data_4JAN
#
_model_server_result.job_id            nRxuLSecKBhL4q12fLxcFA 
_model_server_result.datetime_utc      '2024-11-26 14:01:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4jan 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":502}' 
#
_entry.id    4JAN 
#
_exptl.entry_id    4JAN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          4 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    10 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          107.21 
_cell.angle_gamma         90 
_cell.entry_id            4JAN 
_cell.length_a            48.943 
_cell.length_b            208.651 
_cell.length_c            69.422 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4JAN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? trimeric 3 author_defined_assembly 1 
? trimeric 3 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,G,H,I,J,K,L,M,N,U,V,W 1 1 
D,E,F,O,P,Q,R,S,T,X,Y,Z 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 J N N 
? 4 K N N 
? 4 O N N 
? 4 P N N 
? 4 Q N N 
? 4 R N N 
? 4 S N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 180 G CYS 296 1_555 A SG CYS 199 G CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 A SG CYS 245 G CYS 378 1_555 A SG CYS 308 G CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf3 A SG CYS 252 G CYS 385 1_555 A SG CYS 281 G CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf4 B SG CYS 22 H CYS 22 1_555 B SG CYS 95 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf5 B SG CYS 148 H CYS 140 1_555 B SG CYS 204 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf6 C SG CYS 21 L CYS 23 1_555 C SG CYS 83 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf7 C SG CYS 131 L CYS 134 1_555 C SG CYS 190 L CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf8 D SG CYS 180 I CYS 296 1_555 D SG CYS 199 I CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf9 D SG CYS 245 I CYS 378 1_555 D SG CYS 308 I CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf10 D SG CYS 252 I CYS 385 1_555 D SG CYS 281 I CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf11 E SG CYS 22 A CYS 22 1_555 E SG CYS 95 A CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf12 E SG CYS 148 A CYS 140 1_555 E SG CYS 204 A CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf13 F SG CYS 21 B CYS 23 1_555 F SG CYS 83 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf14 F SG CYS 131 B CYS 134 1_555 F SG CYS 190 B CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
covale ? covale1 A ND2 ASN 146 G ASN 262 1_555 G C1 NAG . G NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale2 A ND2 ASN 160 G ASN 276 1_555 H C1 NAG . G NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale3 A ND2 ASN 207 G ASN 339 1_555 I C1 NAG . G NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.392 ? 
covale ? covale4 A ND2 ASN 253 G ASN 386 1_555 J C1 NAG . G NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale5 A ND2 ASN 259 G ASN 392 1_555 K C1 NAG . G NAG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.254 ? 
covale ? covale6 D ND2 ASN 146 I ASN 262 1_555 O C1 NAG . I NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? 
covale ? covale7 D ND2 ASN 160 I ASN 276 1_555 P C1 NAG . I NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale8 D ND2 ASN 207 I ASN 339 1_555 Q C1 NAG . I NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
covale ? covale9 D ND2 ASN 253 I ASN 386 1_555 R C1 NAG . I NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale10 D ND2 ASN 259 I ASN 392 1_555 S C1 NAG . I NAG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
metalc ? metalc1 B O LYS 43 H LYS 43 1_555 M NA NA . L NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.2 ? 
metalc ? metalc2 B O LEU 45 H LEU 45 1_555 M NA NA . L NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.154 ? 
metalc ? metalc3 B O GLY 114 H GLY 106 1_555 L NA NA . H NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.054 ? 
metalc ? metalc4 L NA NA . H NA 301 1_555 C O GLY 36 L GLY 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.858 ? 
metalc ? metalc5 C OE2 GLU 2 L GLU 3 1_555 M NA NA . L NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? 
metalc ? metalc6 C O GLY 95 L GLY 99 1_555 M NA NA . L NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.047 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 250 n n 
C1 O1 NAG sing 251 n n 
C1 O5 NAG sing 252 n n 
C1 H1 NAG sing 253 n n 
C2 C3 NAG sing 254 n n 
C2 N2 NAG sing 255 n n 
C2 H2 NAG sing 256 n n 
C3 C4 NAG sing 257 n n 
C3 O3 NAG sing 258 n n 
C3 H3 NAG sing 259 n n 
C4 C5 NAG sing 260 n n 
C4 O4 NAG sing 261 n n 
C4 H4 NAG sing 262 n n 
C5 C6 NAG sing 263 n n 
C5 O5 NAG sing 264 n n 
C5 H5 NAG sing 265 n n 
C6 O6 NAG sing 266 n n 
C6 H61 NAG sing 267 n n 
C6 H62 NAG sing 268 n n 
C7 C8 NAG sing 269 n n 
C7 N2 NAG sing 270 n n 
C7 O7 NAG doub 271 n n 
C8 H81 NAG sing 272 n n 
C8 H82 NAG sing 273 n n 
C8 H83 NAG sing 274 n n 
N2 HN2 NAG sing 275 n n 
O1 HO1 NAG sing 276 n n 
O3 HO3 NAG sing 277 n n 
O4 HO4 NAG sing 278 n n 
O6 HO6 NAG sing 279 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     4JAN 
_atom_sites.fract_transf_matrix[1][1]    0.020432 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006329 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004793 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01508 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 NAG G 1 501 762 NAG NAG . 
H 4 NAG G 1 502 776 NAG NAG . 
I 4 NAG G 1 503 503 NAG NAG . 
J 4 NAG G 1 504 886 NAG NAG . 
K 4 NAG G 1 505 892 NAG NAG . 
L 5 NA H 1 301 101 NA NA . 
M 5 NA L 1 301 102 NA NA . 
N 6 GOL L 1 302 104 GOL GOL . 
O 4 NAG I 1 501 762 NAG NAG . 
P 4 NAG I 1 502 776 NAG NAG . 
Q 4 NAG I 1 503 839 NAG NAG . 
R 4 NAG I 1 504 886 NAG NAG . 
S 4 NAG I 1 505 892 NAG NAG . 
T 6 GOL B 1 301 103 GOL GOL . 
U 7 HOH G 1 601 4 HOH HOH . 
U 7 HOH G 2 602 10 HOH HOH . 
U 7 HOH G 3 603 14 HOH HOH . 
U 7 HOH G 4 604 16 HOH HOH . 
U 7 HOH G 5 605 21 HOH HOH . 
V 7 HOH H 1 401 6 HOH HOH . 
V 7 HOH H 2 402 8 HOH HOH . 
V 7 HOH H 3 403 19 HOH HOH . 
W 7 HOH L 1 401 11 HOH HOH . 
W 7 HOH L 2 402 12 HOH HOH . 
W 7 HOH L 3 403 15 HOH HOH . 
X 7 HOH I 1 601 2 HOH HOH . 
Y 7 HOH A 1 301 1 HOH HOH . 
Y 7 HOH A 2 302 3 HOH HOH . 
Y 7 HOH A 3 303 7 HOH HOH . 
Y 7 HOH A 4 304 9 HOH HOH . 
Y 7 HOH A 5 305 18 HOH HOH . 
Y 7 HOH A 6 306 23 HOH HOH . 
Z 7 HOH B 1 401 5 HOH HOH . 
Z 7 HOH B 2 402 13 HOH HOH . 
Z 7 HOH B 3 403 17 HOH HOH . 
Z 7 HOH B 4 404 22 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . P 4 -0.438 47.191 -23.826 1 83.57 ? C1 NAG 502 I 1 
HETATM 2 C C2 NAG . . . P 4 -1.225 47.893 -24.933 1 92.6 ? C2 NAG 502 I 1 
HETATM 3 C C3 NAG . . . P 4 -1.884 46.927 -25.913 1 94.43 ? C3 NAG 502 I 1 
HETATM 4 C C4 NAG . . . P 4 -0.951 45.786 -26.289 1 94.38 ? C4 NAG 502 I 1 
HETATM 5 C C5 NAG . . . P 4 -0.365 45.156 -25.035 1 93.11 ? C5 NAG 502 I 1 
HETATM 6 C C6 NAG . . . P 4 0.547 43.988 -25.394 1 93.39 ? C6 NAG 502 I 1 
HETATM 7 C C7 NAG . . . P 4 -2.335 50.035 -24.63 1 101.52 ? C7 NAG 502 I 1 
HETATM 8 C C8 NAG . . . P 4 -3.043 50.901 -23.628 1 101.99 ? C8 NAG 502 I 1 
HETATM 9 N N2 NAG . . . P 4 -2.243 48.739 -24.337 1 98.39 ? N2 NAG 502 I 1 
HETATM 10 O O3 NAG . . . P 4 -2.254 47.622 -27.085 1 94.94 ? O3 NAG 502 I 1 
HETATM 11 O O4 NAG . . . P 4 -1.668 44.812 -27.014 1 94.63 ? O4 NAG 502 I 1 
HETATM 12 O O5 NAG . . . P 4 0.362 46.133 -24.32 1 89.84 ? O5 NAG 502 I 1 
HETATM 13 O O6 NAG . . . P 4 0.934 43.312 -24.22 1 93.28 ? O6 NAG 502 I 1 
HETATM 14 O O7 NAG . . . P 4 -1.874 50.522 -25.663 1 103.46 ? O7 NAG 502 I 1 
HETATM 15 H H2 NAG . . . P 4 -0.537 48.522 -25.497 1 111.12 ? H2 NAG 502 I 1 
HETATM 16 H H3 NAG . . . P 4 -2.775 46.513 -25.44 1 113.32 ? H3 NAG 502 I 1 
HETATM 17 H H4 NAG . . . P 4 -0.152 46.187 -26.912 1 113.25 ? H4 NAG 502 I 1 
HETATM 18 H H5 NAG . . . P 4 -1.185 44.776 -24.426 1 111.73 ? H5 NAG 502 I 1 
HETATM 19 H H61 NAG . . . P 4 1.418 44.36 -25.934 1 112.06 ? H61 NAG 502 I 1 
HETATM 20 H H62 NAG . . . P 4 0.015 43.3 -26.051 1 112.06 ? H62 NAG 502 I 1 
HETATM 21 H H81 NAG . . . P 4 -3.905 51.372 -24.1 1 122.39 ? H81 NAG 502 I 1 
HETATM 22 H H82 NAG . . . P 4 -2.36 51.67 -23.267 1 122.39 ? H82 NAG 502 I 1 
HETATM 23 H H83 NAG . . . P 4 -3.376 50.289 -22.79 1 122.39 ? H83 NAG 502 I 1 
HETATM 24 H HN2 NAG . . . P 4 -2.892 48.323 -23.684 1 118.07 ? HN2 NAG 502 I 1 
HETATM 25 H HO3 NAG . . . P 4 -2.002 48.565 -26.998 1 113.92 ? HO3 NAG 502 I 1 
HETATM 26 H HO4 NAG . . . P 4 -2.602 45.096 -27.108 1 113.55 ? HO4 NAG 502 I 1 
HETATM 27 H HO6 NAG . . . P 4 0.527 43.749 -23.442 1 111.94 ? HO6 NAG 502 I 1 
#
_model_server_stats.io_time_ms              25 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           354 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           27 
#