data_4JAN
#
_model_server_result.job_id            -cYz8Y2hI3fbuyQUxwRJDQ 
_model_server_result.datetime_utc      '2024-10-17 17:40:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4jan 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"T","auth_seq_id":301}' 
#
_entry.id    4JAN 
#
_exptl.entry_id    4JAN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          107.21 
_cell.angle_gamma         90 
_cell.entry_id            4JAN 
_cell.length_a            48.943 
_cell.length_b            208.651 
_cell.length_c            69.422 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4JAN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? trimeric 3 author_defined_assembly 1 
? trimeric 3 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,G,H,I,J,K,L,M,N,U,V,W 1 1 
D,E,F,O,P,Q,R,S,T,X,Y,Z 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 N N N 
? 6 T N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 180 G CYS 296 1_555 A SG CYS 199 G CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 A SG CYS 245 G CYS 378 1_555 A SG CYS 308 G CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf3 A SG CYS 252 G CYS 385 1_555 A SG CYS 281 G CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf4 B SG CYS 22 H CYS 22 1_555 B SG CYS 95 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf5 B SG CYS 148 H CYS 140 1_555 B SG CYS 204 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf6 C SG CYS 21 L CYS 23 1_555 C SG CYS 83 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf7 C SG CYS 131 L CYS 134 1_555 C SG CYS 190 L CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf8 D SG CYS 180 I CYS 296 1_555 D SG CYS 199 I CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf9 D SG CYS 245 I CYS 378 1_555 D SG CYS 308 I CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf10 D SG CYS 252 I CYS 385 1_555 D SG CYS 281 I CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf11 E SG CYS 22 A CYS 22 1_555 E SG CYS 95 A CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf12 E SG CYS 148 A CYS 140 1_555 E SG CYS 204 A CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf13 F SG CYS 21 B CYS 23 1_555 F SG CYS 83 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf14 F SG CYS 131 B CYS 134 1_555 F SG CYS 190 B CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
covale ? covale1 A ND2 ASN 146 G ASN 262 1_555 G C1 NAG . G NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale2 A ND2 ASN 160 G ASN 276 1_555 H C1 NAG . G NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale3 A ND2 ASN 207 G ASN 339 1_555 I C1 NAG . G NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.392 ? 
covale ? covale4 A ND2 ASN 253 G ASN 386 1_555 J C1 NAG . G NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale5 A ND2 ASN 259 G ASN 392 1_555 K C1 NAG . G NAG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.254 ? 
covale ? covale6 D ND2 ASN 146 I ASN 262 1_555 O C1 NAG . I NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? 
covale ? covale7 D ND2 ASN 160 I ASN 276 1_555 P C1 NAG . I NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale8 D ND2 ASN 207 I ASN 339 1_555 Q C1 NAG . I NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
covale ? covale9 D ND2 ASN 253 I ASN 386 1_555 R C1 NAG . I NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale10 D ND2 ASN 259 I ASN 392 1_555 S C1 NAG . I NAG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
metalc ? metalc1 B O LYS 43 H LYS 43 1_555 M NA NA . L NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.2 ? 
metalc ? metalc2 B O LEU 45 H LEU 45 1_555 M NA NA . L NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.154 ? 
metalc ? metalc3 B O GLY 114 H GLY 106 1_555 L NA NA . H NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.054 ? 
metalc ? metalc4 L NA NA . H NA 301 1_555 C O GLY 36 L GLY 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.858 ? 
metalc ? metalc5 C OE2 GLU 2 L GLU 3 1_555 M NA NA . L NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? 
metalc ? metalc6 C O GLY 95 L GLY 99 1_555 M NA NA . L NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.047 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     4JAN 
_atom_sites.fract_transf_matrix[1][1]    0.020432 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006329 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004793 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01508 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 NAG G 1 501 762 NAG NAG . 
H 4 NAG G 1 502 776 NAG NAG . 
I 4 NAG G 1 503 503 NAG NAG . 
J 4 NAG G 1 504 886 NAG NAG . 
K 4 NAG G 1 505 892 NAG NAG . 
L 5 NA H 1 301 101 NA NA . 
M 5 NA L 1 301 102 NA NA . 
N 6 GOL L 1 302 104 GOL GOL . 
O 4 NAG I 1 501 762 NAG NAG . 
P 4 NAG I 1 502 776 NAG NAG . 
Q 4 NAG I 1 503 839 NAG NAG . 
R 4 NAG I 1 504 886 NAG NAG . 
S 4 NAG I 1 505 892 NAG NAG . 
T 6 GOL B 1 301 103 GOL GOL . 
U 7 HOH G 1 601 4 HOH HOH . 
U 7 HOH G 2 602 10 HOH HOH . 
U 7 HOH G 3 603 14 HOH HOH . 
U 7 HOH G 4 604 16 HOH HOH . 
U 7 HOH G 5 605 21 HOH HOH . 
V 7 HOH H 1 401 6 HOH HOH . 
V 7 HOH H 2 402 8 HOH HOH . 
V 7 HOH H 3 403 19 HOH HOH . 
W 7 HOH L 1 401 11 HOH HOH . 
W 7 HOH L 2 402 12 HOH HOH . 
W 7 HOH L 3 403 15 HOH HOH . 
X 7 HOH I 1 601 2 HOH HOH . 
Y 7 HOH A 1 301 1 HOH HOH . 
Y 7 HOH A 2 302 3 HOH HOH . 
Y 7 HOH A 3 303 7 HOH HOH . 
Y 7 HOH A 4 304 9 HOH HOH . 
Y 7 HOH A 5 305 18 HOH HOH . 
Y 7 HOH A 6 306 23 HOH HOH . 
Z 7 HOH B 1 401 5 HOH HOH . 
Z 7 HOH B 2 402 13 HOH HOH . 
Z 7 HOH B 3 403 17 HOH HOH . 
Z 7 HOH B 4 404 22 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . T 6 20.332 12.407 -19.841 1 82.45 ? C1 GOL 301 B 1 
HETATM 2 O O1 GOL . . . T 6 20.146 12.037 -18.493 1 82.39 ? O1 GOL 301 B 1 
HETATM 3 C C2 GOL . . . T 6 19.267 13.42 -20.242 1 82.01 ? C2 GOL 301 B 1 
HETATM 4 O O2 GOL . . . T 6 18.672 13.972 -19.089 1 83.6 ? O2 GOL 301 B 1 
HETATM 5 C C3 GOL . . . T 6 19.892 14.529 -21.079 1 79.77 ? C3 GOL 301 B 1 
HETATM 6 O O3 GOL . . . T 6 18.914 15.499 -21.378 1 78.23 ? O3 GOL 301 B 1 
HETATM 7 H H11 GOL . . . T 6 20.262 11.525 -20.478 1 98.93 ? H11 GOL 301 B 1 
HETATM 8 H H12 GOL . . . T 6 21.323 12.842 -19.97 1 98.93 ? H12 GOL 301 B 1 
HETATM 9 H HO1 GOL . . . T 6 20.789 11.337 -18.254 1 98.86 ? HO1 GOL 301 B 1 
HETATM 10 H H2 GOL . . . T 6 18.511 12.913 -20.842 1 98.41 ? H2 GOL 301 B 1 
HETATM 11 H HO2 GOL . . . T 6 19.353 14.444 -18.564 1 100.32 ? HO2 GOL 301 B 1 
HETATM 12 H H31 GOL . . . T 6 20.294 14.113 -22.003 1 95.73 ? H31 GOL 301 B 1 
HETATM 13 H H32 GOL . . . T 6 20.711 14.99 -20.528 1 95.73 ? H32 GOL 301 B 1 
HETATM 14 H HO3 GOL . . . T 6 19.336 16.381 -21.439 1 93.88 ? HO3 GOL 301 B 1 
#
_model_server_stats.io_time_ms              26 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           14 
#