data_4JAP
#
_model_server_result.job_id            sGH6otBn1FeBvus4e1gHiQ 
_model_server_result.datetime_utc      '2024-11-05 04:36:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4jap 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":401}' 
#
_entry.id    4JAP 
#
_exptl.entry_id    4JAP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              312.487 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S)-2-methyl-3-oxooctadecanoic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          97.57 
_cell.angle_gamma         90 
_cell.entry_id            4JAP 
_cell.length_a            72.011 
_cell.length_b            48.627 
_cell.length_c            193.656 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4JAP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,K,L 1 1 
C,D,H,I,J,M,N 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 H N N 
? 4 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C SG CYS 138 B CYS 138 1_555 H CAE 14U . B 14U 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.782 ? 
covale ? covale2 D SG CYS 138 A CYS 138 1_555 J CAE 14U . A 14U 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.782 ? 
#
_chem_comp.formula           'C19 H36 O3' 
_chem_comp.formula_weight    312.487 
_chem_comp.id                14U 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S)-2-methyl-3-oxooctadecanoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4JAP 
_atom_sites.fract_transf_matrix[1][1]    0.013887 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001846 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020565 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005209 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 PLM D 1 401 401 PLM PLM . 
F 2 PLM C 1 401 401 PLM PLM . 
G 3 COA C 1 402 402 COA COA . 
H 4 14U B 1 401 401 14U 14U . 
I 3 COA B 1 402 402 COA COA . 
J 4 14U A 1 401 401 14U 14U . 
K 5 HOH D 1 501 501 HOH HOH . 
K 5 HOH D 2 502 502 HOH HOH . 
K 5 HOH D 3 503 503 HOH HOH . 
K 5 HOH D 4 504 504 HOH HOH . 
K 5 HOH D 5 505 505 HOH HOH . 
K 5 HOH D 6 506 506 HOH HOH . 
K 5 HOH D 7 507 507 HOH HOH . 
K 5 HOH D 8 508 508 HOH HOH . 
K 5 HOH D 9 509 509 HOH HOH . 
K 5 HOH D 10 510 510 HOH HOH . 
K 5 HOH D 11 511 511 HOH HOH . 
K 5 HOH D 12 512 512 HOH HOH . 
K 5 HOH D 13 513 513 HOH HOH . 
K 5 HOH D 14 514 514 HOH HOH . 
K 5 HOH D 15 515 515 HOH HOH . 
K 5 HOH D 16 516 516 HOH HOH . 
K 5 HOH D 17 517 517 HOH HOH . 
K 5 HOH D 18 518 518 HOH HOH . 
K 5 HOH D 19 519 519 HOH HOH . 
K 5 HOH D 20 520 520 HOH HOH . 
K 5 HOH D 21 521 521 HOH HOH . 
K 5 HOH D 22 522 522 HOH HOH . 
K 5 HOH D 23 523 523 HOH HOH . 
K 5 HOH D 24 524 524 HOH HOH . 
K 5 HOH D 25 525 525 HOH HOH . 
K 5 HOH D 26 526 526 HOH HOH . 
K 5 HOH D 27 527 527 HOH HOH . 
K 5 HOH D 28 528 528 HOH HOH . 
K 5 HOH D 29 529 529 HOH HOH . 
K 5 HOH D 30 530 530 HOH HOH . 
K 5 HOH D 31 531 531 HOH HOH . 
K 5 HOH D 32 532 532 HOH HOH . 
L 5 HOH C 1 501 501 HOH HOH . 
L 5 HOH C 2 502 502 HOH HOH . 
L 5 HOH C 3 503 503 HOH HOH . 
L 5 HOH C 4 504 504 HOH HOH . 
L 5 HOH C 5 505 505 HOH HOH . 
L 5 HOH C 6 506 506 HOH HOH . 
L 5 HOH C 7 507 507 HOH HOH . 
L 5 HOH C 8 508 508 HOH HOH . 
L 5 HOH C 9 509 509 HOH HOH . 
L 5 HOH C 10 510 510 HOH HOH . 
L 5 HOH C 11 511 511 HOH HOH . 
L 5 HOH C 12 512 512 HOH HOH . 
L 5 HOH C 13 513 513 HOH HOH . 
L 5 HOH C 14 514 514 HOH HOH . 
L 5 HOH C 15 515 515 HOH HOH . 
L 5 HOH C 16 516 516 HOH HOH . 
L 5 HOH C 17 517 517 HOH HOH . 
L 5 HOH C 18 518 518 HOH HOH . 
L 5 HOH C 19 519 519 HOH HOH . 
M 5 HOH B 1 501 501 HOH HOH . 
M 5 HOH B 2 502 502 HOH HOH . 
M 5 HOH B 3 503 503 HOH HOH . 
M 5 HOH B 4 504 504 HOH HOH . 
M 5 HOH B 5 505 505 HOH HOH . 
M 5 HOH B 6 506 506 HOH HOH . 
M 5 HOH B 7 507 507 HOH HOH . 
M 5 HOH B 8 508 508 HOH HOH . 
M 5 HOH B 9 509 509 HOH HOH . 
M 5 HOH B 10 510 510 HOH HOH . 
M 5 HOH B 11 511 511 HOH HOH . 
M 5 HOH B 12 512 512 HOH HOH . 
M 5 HOH B 13 513 513 HOH HOH . 
M 5 HOH B 14 514 514 HOH HOH . 
M 5 HOH B 15 515 515 HOH HOH . 
M 5 HOH B 16 516 516 HOH HOH . 
M 5 HOH B 17 517 517 HOH HOH . 
M 5 HOH B 18 518 518 HOH HOH . 
M 5 HOH B 19 519 519 HOH HOH . 
M 5 HOH B 20 520 520 HOH HOH . 
M 5 HOH B 21 521 521 HOH HOH . 
M 5 HOH B 22 522 522 HOH HOH . 
M 5 HOH B 23 523 523 HOH HOH . 
M 5 HOH B 24 524 524 HOH HOH . 
M 5 HOH B 25 525 525 HOH HOH . 
M 5 HOH B 26 526 526 HOH HOH . 
M 5 HOH B 27 527 527 HOH HOH . 
M 5 HOH B 28 528 528 HOH HOH . 
M 5 HOH B 29 529 530 HOH HOH . 
M 5 HOH B 30 530 531 HOH HOH . 
M 5 HOH B 31 531 532 HOH HOH . 
M 5 HOH B 32 532 533 HOH HOH . 
M 5 HOH B 33 533 534 HOH HOH . 
M 5 HOH B 34 534 535 HOH HOH . 
M 5 HOH B 35 535 536 HOH HOH . 
M 5 HOH B 36 536 537 HOH HOH . 
M 5 HOH B 37 537 538 HOH HOH . 
M 5 HOH B 38 538 539 HOH HOH . 
M 5 HOH B 39 539 540 HOH HOH . 
M 5 HOH B 40 540 541 HOH HOH . 
M 5 HOH B 41 541 542 HOH HOH . 
M 5 HOH B 42 542 543 HOH HOH . 
M 5 HOH B 43 543 544 HOH HOH . 
M 5 HOH B 44 544 545 HOH HOH . 
M 5 HOH B 45 545 546 HOH HOH . 
M 5 HOH B 46 546 547 HOH HOH . 
M 5 HOH B 47 547 548 HOH HOH . 
M 5 HOH B 48 548 549 HOH HOH . 
M 5 HOH B 49 549 550 HOH HOH . 
M 5 HOH B 50 550 551 HOH HOH . 
M 5 HOH B 51 551 552 HOH HOH . 
M 5 HOH B 52 552 553 HOH HOH . 
M 5 HOH B 53 553 554 HOH HOH . 
M 5 HOH B 54 554 555 HOH HOH . 
M 5 HOH B 55 555 556 HOH HOH . 
M 5 HOH B 56 556 557 HOH HOH . 
M 5 HOH B 57 557 558 HOH HOH . 
M 5 HOH B 58 558 559 HOH HOH . 
M 5 HOH B 59 559 560 HOH HOH . 
M 5 HOH B 60 560 561 HOH HOH . 
M 5 HOH B 61 561 562 HOH HOH . 
M 5 HOH B 62 562 563 HOH HOH . 
M 5 HOH B 63 563 564 HOH HOH . 
M 5 HOH B 64 564 565 HOH HOH . 
M 5 HOH B 65 565 566 HOH HOH . 
M 5 HOH B 66 566 567 HOH HOH . 
M 5 HOH B 67 567 568 HOH HOH . 
M 5 HOH B 68 568 569 HOH HOH . 
M 5 HOH B 69 569 570 HOH HOH . 
M 5 HOH B 70 570 571 HOH HOH . 
M 5 HOH B 71 571 572 HOH HOH . 
M 5 HOH B 72 572 573 HOH HOH . 
M 5 HOH B 73 573 574 HOH HOH . 
M 5 HOH B 74 574 575 HOH HOH . 
M 5 HOH B 75 575 576 HOH HOH . 
M 5 HOH B 76 576 577 HOH HOH . 
M 5 HOH B 77 577 578 HOH HOH . 
M 5 HOH B 78 578 579 HOH HOH . 
M 5 HOH B 79 579 580 HOH HOH . 
M 5 HOH B 80 580 581 HOH HOH . 
M 5 HOH B 81 581 582 HOH HOH . 
M 5 HOH B 82 582 583 HOH HOH . 
M 5 HOH B 83 583 584 HOH HOH . 
N 5 HOH A 1 501 501 HOH HOH . 
N 5 HOH A 2 502 502 HOH HOH . 
N 5 HOH A 3 503 503 HOH HOH . 
N 5 HOH A 4 504 504 HOH HOH . 
N 5 HOH A 5 505 505 HOH HOH . 
N 5 HOH A 6 506 506 HOH HOH . 
N 5 HOH A 7 507 507 HOH HOH . 
N 5 HOH A 8 508 508 HOH HOH . 
N 5 HOH A 9 509 509 HOH HOH . 
N 5 HOH A 10 510 510 HOH HOH . 
N 5 HOH A 11 511 511 HOH HOH . 
N 5 HOH A 12 512 512 HOH HOH . 
N 5 HOH A 13 513 513 HOH HOH . 
N 5 HOH A 14 514 514 HOH HOH . 
N 5 HOH A 15 515 515 HOH HOH . 
N 5 HOH A 16 516 516 HOH HOH . 
N 5 HOH A 17 517 517 HOH HOH . 
N 5 HOH A 18 518 518 HOH HOH . 
N 5 HOH A 19 519 519 HOH HOH . 
N 5 HOH A 20 520 520 HOH HOH . 
N 5 HOH A 21 521 521 HOH HOH . 
N 5 HOH A 22 522 522 HOH HOH . 
N 5 HOH A 23 523 523 HOH HOH . 
N 5 HOH A 24 524 524 HOH HOH . 
N 5 HOH A 25 525 525 HOH HOH . 
N 5 HOH A 26 526 526 HOH HOH . 
N 5 HOH A 27 527 527 HOH HOH . 
N 5 HOH A 28 528 528 HOH HOH . 
N 5 HOH A 29 529 529 HOH HOH . 
N 5 HOH A 30 530 530 HOH HOH . 
N 5 HOH A 31 531 531 HOH HOH . 
N 5 HOH A 32 532 532 HOH HOH . 
N 5 HOH A 33 533 533 HOH HOH . 
N 5 HOH A 34 534 534 HOH HOH . 
N 5 HOH A 35 535 535 HOH HOH . 
N 5 HOH A 36 536 536 HOH HOH . 
N 5 HOH A 37 537 537 HOH HOH . 
N 5 HOH A 38 538 538 HOH HOH . 
N 5 HOH A 39 539 539 HOH HOH . 
N 5 HOH A 40 540 540 HOH HOH . 
N 5 HOH A 41 541 541 HOH HOH . 
N 5 HOH A 42 542 542 HOH HOH . 
N 5 HOH A 43 543 543 HOH HOH . 
N 5 HOH A 44 544 544 HOH HOH . 
N 5 HOH A 45 545 545 HOH HOH . 
N 5 HOH A 46 546 546 HOH HOH . 
N 5 HOH A 47 547 547 HOH HOH . 
N 5 HOH A 48 548 548 HOH HOH . 
N 5 HOH A 49 549 549 HOH HOH . 
N 5 HOH A 50 550 550 HOH HOH . 
N 5 HOH A 51 551 551 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA 14U . . . J 4 28.969 3.02 2.468 1 53.55 ? CAA 14U 401 A 1 
HETATM 2 C CAB 14U . . . J 4 20.24 14.276 15.65 1 48.34 ? CAB 14U 401 A 1 
HETATM 3 O OAC 14U . . . J 4 23.134 14.77 15.237 1 53.32 ? OAC 14U 401 A 1 
HETATM 4 O OAD 14U . . . J 4 20.285 13.325 13.357 1 53.26 ? OAD 14U 401 A 1 
HETATM 5 C CAE 14U . . . J 4 22.659 13.842 15.901 1 54.54 ? CAE 14U 401 A 1 
HETATM 6 C CAF 14U . . . J 4 27.974 3.661 3.439 1 49.4 ? CAF 14U 401 A 1 
HETATM 7 C CAG 14U . . . J 4 28.67 3.828 4.795 1 53.39 ? CAG 14U 401 A 1 
HETATM 8 C CAH 14U . . . J 4 27.696 4.409 5.79 1 51.49 ? CAH 14U 401 A 1 
HETATM 9 C CAI 14U . . . J 4 27.261 5.785 5.345 1 51.55 ? CAI 14U 401 A 1 
HETATM 10 C CAJ 14U . . . J 4 26.188 6.29 6.305 1 48.96 ? CAJ 14U 401 A 1 
HETATM 11 C CAK 14U . . . J 4 25.777 7.711 5.934 1 46.3 ? CAK 14U 401 A 1 
HETATM 12 C CAL 14U . . . J 4 24.714 8.196 6.908 1 46.24 ? CAL 14U 401 A 1 
HETATM 13 C CAM 14U . . . J 4 24.394 9.621 6.511 1 46.13 ? CAM 14U 401 A 1 
HETATM 14 C CAN 14U . . . J 4 23.327 10.251 7.389 1 44.96 ? CAN 14U 401 A 1 
HETATM 15 C CAO 14U . . . J 4 23.691 10.264 8.879 1 38.69 ? CAO 14U 401 A 1 
HETATM 16 C CAP 14U . . . J 4 22.607 10.949 9.694 1 41.62 ? CAP 14U 401 A 1 
HETATM 17 C CAQ 14U . . . J 4 22.916 10.892 11.183 1 40.52 ? CAQ 14U 401 A 1 
HETATM 18 C CAR 14U . . . J 4 21.881 11.741 11.909 1 45.53 ? CAR 14U 401 A 1 
HETATM 19 C CAS 14U . . . J 4 22.09 11.781 13.426 1 47.7 ? CAS 14U 401 A 1 
HETATM 20 C CAT 14U . . . J 4 21.149 12.789 14.06 1 47.51 ? CAT 14U 401 A 1 
HETATM 21 C CAU 14U . . . J 4 21.288 13.202 15.518 1 51.33 ? CAU 14U 401 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    39 
_model_server_stats.query_time_ms           233 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           21 
#