data_4JAI # _model_server_result.job_id qGVR3uw4FYXjljekexkedw _model_server_result.datetime_utc '2024-12-10 08:08:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jai # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4JAI # _exptl.entry_id 4JAI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 406.436 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{4-[(6-oxo-5,6-dihydrobenzo[c][1,8]naphthyridin-1-yl)amino]phenyl}benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4JAI _cell.length_a 83.965 _cell.length_b 83.965 _cell.length_c 167.064 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JAI _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C25 H18 N4 O2' _chem_comp.formula_weight 406.436 _chem_comp.id XU2 _chem_comp.mon_nstd_flag . _chem_comp.name N-{4-[(6-oxo-5,6-dihydrobenzo[c][1,8]naphthyridin-1-yl)amino]phenyl}benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C5 C6 XU2 doub 376 n y C5 C1 XU2 sing 377 n y C6 C7 XU2 sing 378 n y C1 C2 XU2 doub 379 n y C7 C8 XU2 sing 380 n n C7 C3 XU2 doub 381 n y C2 C3 XU2 sing 382 n y O12 C8 XU2 doub 383 n n C8 N1 XU2 sing 384 n n C3 C4 XU2 sing 385 n n N1 C9 XU2 sing 386 n n C4 C9 XU2 doub 387 n y C4 C12 XU2 sing 388 n y N3 C12 XU2 sing 389 n n N3 C13 XU2 sing 390 n n C9 N2 XU2 sing 391 n y C12 C11 XU2 doub 392 n y C13 C18 XU2 doub 393 n y C13 C14 XU2 sing 394 n y C18 C17 XU2 sing 395 n y C14 C15 XU2 doub 396 n y N2 C10 XU2 doub 397 n y C17 C16 XU2 doub 398 n y C11 C10 XU2 sing 399 n y C15 C16 XU2 sing 400 n y C16 N4 XU2 sing 401 n n O38 C19 XU2 doub 402 n n N4 C19 XU2 sing 403 n n C19 C20 XU2 sing 404 n n C20 C21 XU2 doub 405 n y C20 C25 XU2 sing 406 n y C21 C22 XU2 sing 407 n y C25 C24 XU2 doub 408 n y C22 C23 XU2 doub 409 n y C24 C23 XU2 sing 410 n y C6 H1 XU2 sing 411 n n C5 H2 XU2 sing 412 n n C1 H3 XU2 sing 413 n n C2 H4 XU2 sing 414 n n N1 H5 XU2 sing 415 n n C10 H6 XU2 sing 416 n n C11 H7 XU2 sing 417 n n N3 H8 XU2 sing 418 n n C14 H9 XU2 sing 419 n n C15 H10 XU2 sing 420 n n C18 H11 XU2 sing 421 n n C17 H12 XU2 sing 422 n n N4 H13 XU2 sing 423 n n C21 H14 XU2 sing 424 n n C22 H15 XU2 sing 425 n n C23 H16 XU2 sing 426 n n C24 H17 XU2 sing 427 n n C25 H18 XU2 sing 428 n n # _atom_sites.entry_id 4JAI _atom_sites.fract_transf_matrix[1][1] 0.01191 _atom_sites.fract_transf_matrix[1][2] 0.006876 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013752 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005986 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 XU2 A 1 401 1 XU2 XU2 . C 3 HOH A 1 501 8 HOH HOH . C 3 HOH A 2 502 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O12 XU2 . . . B 2 -3.967 -34.26 4.607 1 98.43 ? O12 XU2 401 A 1 HETATM 2 C C8 XU2 . . . B 2 -4.349 -33.285 5.107 1 93.86 ? C8 XU2 401 A 1 HETATM 3 C C7 XU2 . . . B 2 -4.895 -32.121 4.442 1 94.28 ? C7 XU2 401 A 1 HETATM 4 C C6 XU2 . . . B 2 -5.015 -32.034 3.082 1 95.14 ? C6 XU2 401 A 1 HETATM 5 C C5 XU2 . . . B 2 -5.567 -30.948 2.437 1 101.14 ? C5 XU2 401 A 1 HETATM 6 C C1 XU2 . . . B 2 -6.016 -29.921 3.216 1 103.97 ? C1 XU2 401 A 1 HETATM 7 C C2 XU2 . . . B 2 -5.848 -30.022 4.594 1 102.95 ? C2 XU2 401 A 1 HETATM 8 C C3 XU2 . . . B 2 -5.323 -31.134 5.211 1 98.68 ? C3 XU2 401 A 1 HETATM 9 C C4 XU2 . . . B 2 -5.165 -31.292 6.615 1 100.93 ? C4 XU2 401 A 1 HETATM 10 N N1 XU2 . . . B 2 -4.216 -33.388 6.375 1 95.16 ? N1 XU2 401 A 1 HETATM 11 C C9 XU2 . . . B 2 -4.609 -32.387 7.178 1 100.11 ? C9 XU2 401 A 1 HETATM 12 N N2 XU2 . . . B 2 -4.385 -32.616 8.476 1 99.47 ? N2 XU2 401 A 1 HETATM 13 C C10 XU2 . . . B 2 -4.679 -31.64 9.275 1 97.22 ? C10 XU2 401 A 1 HETATM 14 C C11 XU2 . . . B 2 -5.223 -30.493 8.831 1 100.14 ? C11 XU2 401 A 1 HETATM 15 C C12 XU2 . . . B 2 -5.449 -30.332 7.493 1 103.62 ? C12 XU2 401 A 1 HETATM 16 N N3 XU2 . . . B 2 -6.059 -29.209 7.01 1 110.96 ? N3 XU2 401 A 1 HETATM 17 C C13 XU2 . . . B 2 -7.155 -28.629 7.703 1 114.34 ? C13 XU2 401 A 1 HETATM 18 C C14 XU2 . . . B 2 -8.345 -29.222 8.134 1 112.62 ? C14 XU2 401 A 1 HETATM 19 C C15 XU2 . . . B 2 -9.27 -28.438 8.848 1 113.93 ? C15 XU2 401 A 1 HETATM 20 C C18 XU2 . . . B 2 -6.954 -27.292 8.011 1 117.28 ? C18 XU2 401 A 1 HETATM 21 C C17 XU2 . . . B 2 -7.833 -26.527 8.723 1 117.69 ? C17 XU2 401 A 1 HETATM 22 C C16 XU2 . . . B 2 -9.001 -27.107 9.164 1 118.8 ? C16 XU2 401 A 1 HETATM 23 N N4 XU2 . . . B 2 -9.82 -26.181 9.875 1 126.4 ? N4 XU2 401 A 1 HETATM 24 C C19 XU2 . . . B 2 -9.661 -24.77 10.167 1 129.52 ? C19 XU2 401 A 1 HETATM 25 O O38 XU2 . . . B 2 -9.164 -23.758 9.559 1 127.11 ? O38 XU2 401 A 1 HETATM 26 C C20 XU2 . . . B 2 -10.434 -24.571 11.436 1 129.8 ? C20 XU2 401 A 1 HETATM 27 C C21 XU2 . . . B 2 -11.063 -23.326 11.719 1 131.14 ? C21 XU2 401 A 1 HETATM 28 C C22 XU2 . . . B 2 -11.863 -23.155 12.844 1 126.64 ? C22 XU2 401 A 1 HETATM 29 C C23 XU2 . . . B 2 -12.009 -24.261 13.673 1 126.35 ? C23 XU2 401 A 1 HETATM 30 C C24 XU2 . . . B 2 -11.398 -25.49 13.415 1 127 ? C24 XU2 401 A 1 HETATM 31 C C25 XU2 . . . B 2 -10.633 -25.687 12.272 1 126.63 ? C25 XU2 401 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #