data_4JAB # _model_server_result.job_id 0utV6RIH9idPihDYvi4q4A _model_server_result.datetime_utc '2024-11-22 05:12:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jab # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":104}' # _entry.id 4JAB # _exptl.entry_id 4JAB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 87.62 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'STRONTIUM ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4JAB _cell.length_a 41.681 _cell.length_b 41.681 _cell.length_c 60.014 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JAB _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O4 U 6 A U 6 1_555 D SR SR . A SR 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.741 ? metalc ? metalc2 A O2' C 8 A C 8 1_555 E SR SR . A SR 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc3 A O3' C 8 A C 8 1_555 E SR SR . A SR 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? metalc ? metalc4 A O3' C 8 A C 8 1_555 E SR SR . A SR 103 2_545 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? metalc ? metalc5 B O4 U 6 B U 14 1_555 G SR SR . B SR 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? hydrog 'G-A MISPAIR' hydrog1 A O6 G 1 A G 1 1_555 B N6 A 7 B A 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'G-C PAIR' hydrog2 A N1 G 1 A G 1 1_555 B N3 C 8 B C 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A N3 U 2 A U 2 1_555 B N1 A 7 B A 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A O4 U 2 A U 2 1_555 B N6 A 7 B A 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_28_PAIR hydrog5 A N1 G 3 A G 3 1_555 B O2 U 6 B U 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_28_PAIR hydrog6 A O6 G 3 A G 3 1_555 B N3 U 6 B U 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N3 U 4 A U 4 1_555 B N1 A 5 B A 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A O4 U 4 A U 4 1_555 B N6 A 5 B A 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'A-G MISPAIR' hydrog9 A N6 A 5 A A 5 1_555 B O6 G 3 B G 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N1 A 5 A A 5 1_555 B N3 U 4 B U 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N6 A 5 A A 5 1_555 B O4 U 4 B U 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_28_PAIR hydrog12 A N3 U 6 A U 6 1_555 B O6 G 3 B G 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_28_PAIR hydrog13 A O2 U 6 A U 6 1_555 B N1 G 3 B G 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N1 A 7 A A 7 1_555 B N3 U 2 B U 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N6 A 7 A A 7 1_555 B O4 U 2 B U 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N3 C 8 A C 8 1_555 B N1 G 1 B G 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N4 C 8 A C 8 1_555 B O6 G 1 B G 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A O2 C 8 A C 8 1_555 B N2 G 1 B G 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Sr 2' _chem_comp.formula_weight 87.62 _chem_comp.id SR _chem_comp.mon_nstd_flag . _chem_comp.name 'STRONTIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4JAB _atom_sites.fract_transf_matrix[1][1] 0.023992 _atom_sites.fract_transf_matrix[1][2] 0.013852 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.027703 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016663 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SR A 1 101 1 SR SR . D 2 SR A 1 102 1 SR SR . E 2 SR A 1 103 1 SR SR . F 2 SR A 1 104 1 SR SR . G 2 SR B 1 101 1 SR SR . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol SR _atom_site.label_atom_id SR _atom_site.label_comp_id SR _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 2 _atom_site.Cartn_x 20.354 _atom_site.Cartn_y -12.747 _atom_site.Cartn_z 5.585 _atom_site.occupancy 0.33 _atom_site.B_iso_or_equiv 33.23 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id SR _atom_site.auth_comp_id SR _atom_site.auth_seq_id 104 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #