data_4JAL # _model_server_result.job_id -vYgi-sqC-HRFWrMMyWKuA _model_server_result.datetime_utc '2024-10-28 02:38:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jal # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 4JAL # _exptl.entry_id 4JAL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.24 _cell.angle_gamma 90 _cell.entry_id 4JAL _cell.length_a 44.276 _cell.length_b 66.291 _cell.length_c 49.768 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JAL _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 319 n n N HN1 SAH sing 320 n n N HN2 SAH sing 321 n n CA CB SAH sing 322 n n CA C SAH sing 323 n n CA HA SAH sing 324 n n CB CG SAH sing 325 n n CB HB1 SAH sing 326 n n CB HB2 SAH sing 327 n n CG SD SAH sing 328 n n CG HG1 SAH sing 329 n n CG HG2 SAH sing 330 n n SD C5' SAH sing 331 n n C O SAH doub 332 n n C OXT SAH sing 333 n n OXT HXT SAH sing 334 n n C5' C4' SAH sing 335 n n C5' "H5'1" SAH sing 336 n n C5' "H5'2" SAH sing 337 n n C4' O4' SAH sing 338 n n C4' C3' SAH sing 339 n n C4' H4' SAH sing 340 n n O4' C1' SAH sing 341 n n C3' O3' SAH sing 342 n n C3' C2' SAH sing 343 n n C3' H3' SAH sing 344 n n O3' HO3' SAH sing 345 n n C2' O2' SAH sing 346 n n C2' C1' SAH sing 347 n n C2' H2' SAH sing 348 n n O2' HO2' SAH sing 349 n n C1' N9 SAH sing 350 n n C1' H1' SAH sing 351 n n N9 C8 SAH sing 352 n y N9 C4 SAH sing 353 n y C8 N7 SAH doub 354 n y C8 H8 SAH sing 355 n n N7 C5 SAH sing 356 n y C5 C6 SAH sing 357 n y C5 C4 SAH doub 358 n y C6 N6 SAH sing 359 n n C6 N1 SAH doub 360 n y N6 HN61 SAH sing 361 n n N6 HN62 SAH sing 362 n n N1 C2 SAH sing 363 n y C2 N3 SAH doub 364 n y C2 H2 SAH sing 365 n n N3 C4 SAH sing 366 n y # _atom_sites.entry_id 4JAL _atom_sites.fract_transf_matrix[1][1] 0.022586 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003673 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015085 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020357 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SAH A 1 201 1 SAH SAH . D 3 EPE A 1 202 1 EPE EPE . E 4 EDO B 1 201 1 EDO EDO . F 4 EDO B 1 202 2 EDO EDO . G 2 SAH B 1 203 1 SAH SAH . H 5 HOH A 1 301 1 HOH HOH . H 5 HOH A 2 302 2 HOH HOH . H 5 HOH A 3 303 5 HOH HOH . H 5 HOH A 4 304 8 HOH HOH . H 5 HOH A 5 305 9 HOH HOH . H 5 HOH A 6 306 12 HOH HOH . H 5 HOH A 7 307 13 HOH HOH . H 5 HOH A 8 308 14 HOH HOH . H 5 HOH A 9 309 18 HOH HOH . H 5 HOH A 10 310 19 HOH HOH . H 5 HOH A 11 311 23 HOH HOH . H 5 HOH A 12 312 24 HOH HOH . H 5 HOH A 13 313 25 HOH HOH . H 5 HOH A 14 314 26 HOH HOH . H 5 HOH A 15 315 27 HOH HOH . H 5 HOH A 16 316 31 HOH HOH . H 5 HOH A 17 317 33 HOH HOH . H 5 HOH A 18 318 36 HOH HOH . H 5 HOH A 19 319 40 HOH HOH . H 5 HOH A 20 320 44 HOH HOH . H 5 HOH A 21 321 47 HOH HOH . H 5 HOH A 22 322 48 HOH HOH . H 5 HOH A 23 323 49 HOH HOH . I 5 HOH B 1 301 3 HOH HOH . I 5 HOH B 2 302 4 HOH HOH . I 5 HOH B 3 303 6 HOH HOH . I 5 HOH B 4 304 7 HOH HOH . I 5 HOH B 5 305 10 HOH HOH . I 5 HOH B 6 306 11 HOH HOH . I 5 HOH B 7 307 15 HOH HOH . I 5 HOH B 8 308 16 HOH HOH . I 5 HOH B 9 309 17 HOH HOH . I 5 HOH B 10 310 20 HOH HOH . I 5 HOH B 11 311 21 HOH HOH . I 5 HOH B 12 312 22 HOH HOH . I 5 HOH B 13 313 28 HOH HOH . I 5 HOH B 14 314 29 HOH HOH . I 5 HOH B 15 315 30 HOH HOH . I 5 HOH B 16 316 32 HOH HOH . I 5 HOH B 17 317 34 HOH HOH . I 5 HOH B 18 318 35 HOH HOH . I 5 HOH B 19 319 37 HOH HOH . I 5 HOH B 20 320 38 HOH HOH . I 5 HOH B 21 321 39 HOH HOH . I 5 HOH B 22 322 41 HOH HOH . I 5 HOH B 23 323 43 HOH HOH . I 5 HOH B 24 324 45 HOH HOH . I 5 HOH B 25 325 46 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . C 2 2.133 13.674 16.456 1 60.82 ? N SAH 201 A 1 HETATM 2 C CA SAH . . . C 2 1.871 12.541 17.337 1 40.47 ? CA SAH 201 A 1 HETATM 3 C CB SAH . . . C 2 3.073 12.329 18.229 1 36.73 ? CB SAH 201 A 1 HETATM 4 C CG SAH . . . C 2 3.711 11.006 17.865 1 50.85 ? CG SAH 201 A 1 HETATM 5 S SD SAH . . . C 2 5.481 11.061 18.135 1 34.51 ? SD SAH 201 A 1 HETATM 6 C C SAH . . . C 2 0.627 12.729 18.192 1 41.6 ? C SAH 201 A 1 HETATM 7 O O SAH . . . C 2 0.051 11.759 18.684 1 33.25 ? O SAH 201 A 1 HETATM 8 O OXT SAH . . . C 2 0.175 13.853 18.413 1 53.75 ? OXT SAH 201 A 1 HETATM 9 C C5' SAH . . . C 2 5.173 10.003 19.567 1 37.97 ? C5' SAH 201 A 1 HETATM 10 C C4' SAH . . . C 2 5.748 8.602 19.434 1 31.19 ? C4' SAH 201 A 1 HETATM 11 O O4' SAH . . . C 2 5.132 7.895 18.374 1 26.94 ? O4' SAH 201 A 1 HETATM 12 C C3' SAH . . . C 2 7.236 8.613 19.106 1 31.41 ? C3' SAH 201 A 1 HETATM 13 O O3' SAH . . . C 2 8.004 8.794 20.261 1 30.17 ? O3' SAH 201 A 1 HETATM 14 C C2' SAH . . . C 2 7.429 7.244 18.505 1 26.07 ? C2' SAH 201 A 1 HETATM 15 O O2' SAH . . . C 2 7.61 6.278 19.524 1 26.78 ? O2' SAH 201 A 1 HETATM 16 C C1' SAH . . . C 2 6.082 6.988 17.845 1 27.49 ? C1' SAH 201 A 1 HETATM 17 N N9 SAH . . . C 2 6.201 7.203 16.386 1 28.22 ? N9 SAH 201 A 1 HETATM 18 C C8 SAH . . . C 2 5.626 8.172 15.615 1 29.93 ? C8 SAH 201 A 1 HETATM 19 N N7 SAH . . . C 2 5.998 7.979 14.33 1 29.35 ? N7 SAH 201 A 1 HETATM 20 C C5 SAH . . . C 2 6.802 6.894 14.274 1 34.59 ? C5 SAH 201 A 1 HETATM 21 C C6 SAH . . . C 2 7.462 6.252 13.23 1 32.34 ? C6 SAH 201 A 1 HETATM 22 N N6 SAH . . . C 2 7.363 6.692 11.971 1 28.49 ? N6 SAH 201 A 1 HETATM 23 N N1 SAH . . . C 2 8.231 5.145 13.519 1 33.75 ? N1 SAH 201 A 1 HETATM 24 C C2 SAH . . . C 2 8.357 4.677 14.809 1 28.71 ? C2 SAH 201 A 1 HETATM 25 N N3 SAH . . . C 2 7.69 5.319 15.834 1 29.26 ? N3 SAH 201 A 1 HETATM 26 C C4 SAH . . . C 2 6.933 6.401 15.566 1 24.66 ? C4 SAH 201 A 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 232 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #