data_4JAP # _model_server_result.job_id a2YSBG0vUVUm8s3GkkfZ9g _model_server_result.datetime_utc '2024-11-05 04:40:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jap # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":402}' # _entry.id 4JAP # _exptl.entry_id 4JAP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.57 _cell.angle_gamma 90 _cell.entry_id 4JAP _cell.length_a 72.011 _cell.length_b 48.627 _cell.length_c 193.656 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JAP _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,K,L 1 1 C,D,H,I,J,M,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C SG CYS 138 B CYS 138 1_555 H CAE 14U . B 14U 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.782 ? covale ? covale2 D SG CYS 138 A CYS 138 1_555 J CAE 14U . A 14U 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.782 ? # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4JAP _atom_sites.fract_transf_matrix[1][1] 0.013887 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001846 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020565 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005209 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 PLM D 1 401 401 PLM PLM . F 2 PLM C 1 401 401 PLM PLM . G 3 COA C 1 402 402 COA COA . H 4 14U B 1 401 401 14U 14U . I 3 COA B 1 402 402 COA COA . J 4 14U A 1 401 401 14U 14U . K 5 HOH D 1 501 501 HOH HOH . K 5 HOH D 2 502 502 HOH HOH . K 5 HOH D 3 503 503 HOH HOH . K 5 HOH D 4 504 504 HOH HOH . K 5 HOH D 5 505 505 HOH HOH . K 5 HOH D 6 506 506 HOH HOH . K 5 HOH D 7 507 507 HOH HOH . K 5 HOH D 8 508 508 HOH HOH . K 5 HOH D 9 509 509 HOH HOH . K 5 HOH D 10 510 510 HOH HOH . K 5 HOH D 11 511 511 HOH HOH . K 5 HOH D 12 512 512 HOH HOH . K 5 HOH D 13 513 513 HOH HOH . K 5 HOH D 14 514 514 HOH HOH . K 5 HOH D 15 515 515 HOH HOH . K 5 HOH D 16 516 516 HOH HOH . K 5 HOH D 17 517 517 HOH HOH . K 5 HOH D 18 518 518 HOH HOH . K 5 HOH D 19 519 519 HOH HOH . K 5 HOH D 20 520 520 HOH HOH . K 5 HOH D 21 521 521 HOH HOH . K 5 HOH D 22 522 522 HOH HOH . K 5 HOH D 23 523 523 HOH HOH . K 5 HOH D 24 524 524 HOH HOH . K 5 HOH D 25 525 525 HOH HOH . K 5 HOH D 26 526 526 HOH HOH . K 5 HOH D 27 527 527 HOH HOH . K 5 HOH D 28 528 528 HOH HOH . K 5 HOH D 29 529 529 HOH HOH . K 5 HOH D 30 530 530 HOH HOH . K 5 HOH D 31 531 531 HOH HOH . K 5 HOH D 32 532 532 HOH HOH . L 5 HOH C 1 501 501 HOH HOH . L 5 HOH C 2 502 502 HOH HOH . L 5 HOH C 3 503 503 HOH HOH . L 5 HOH C 4 504 504 HOH HOH . L 5 HOH C 5 505 505 HOH HOH . L 5 HOH C 6 506 506 HOH HOH . L 5 HOH C 7 507 507 HOH HOH . L 5 HOH C 8 508 508 HOH HOH . L 5 HOH C 9 509 509 HOH HOH . L 5 HOH C 10 510 510 HOH HOH . L 5 HOH C 11 511 511 HOH HOH . L 5 HOH C 12 512 512 HOH HOH . L 5 HOH C 13 513 513 HOH HOH . L 5 HOH C 14 514 514 HOH HOH . L 5 HOH C 15 515 515 HOH HOH . L 5 HOH C 16 516 516 HOH HOH . L 5 HOH C 17 517 517 HOH HOH . L 5 HOH C 18 518 518 HOH HOH . L 5 HOH C 19 519 519 HOH HOH . M 5 HOH B 1 501 501 HOH HOH . M 5 HOH B 2 502 502 HOH HOH . M 5 HOH B 3 503 503 HOH HOH . M 5 HOH B 4 504 504 HOH HOH . M 5 HOH B 5 505 505 HOH HOH . M 5 HOH B 6 506 506 HOH HOH . M 5 HOH B 7 507 507 HOH HOH . M 5 HOH B 8 508 508 HOH HOH . M 5 HOH B 9 509 509 HOH HOH . M 5 HOH B 10 510 510 HOH HOH . M 5 HOH B 11 511 511 HOH HOH . M 5 HOH B 12 512 512 HOH HOH . M 5 HOH B 13 513 513 HOH HOH . M 5 HOH B 14 514 514 HOH HOH . M 5 HOH B 15 515 515 HOH HOH . M 5 HOH B 16 516 516 HOH HOH . M 5 HOH B 17 517 517 HOH HOH . M 5 HOH B 18 518 518 HOH HOH . M 5 HOH B 19 519 519 HOH HOH . M 5 HOH B 20 520 520 HOH HOH . M 5 HOH B 21 521 521 HOH HOH . M 5 HOH B 22 522 522 HOH HOH . M 5 HOH B 23 523 523 HOH HOH . M 5 HOH B 24 524 524 HOH HOH . M 5 HOH B 25 525 525 HOH HOH . M 5 HOH B 26 526 526 HOH HOH . M 5 HOH B 27 527 527 HOH HOH . M 5 HOH B 28 528 528 HOH HOH . M 5 HOH B 29 529 530 HOH HOH . M 5 HOH B 30 530 531 HOH HOH . M 5 HOH B 31 531 532 HOH HOH . M 5 HOH B 32 532 533 HOH HOH . M 5 HOH B 33 533 534 HOH HOH . M 5 HOH B 34 534 535 HOH HOH . M 5 HOH B 35 535 536 HOH HOH . M 5 HOH B 36 536 537 HOH HOH . M 5 HOH B 37 537 538 HOH HOH . M 5 HOH B 38 538 539 HOH HOH . M 5 HOH B 39 539 540 HOH HOH . M 5 HOH B 40 540 541 HOH HOH . M 5 HOH B 41 541 542 HOH HOH . M 5 HOH B 42 542 543 HOH HOH . M 5 HOH B 43 543 544 HOH HOH . M 5 HOH B 44 544 545 HOH HOH . M 5 HOH B 45 545 546 HOH HOH . M 5 HOH B 46 546 547 HOH HOH . M 5 HOH B 47 547 548 HOH HOH . M 5 HOH B 48 548 549 HOH HOH . M 5 HOH B 49 549 550 HOH HOH . M 5 HOH B 50 550 551 HOH HOH . M 5 HOH B 51 551 552 HOH HOH . M 5 HOH B 52 552 553 HOH HOH . M 5 HOH B 53 553 554 HOH HOH . M 5 HOH B 54 554 555 HOH HOH . M 5 HOH B 55 555 556 HOH HOH . M 5 HOH B 56 556 557 HOH HOH . M 5 HOH B 57 557 558 HOH HOH . M 5 HOH B 58 558 559 HOH HOH . M 5 HOH B 59 559 560 HOH HOH . M 5 HOH B 60 560 561 HOH HOH . M 5 HOH B 61 561 562 HOH HOH . M 5 HOH B 62 562 563 HOH HOH . M 5 HOH B 63 563 564 HOH HOH . M 5 HOH B 64 564 565 HOH HOH . M 5 HOH B 65 565 566 HOH HOH . M 5 HOH B 66 566 567 HOH HOH . M 5 HOH B 67 567 568 HOH HOH . M 5 HOH B 68 568 569 HOH HOH . M 5 HOH B 69 569 570 HOH HOH . M 5 HOH B 70 570 571 HOH HOH . M 5 HOH B 71 571 572 HOH HOH . M 5 HOH B 72 572 573 HOH HOH . M 5 HOH B 73 573 574 HOH HOH . M 5 HOH B 74 574 575 HOH HOH . M 5 HOH B 75 575 576 HOH HOH . M 5 HOH B 76 576 577 HOH HOH . M 5 HOH B 77 577 578 HOH HOH . M 5 HOH B 78 578 579 HOH HOH . M 5 HOH B 79 579 580 HOH HOH . M 5 HOH B 80 580 581 HOH HOH . M 5 HOH B 81 581 582 HOH HOH . M 5 HOH B 82 582 583 HOH HOH . M 5 HOH B 83 583 584 HOH HOH . N 5 HOH A 1 501 501 HOH HOH . N 5 HOH A 2 502 502 HOH HOH . N 5 HOH A 3 503 503 HOH HOH . N 5 HOH A 4 504 504 HOH HOH . N 5 HOH A 5 505 505 HOH HOH . N 5 HOH A 6 506 506 HOH HOH . N 5 HOH A 7 507 507 HOH HOH . N 5 HOH A 8 508 508 HOH HOH . N 5 HOH A 9 509 509 HOH HOH . N 5 HOH A 10 510 510 HOH HOH . N 5 HOH A 11 511 511 HOH HOH . N 5 HOH A 12 512 512 HOH HOH . N 5 HOH A 13 513 513 HOH HOH . N 5 HOH A 14 514 514 HOH HOH . N 5 HOH A 15 515 515 HOH HOH . N 5 HOH A 16 516 516 HOH HOH . N 5 HOH A 17 517 517 HOH HOH . N 5 HOH A 18 518 518 HOH HOH . N 5 HOH A 19 519 519 HOH HOH . N 5 HOH A 20 520 520 HOH HOH . N 5 HOH A 21 521 521 HOH HOH . N 5 HOH A 22 522 522 HOH HOH . N 5 HOH A 23 523 523 HOH HOH . N 5 HOH A 24 524 524 HOH HOH . N 5 HOH A 25 525 525 HOH HOH . N 5 HOH A 26 526 526 HOH HOH . N 5 HOH A 27 527 527 HOH HOH . N 5 HOH A 28 528 528 HOH HOH . N 5 HOH A 29 529 529 HOH HOH . N 5 HOH A 30 530 530 HOH HOH . N 5 HOH A 31 531 531 HOH HOH . N 5 HOH A 32 532 532 HOH HOH . N 5 HOH A 33 533 533 HOH HOH . N 5 HOH A 34 534 534 HOH HOH . N 5 HOH A 35 535 535 HOH HOH . N 5 HOH A 36 536 536 HOH HOH . N 5 HOH A 37 537 537 HOH HOH . N 5 HOH A 38 538 538 HOH HOH . N 5 HOH A 39 539 539 HOH HOH . N 5 HOH A 40 540 540 HOH HOH . N 5 HOH A 41 541 541 HOH HOH . N 5 HOH A 42 542 542 HOH HOH . N 5 HOH A 43 543 543 HOH HOH . N 5 HOH A 44 544 544 HOH HOH . N 5 HOH A 45 545 545 HOH HOH . N 5 HOH A 46 546 546 HOH HOH . N 5 HOH A 47 547 547 HOH HOH . N 5 HOH A 48 548 548 HOH HOH . N 5 HOH A 49 549 549 HOH HOH . N 5 HOH A 50 550 550 HOH HOH . N 5 HOH A 51 551 551 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . I 3 -8.457 -5.351 7.678 1 48.1 ? N1A COA 402 B 1 HETATM 2 C C2A COA . . . I 3 -8.87 -6.151 6.655 1 47.3 ? C2A COA 402 B 1 HETATM 3 N N3A COA . . . I 3 -10.187 -6.465 6.555 1 48.53 ? N3A COA 402 B 1 HETATM 4 C C4A COA . . . I 3 -11.086 -5.988 7.47 1 54.25 ? C4A COA 402 B 1 HETATM 5 C C5A COA . . . I 3 -10.653 -5.168 8.544 1 54.75 ? C5A COA 402 B 1 HETATM 6 C C6A COA . . . I 3 -9.302 -4.867 8.615 1 50.8 ? C6A COA 402 B 1 HETATM 7 N N6A COA . . . I 3 -8.821 -4.034 9.711 1 50.46 ? N6A COA 402 B 1 HETATM 8 N N7A COA . . . I 3 -11.736 -4.856 9.278 1 56.19 ? N7A COA 402 B 1 HETATM 9 C C8A COA . . . I 3 -12.817 -5.428 8.731 1 58.7 ? C8A COA 402 B 1 HETATM 10 N N9A COA . . . I 3 -12.451 -6.129 7.639 1 55.97 ? N9A COA 402 B 1 HETATM 11 C C1B COA . . . I 3 -13.324 -6.888 6.73 1 59.92 ? C1B COA 402 B 1 HETATM 12 C C2B COA . . . I 3 -13.965 -8.088 7.341 1 64.17 ? C2B COA 402 B 1 HETATM 13 O O2B COA . . . I 3 -13.158 -9.193 7.271 1 61.82 ? O2B COA 402 B 1 HETATM 14 C C3B COA . . . I 3 -15.142 -8.271 6.452 1 62.62 ? C3B COA 402 B 1 HETATM 15 O O3B COA . . . I 3 -14.779 -9.041 5.357 1 66.71 ? O3B COA 402 B 1 HETATM 16 P P3B COA . . . I 3 -15.859 -9.808 4.476 1 64.72 ? P3B COA 402 B 1 HETATM 17 O O7A COA . . . I 3 -16.214 -11.111 5.224 1 59.72 ? O7A COA 402 B 1 HETATM 18 O O8A COA . . . I 3 -17.105 -8.938 4.27 1 56.22 ? O8A COA 402 B 1 HETATM 19 O O9A COA . . . I 3 -15.221 -10.114 3.122 1 60.1 ? O9A COA 402 B 1 HETATM 20 C C4B COA . . . I 3 -15.506 -6.849 6.075 1 66.37 ? C4B COA 402 B 1 HETATM 21 O O4B COA . . . I 3 -14.325 -6.056 6.157 1 63.49 ? O4B COA 402 B 1 HETATM 22 C C5B COA . . . I 3 -16.62 -6.264 6.887 1 66.2 ? C5B COA 402 B 1 HETATM 23 O O5B COA . . . I 3 -16.159 -5.987 8.189 1 68.13 ? O5B COA 402 B 1 HETATM 24 P P1A COA . . . I 3 -17.189 -6.03 9.384 1 75.69 ? P1A COA 402 B 1 HETATM 25 O O1A COA . . . I 3 -18.437 -6.848 8.906 1 73.34 ? O1A COA 402 B 1 HETATM 26 O O2A COA . . . I 3 -16.449 -6.841 10.482 1 69.88 ? O2A COA 402 B 1 HETATM 27 O O3A COA . . . I 3 -17.589 -4.574 9.913 1 75.76 ? O3A COA 402 B 1 HETATM 28 P P2A COA . . . I 3 -18.756 -3.578 9.403 1 67.71 ? P2A COA 402 B 1 HETATM 29 O O4A COA . . . I 3 -19.834 -4.095 10.583 1 67.29 ? O4A COA 402 B 1 HETATM 30 O O5A COA . . . I 3 -18.92 -4.072 7.816 1 65.68 ? O5A COA 402 B 1 HETATM 31 O O6A COA . . . I 3 -17.966 -2.117 9.737 1 71.69 ? O6A COA 402 B 1 HETATM 32 C CBP COA . . . I 3 -15.957 -1.315 10.878 1 67.99 ? CBP COA 402 B 1 HETATM 33 C CCP COA . . . I 3 -16.572 -1.942 9.606 1 67.49 ? CCP COA 402 B 1 HETATM 34 C CDP COA . . . I 3 -14.789 -0.408 10.497 1 61.68 ? CDP COA 402 B 1 HETATM 35 C CEP COA . . . I 3 -16.997 -0.428 11.555 1 60.24 ? CEP COA 402 B 1 HETATM 36 C CAP COA . . . I 3 -15.469 -2.465 11.786 1 69.32 ? CAP COA 402 B 1 HETATM 37 O OAP COA . . . I 3 -14.763 -3.4 11.036 1 68.32 ? OAP COA 402 B 1 HETATM 38 C C9P COA . . . I 3 -14.616 -2.076 13.006 1 65.99 ? C9P COA 402 B 1 HETATM 39 O O9P COA . . . I 3 -15.089 -1.378 13.909 1 62.19 ? O9P COA 402 B 1 HETATM 40 N N8P COA . . . I 3 -13.227 -2.568 13.077 1 66.79 ? N8P COA 402 B 1 HETATM 41 C C7P COA . . . I 3 -12.342 -2.267 14.215 1 63.46 ? C7P COA 402 B 1 HETATM 42 C C6P COA . . . I 3 -11.889 -0.804 14.237 1 57.7 ? C6P COA 402 B 1 HETATM 43 C C5P COA . . . I 3 -10.505 -0.781 14.85 1 58.3 ? C5P COA 402 B 1 HETATM 44 O O5P COA . . . I 3 -9.885 -1.846 14.879 1 59.21 ? O5P COA 402 B 1 HETATM 45 N N4P COA . . . I 3 -9.899 0.438 15.399 1 59.76 ? N4P COA 402 B 1 HETATM 46 C C3P COA . . . I 3 -8.552 0.404 15.966 1 58.29 ? C3P COA 402 B 1 HETATM 47 C C2P COA . . . I 3 -8.439 0.919 17.365 1 57.16 ? C2P COA 402 B 1 HETATM 48 S S1P COA . . . I 3 -7.894 2.61 17.343 1 68.71 ? S1P COA 402 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 241 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #