data_4JAN # _model_server_result.job_id bWFlUp9kWnVZVsrsXKqjag _model_server_result.datetime_utc '2024-11-23 00:23:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jan # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":501}' # _entry.id 4JAN # _exptl.entry_id 4JAN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.21 _cell.angle_gamma 90 _cell.entry_id 4JAN _cell.length_a 48.943 _cell.length_b 208.651 _cell.length_c 69.422 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JAN _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 ? trimeric 3 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,H,I,J,K,L,M,N,U,V,W 1 1 D,E,F,O,P,Q,R,S,T,X,Y,Z 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 O N N ? 4 P N N ? 4 Q N N ? 4 R N N ? 4 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 180 G CYS 296 1_555 A SG CYS 199 G CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 245 G CYS 378 1_555 A SG CYS 308 G CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 A SG CYS 252 G CYS 385 1_555 A SG CYS 281 G CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 B SG CYS 22 H CYS 22 1_555 B SG CYS 95 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 B SG CYS 148 H CYS 140 1_555 B SG CYS 204 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf6 C SG CYS 21 L CYS 23 1_555 C SG CYS 83 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 C SG CYS 131 L CYS 134 1_555 C SG CYS 190 L CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf8 D SG CYS 180 I CYS 296 1_555 D SG CYS 199 I CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf9 D SG CYS 245 I CYS 378 1_555 D SG CYS 308 I CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf10 D SG CYS 252 I CYS 385 1_555 D SG CYS 281 I CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf11 E SG CYS 22 A CYS 22 1_555 E SG CYS 95 A CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf12 E SG CYS 148 A CYS 140 1_555 E SG CYS 204 A CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf13 F SG CYS 21 B CYS 23 1_555 F SG CYS 83 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf14 F SG CYS 131 B CYS 134 1_555 F SG CYS 190 B CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A ND2 ASN 146 G ASN 262 1_555 G C1 NAG . G NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale2 A ND2 ASN 160 G ASN 276 1_555 H C1 NAG . G NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale3 A ND2 ASN 207 G ASN 339 1_555 I C1 NAG . G NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.392 ? covale ? covale4 A ND2 ASN 253 G ASN 386 1_555 J C1 NAG . G NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale5 A ND2 ASN 259 G ASN 392 1_555 K C1 NAG . G NAG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.254 ? covale ? covale6 D ND2 ASN 146 I ASN 262 1_555 O C1 NAG . I NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale7 D ND2 ASN 160 I ASN 276 1_555 P C1 NAG . I NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale8 D ND2 ASN 207 I ASN 339 1_555 Q C1 NAG . I NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale9 D ND2 ASN 253 I ASN 386 1_555 R C1 NAG . I NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale10 D ND2 ASN 259 I ASN 392 1_555 S C1 NAG . I NAG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? metalc ? metalc1 B O LYS 43 H LYS 43 1_555 M NA NA . L NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.2 ? metalc ? metalc2 B O LEU 45 H LEU 45 1_555 M NA NA . L NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.154 ? metalc ? metalc3 B O GLY 114 H GLY 106 1_555 L NA NA . H NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.054 ? metalc ? metalc4 L NA NA . H NA 301 1_555 C O GLY 36 L GLY 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.858 ? metalc ? metalc5 C OE2 GLU 2 L GLU 3 1_555 M NA NA . L NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc6 C O GLY 95 L GLY 99 1_555 M NA NA . L NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.047 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 250 n n C1 O1 NAG sing 251 n n C1 O5 NAG sing 252 n n C1 H1 NAG sing 253 n n C2 C3 NAG sing 254 n n C2 N2 NAG sing 255 n n C2 H2 NAG sing 256 n n C3 C4 NAG sing 257 n n C3 O3 NAG sing 258 n n C3 H3 NAG sing 259 n n C4 C5 NAG sing 260 n n C4 O4 NAG sing 261 n n C4 H4 NAG sing 262 n n C5 C6 NAG sing 263 n n C5 O5 NAG sing 264 n n C5 H5 NAG sing 265 n n C6 O6 NAG sing 266 n n C6 H61 NAG sing 267 n n C6 H62 NAG sing 268 n n C7 C8 NAG sing 269 n n C7 N2 NAG sing 270 n n C7 O7 NAG doub 271 n n C8 H81 NAG sing 272 n n C8 H82 NAG sing 273 n n C8 H83 NAG sing 274 n n N2 HN2 NAG sing 275 n n O1 HO1 NAG sing 276 n n O3 HO3 NAG sing 277 n n O4 HO4 NAG sing 278 n n O6 HO6 NAG sing 279 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4JAN _atom_sites.fract_transf_matrix[1][1] 0.020432 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006329 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004793 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01508 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 NAG G 1 501 762 NAG NAG . H 4 NAG G 1 502 776 NAG NAG . I 4 NAG G 1 503 503 NAG NAG . J 4 NAG G 1 504 886 NAG NAG . K 4 NAG G 1 505 892 NAG NAG . L 5 NA H 1 301 101 NA NA . M 5 NA L 1 301 102 NA NA . N 6 GOL L 1 302 104 GOL GOL . O 4 NAG I 1 501 762 NAG NAG . P 4 NAG I 1 502 776 NAG NAG . Q 4 NAG I 1 503 839 NAG NAG . R 4 NAG I 1 504 886 NAG NAG . S 4 NAG I 1 505 892 NAG NAG . T 6 GOL B 1 301 103 GOL GOL . U 7 HOH G 1 601 4 HOH HOH . U 7 HOH G 2 602 10 HOH HOH . U 7 HOH G 3 603 14 HOH HOH . U 7 HOH G 4 604 16 HOH HOH . U 7 HOH G 5 605 21 HOH HOH . V 7 HOH H 1 401 6 HOH HOH . V 7 HOH H 2 402 8 HOH HOH . V 7 HOH H 3 403 19 HOH HOH . W 7 HOH L 1 401 11 HOH HOH . W 7 HOH L 2 402 12 HOH HOH . W 7 HOH L 3 403 15 HOH HOH . X 7 HOH I 1 601 2 HOH HOH . Y 7 HOH A 1 301 1 HOH HOH . Y 7 HOH A 2 302 3 HOH HOH . Y 7 HOH A 3 303 7 HOH HOH . Y 7 HOH A 4 304 9 HOH HOH . Y 7 HOH A 5 305 18 HOH HOH . Y 7 HOH A 6 306 23 HOH HOH . Z 7 HOH B 1 401 5 HOH HOH . Z 7 HOH B 2 402 13 HOH HOH . Z 7 HOH B 3 403 17 HOH HOH . Z 7 HOH B 4 404 22 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . G 4 21.321 -55.356 34.595 1 57.28 ? C1 NAG 501 G 1 HETATM 2 C C2 NAG . . . G 4 20.183 -55.168 33.587 1 67.83 ? C2 NAG 501 G 1 HETATM 3 C C3 NAG . . . G 4 18.811 -55.572 34.127 1 69.94 ? C3 NAG 501 G 1 HETATM 4 C C4 NAG . . . G 4 18.884 -56.86 34.935 1 71.29 ? C4 NAG 501 G 1 HETATM 5 C C5 NAG . . . G 4 19.996 -56.728 35.966 1 69.81 ? C5 NAG 501 G 1 HETATM 6 C C6 NAG . . . G 4 20.037 -57.91 36.934 1 69.45 ? C6 NAG 501 G 1 HETATM 7 C C7 NAG . . . G 4 19.928 -53.404 31.916 1 77.74 ? C7 NAG 501 G 1 HETATM 8 C C8 NAG . . . G 4 19.399 -52.013 31.722 1 78.52 ? C8 NAG 501 G 1 HETATM 9 N N2 NAG . . . G 4 20.145 -53.776 33.175 1 74.15 ? N2 NAG 501 G 1 HETATM 10 O O3 NAG . . . G 4 17.899 -55.74 33.061 1 69.3 ? O3 NAG 501 G 1 HETATM 11 O O4 NAG . . . G 4 17.652 -57.089 35.585 1 72.67 ? O4 NAG 501 G 1 HETATM 12 O O5 NAG . . . G 4 21.227 -56.586 35.289 1 65.6 ? O5 NAG 501 G 1 HETATM 13 O O6 NAG . . . G 4 20.905 -57.62 38.009 1 68.64 ? O6 NAG 501 G 1 HETATM 14 O O7 NAG . . . G 4 20.136 -54.13 30.946 1 79.55 ? O7 NAG 501 G 1 HETATM 15 H H2 NAG . . . G 4 20.395 -55.783 32.712 1 81.4 ? H2 NAG 501 G 1 HETATM 16 H H3 NAG . . . G 4 18.456 -54.781 34.787 1 83.93 ? H3 NAG 501 G 1 HETATM 17 H H4 NAG . . . G 4 19.092 -57.683 34.251 1 85.55 ? H4 NAG 501 G 1 HETATM 18 H H5 NAG . . . G 4 19.825 -55.819 36.542 1 83.77 ? H5 NAG 501 G 1 HETATM 19 H H61 NAG . . . G 4 20.367 -58.803 36.403 1 83.34 ? H61 NAG 501 G 1 HETATM 20 H H62 NAG . . . G 4 19.034 -58.099 37.317 1 83.34 ? H62 NAG 501 G 1 HETATM 21 H H81 NAG . . . G 4 18.434 -52.058 31.218 1 94.23 ? H81 NAG 501 G 1 HETATM 22 H H82 NAG . . . G 4 20.099 -51.439 31.114 1 94.23 ? H82 NAG 501 G 1 HETATM 23 H H83 NAG . . . G 4 19.281 -51.53 32.692 1 94.23 ? H83 NAG 501 G 1 HETATM 24 H HN2 NAG . . . G 4 20.291 -53.071 33.883 1 88.98 ? HN2 NAG 501 G 1 HETATM 25 H HO3 NAG . . . G 4 18.353 -55.559 32.212 1 83.15 ? HO3 NAG 501 G 1 HETATM 26 H HO4 NAG . . . G 4 17.029 -56.364 35.368 1 87.2 ? HO4 NAG 501 G 1 HETATM 27 H HO6 NAG . . . G 4 21.285 -56.725 37.89 1 82.37 ? HO6 NAG 501 G 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #