data_4JA9 # _model_server_result.job_id GRsc4Jj2MiIR754nTnQWFA _model_server_result.datetime_utc '2024-12-27 14:10:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ja9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 4JA9 # _exptl.entry_id 4JA9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4JA9 _cell.length_a 50.09 _cell.length_b 50.09 _cell.length_c 379.19 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JA9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 231 A ASP 242 1_555 B MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc2 A OD2 ASP 260 A ASP 271 1_555 B MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc3 A OD2 ASP 260 A ASP 271 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc4 A OD1 ASN 292 A ASN 303 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc5 B MG MG . A MG 501 1_555 D O HOH . A HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.512 ? metalc ? metalc6 C MG MG . A MG 502 1_555 D O HOH . A HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4JA9 _atom_sites.fract_transf_matrix[1][1] 0.019964 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019964 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002637 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 501 1 MG MG . C 2 MG A 1 502 2 MG MG . D 3 HOH A 1 601 1 HOH HOH . D 3 HOH A 2 602 2 HOH HOH . D 3 HOH A 3 603 3 HOH HOH . D 3 HOH A 4 604 4 HOH HOH . D 3 HOH A 5 605 5 HOH HOH . D 3 HOH A 6 606 6 HOH HOH . D 3 HOH A 7 607 7 HOH HOH . D 3 HOH A 8 608 8 HOH HOH . D 3 HOH A 9 609 9 HOH HOH . D 3 HOH A 10 610 10 HOH HOH . D 3 HOH A 11 611 11 HOH HOH . D 3 HOH A 12 612 12 HOH HOH . D 3 HOH A 13 613 13 HOH HOH . D 3 HOH A 14 614 14 HOH HOH . D 3 HOH A 15 615 15 HOH HOH . D 3 HOH A 16 616 16 HOH HOH . D 3 HOH A 17 617 17 HOH HOH . D 3 HOH A 18 618 18 HOH HOH . D 3 HOH A 19 619 19 HOH HOH . D 3 HOH A 20 620 20 HOH HOH . D 3 HOH A 21 621 21 HOH HOH . D 3 HOH A 22 622 22 HOH HOH . D 3 HOH A 23 623 23 HOH HOH . D 3 HOH A 24 624 24 HOH HOH . D 3 HOH A 25 625 25 HOH HOH . D 3 HOH A 26 626 26 HOH HOH . D 3 HOH A 27 627 27 HOH HOH . D 3 HOH A 28 628 28 HOH HOH . D 3 HOH A 29 629 29 HOH HOH . D 3 HOH A 30 630 30 HOH HOH . D 3 HOH A 31 631 31 HOH HOH . D 3 HOH A 32 632 32 HOH HOH . D 3 HOH A 33 633 33 HOH HOH . D 3 HOH A 34 634 34 HOH HOH . D 3 HOH A 35 635 35 HOH HOH . D 3 HOH A 36 636 36 HOH HOH . D 3 HOH A 37 637 37 HOH HOH . D 3 HOH A 38 638 38 HOH HOH . D 3 HOH A 39 639 39 HOH HOH . D 3 HOH A 40 640 40 HOH HOH . D 3 HOH A 41 641 41 HOH HOH . D 3 HOH A 42 642 42 HOH HOH . D 3 HOH A 43 643 43 HOH HOH . D 3 HOH A 44 644 44 HOH HOH . D 3 HOH A 45 645 45 HOH HOH . D 3 HOH A 46 646 46 HOH HOH . D 3 HOH A 47 647 47 HOH HOH . D 3 HOH A 48 648 48 HOH HOH . D 3 HOH A 49 649 49 HOH HOH . D 3 HOH A 50 650 50 HOH HOH . D 3 HOH A 51 651 51 HOH HOH . D 3 HOH A 52 652 52 HOH HOH . D 3 HOH A 53 653 53 HOH HOH . D 3 HOH A 54 654 54 HOH HOH . D 3 HOH A 55 655 55 HOH HOH . D 3 HOH A 56 656 56 HOH HOH . D 3 HOH A 57 657 57 HOH HOH . D 3 HOH A 58 658 58 HOH HOH . D 3 HOH A 59 659 59 HOH HOH . D 3 HOH A 60 660 60 HOH HOH . D 3 HOH A 61 661 61 HOH HOH . D 3 HOH A 62 662 62 HOH HOH . D 3 HOH A 63 663 63 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x -22.444 _atom_site.Cartn_y -1.208 _atom_site.Cartn_z -25.366 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 57.95 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 502 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 1 #