B 23 623 75 HOH HOH . K 7 HOH B 24 624 81 HOH HOH . K 7 HOH B 25 625 85 HOH HOH . K 7 HOH B 26 626 88 HOH HOH . K 7 HOH B 27 627 91 HOH HOH . K 7 HOH B 28 628 92 HOH HOH . K 7 HOH B 29 629 94 HOH HOH . K 7 HOH B 30 630 98 HOH HOH . K 7 HOH B 31 631 102 HOH HOH . K 7 HOH B 32 632 105 HOH HOH . K 7 HOH B 33 633 106 HOH HOH . K 7 HOH B 34 634 110 HOH HOH . K 7 HOH B 35 635 115 HOH HOH . K 7 HOH B 36 636 116 HOH HOH . K 7 HOH B 37 637 117 HOH HOH . K 7 HOH B 38 638 120 HOH HOH . K 7 HOH B 39 639 121 HOH HOH . K 7 HOH B 40 640 122 HOH HOH . K 7 HOH B 41 641 126 HOH HOH . K 7 HOH B 42 642 127 HOH HOH . K 7 HOH B 43 643 128 HOH HOH . K 7 HOH B 44 644 131 HOH HOH . K 7 HOH B 45 645 132 HOH HOH . K 7 HOH B 46 646 133 HOH HOH . K 7 HOH B 47 647 134 HOH HOH . K 7 HOH B 48 648 135 HOH HOH . K 7 HOH B 49 649 136 HOH HOH . K 7 HOH B 50 650 137 HOH HOH . K 7 HOH B 51 651 140 HOH HOH . K 7 HOH B 52 652 153 HOH HOH . K 7 HOH B 53 653 154 HOH HOH . K 7 HOH B 54 654 157 HOH HOH . K 7 HOH B 55 655 158 HOH HOH . K 7 HOH B 56 656 160 HOH HOH . K 7 HOH B 57 657 161 HOH HOH . L 7 HOH R 1 301 1 HOH HOH . L 7 HOH R 2 302 2 HOH HOH . L 7 HOH R 3 303 4 HOH HOH . L 7 HOH R 4 304 6 HOH HOH . L 7 HOH R 5 305 9 HOH HOH . L 7 HOH R 6 306 10 HOH HOH . L 7 HOH R 7 307 11 HOH HOH . L 7 HOH R 8 308 12 HOH HOH . L 7 HOH R 9 309 13 HOH HOH . L 7 HOH R 10 310 15 HOH HOH . L 7 HOH R 11 311 17 HOH HOH . L 7 HOH R 12 312 19 HOH HOH . L 7 HOH R 13 313 22 HOH HOH . L 7 HOH R 14 314 24 HOH HOH . L 7 HOH R 15 315 25 HOH HOH . L 7 HOH R 16 316 26 HOH HOH . L 7 HOH R 17 317 27 HOH HOH . L 7 HOH R 18 318 28 HOH HOH . L 7 HOH R 19 319 29 HOH HOH . L 7 HOH R 20 320 31 HOH HOH . L 7 HOH R 21 321 32 HOH HOH . L 7 HOH R 22 322 34 HOH HOH . L 7 HOH R 23 323 35 HOH HOH . L 7 HOH R 24 324 36 HOH HOH . L 7 HOH R 25 325 38 HOH HOH . L 7 HOH R 26 326 39 HOH HOH . L 7 HOH R 27 327 41 HOH HOH . L 7 HOH R 28 328 42 HOH HOH . L 7 HOH R 29 329 43 HOH HOH . L 7 HOH R 30 330 50 HOH HOH . L 7 HOH R 31 331 51 HOH HOH . L 7 HOH R 32 332 53 HOH HOH . L 7 HOH R 33 333 54 HOH HOH . L 7 HOH R 34 334 56 HOH HOH . L 7 HOH R 35 335 57 HOH HOH . L 7 HOH R 36 336 59 HOH HOH . L 7 HOH R 37 337 60 HOH HOH . L 7 HOH R 38 338 61 HOH HOH . L 7 HOH R 39 339 62 HOH HOH . L 7 HOH R 40 340 65 HOH HOH . L 7 HOH R 41 341 67 HOH HOH . L 7 HOH R 42 342 68 HOH HOH . L 7 HOH R 43 343 69 HOH HOH . L 7 HOH R 44 344 70 HOH HOH . L 7 HOH R 45 345 71 HOH HOH . L 7 HOH R 46 346 73 HOH HOH . L 7 HOH R 47 347 74 HOH HOH . L 7 HOH R 48 348 77 HOH HOH . L 7 HOH R 49 349 78 HOH HOH . L 7 HOH R 50 350 79 HOH HOH . L 7 HOH R 51 351 80 HOH HOH . L 7 HOH R 52 352 82 HOH HOH . L 7 HOH R 53 353 83 HOH HOH . L 7 HOH R 54 354 84 HOH HOH . L 7 HOH R 55 355 86 HOH HOH . L 7 HOH R 56 356 89 HOH HOH . L 7 HOH R 57 357 90 HOH HOH . L 7 HOH R 58 358 95 HOH HOH . L 7 HOH R 59 359 96 HOH HOH . L 7 HOH R 60 360 97 HOH HOH . L 7 HOH R 61 361 99 HOH HOH . L 7 HOH R 62 362 100 HOH HOH . L 7 HOH R 63 363 101 HOH HOH . L 7 HOH R 64 364 103 HOH HOH . L 7 HOH R 65 365 104 HOH HOH . L 7 HOH R 66 366 107 HOH HOH . L 7 HOH R 67 367 108 HOH HOH . L 7 HOH R 68 368 109 HOH HOH . L 7 HOH R 69 369 111 HOH HOH . L 7 HOH R 70 370 113 HOH HOH . L 7 HOH R 71 371 118 HOH HOH . L 7 HOH R 72 372 123 HOH HOH . L 7 HOH R 73 373 124 HOH HOH . L 7 HOH R 74 374 125 HOH HOH . L 7 HOH R 75 375 129 HOH HOH . L 7 HOH R 76 376 130 HOH HOH . L 7 HOH R 77 377 138 HOH HOH . L 7 HOH R 78 378 139 HOH HOH . L 7 HOH R 79 379 141 HOH HOH . L 7 HOH R 80 380 142 HOH HOH . L 7 HOH R 81 381 143 HOH HOH . L 7 HOH R 82 382 144 HOH HOH . L 7 HOH R 83 383 145 HOH HOH . L 7 HOH R 84 384 146 HOH HOH . L 7 HOH R 85 385 147 HOH HOH . L 7 HOH R 86 386 148 HOH HOH . L 7 HOH R 87 387 149 HOH HOH . L 7 HOH R 88 388 150 HOH HOH . L 7 HOH R 89 389 151 HOH HOH . L 7 HOH R 90 390 152 HOH HOH . L 7 HOH R 91 391 155 HOH HOH . L 7 HOH R 92 392 156 HOH HOH . L 7 HOH R 93 393 159 HOH HOH . L 7 HOH R 94 394 162 HOH HOH . L 7 HOH R 95 395 163 HOH HOH . L 7 HOH R 96 396 164 HOH HOH . L 7 HOH R 97 397 165 HOH HOH . L 7 HOH R 98 398 166 HOH HOH . L 7 HOH R 99 399 167 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 5 _atom_site.Cartn_x 42.146 _atom_site.Cartn_y 45.606 _atom_site.Cartn_z 56.673 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 38.39 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 203 _atom_site.auth_asym_id R _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 240 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 1 #