data_4JAU # _model_server_result.job_id APwSdU2wIU6q8etm87lWrQ _model_server_result.datetime_utc '2024-11-06 00:11:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jau # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":500}' # _entry.id 4JAU # _exptl.entry_id 4JAU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4JAU _cell.length_a 81.962 _cell.length_b 160.377 _cell.length_c 43.885 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JAU _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 99 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 330 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 128 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 359 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.05 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 4JAU _atom_sites.fract_transf_matrix[1][1] 0.012201 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006235 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022787 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 500 500 ADP ADP . C 3 HOH A 1 601 1 HOH HOH . C 3 HOH A 2 602 2 HOH HOH . C 3 HOH A 3 603 3 HOH HOH . C 3 HOH A 4 604 4 HOH HOH . C 3 HOH A 5 605 5 HOH HOH . C 3 HOH A 6 606 6 HOH HOH . C 3 HOH A 7 607 8 HOH HOH . C 3 HOH A 8 608 9 HOH HOH . C 3 HOH A 9 609 10 HOH HOH . C 3 HOH A 10 610 11 HOH HOH . C 3 HOH A 11 611 12 HOH HOH . C 3 HOH A 12 612 13 HOH HOH . C 3 HOH A 13 613 14 HOH HOH . C 3 HOH A 14 614 15 HOH HOH . C 3 HOH A 15 615 16 HOH HOH . C 3 HOH A 16 616 17 HOH HOH . C 3 HOH A 17 617 18 HOH HOH . C 3 HOH A 18 618 19 HOH HOH . C 3 HOH A 19 619 20 HOH HOH . C 3 HOH A 20 620 21 HOH HOH . C 3 HOH A 21 621 22 HOH HOH . C 3 HOH A 22 622 23 HOH HOH . C 3 HOH A 23 623 24 HOH HOH . C 3 HOH A 24 624 25 HOH HOH . C 3 HOH A 25 625 26 HOH HOH . C 3 HOH A 26 626 27 HOH HOH . C 3 HOH A 27 627 28 HOH HOH . C 3 HOH A 28 628 29 HOH HOH . C 3 HOH A 29 629 30 HOH HOH . C 3 HOH A 30 630 31 HOH HOH . C 3 HOH A 31 631 32 HOH HOH . C 3 HOH A 32 632 33 HOH HOH . C 3 HOH A 33 633 34 HOH HOH . C 3 HOH A 34 634 35 HOH HOH . C 3 HOH A 35 635 36 HOH HOH . C 3 HOH A 36 636 37 HOH HOH . C 3 HOH A 37 637 38 HOH HOH . C 3 HOH A 38 638 39 HOH HOH . C 3 HOH A 39 639 40 HOH HOH . C 3 HOH A 40 640 41 HOH HOH . C 3 HOH A 41 641 42 HOH HOH . C 3 HOH A 42 642 43 HOH HOH . C 3 HOH A 43 643 44 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . B 2 -12.055 18.989 2.486 1 61.55 ? PB ADP 500 A 1 HETATM 2 O O1B ADP . . . B 2 -12.679 20.342 2.179 1 61.52 ? O1B ADP 500 A 1 HETATM 3 O O2B ADP . . . B 2 -10.742 19.022 3.24 1 51.49 ? O2B ADP 500 A 1 HETATM 4 O O3B ADP . . . B 2 -13.088 18.015 3.018 1 55.49 ? O3B ADP 500 A 1 HETATM 5 P PA ADP . . . B 2 -11.212 19.145 -0.282 1 55.33 ? PA ADP 500 A 1 HETATM 6 O O1A ADP . . . B 2 -12.363 20.012 -0.734 1 59.22 ? O1A ADP 500 A 1 HETATM 7 O O2A ADP . . . B 2 -10.725 18.121 -1.267 1 54.46 ? O2A ADP 500 A 1 HETATM 8 O O3A ADP . . . B 2 -11.626 18.349 1.062 1 59.34 ? O3A ADP 500 A 1 HETATM 9 O O5' ADP . . . B 2 -10.007 20.099 0.189 1 54.83 ? O5' ADP 500 A 1 HETATM 10 C C5' ADP . . . B 2 -8.706 19.599 0.456 1 55.98 ? C5' ADP 500 A 1 HETATM 11 C C4' ADP . . . B 2 -7.889 20.654 1.198 1 59.73 ? C4' ADP 500 A 1 HETATM 12 O O4' ADP . . . B 2 -7.634 21.769 0.335 1 64.6 ? O4' ADP 500 A 1 HETATM 13 C C3' ADP . . . B 2 -8.582 21.231 2.427 1 55.75 ? C3' ADP 500 A 1 HETATM 14 O O3' ADP . . . B 2 -8.14 20.589 3.615 1 57.14 ? O3' ADP 500 A 1 HETATM 15 C C2' ADP . . . B 2 -8.15 22.671 2.468 1 56.79 ? C2' ADP 500 A 1 HETATM 16 O O2' ADP . . . B 2 -6.99 22.815 3.282 1 59.17 ? O2' ADP 500 A 1 HETATM 17 C C1' ADP . . . B 2 -7.74 23.004 1.051 1 60.64 ? C1' ADP 500 A 1 HETATM 18 N N9 ADP . . . B 2 -8.772 23.878 0.449 1 60.64 ? N9 ADP 500 A 1 HETATM 19 C C8 ADP . . . B 2 -9.739 23.484 -0.396 1 63.07 ? C8 ADP 500 A 1 HETATM 20 N N7 ADP . . . B 2 -10.527 24.521 -0.776 1 62.76 ? N7 ADP 500 A 1 HETATM 21 C C5 ADP . . . B 2 -10.058 25.619 -0.152 1 66.06 ? C5 ADP 500 A 1 HETATM 22 C C6 ADP . . . B 2 -10.425 27.059 -0.109 1 64.82 ? C6 ADP 500 A 1 HETATM 23 N N6 ADP . . . B 2 -11.478 27.525 -0.828 1 65.28 ? N6 ADP 500 A 1 HETATM 24 N N1 ADP . . . B 2 -9.677 27.875 0.665 1 62.67 ? N1 ADP 500 A 1 HETATM 25 C C2 ADP . . . B 2 -8.624 27.414 1.372 1 66.56 ? C2 ADP 500 A 1 HETATM 26 N N3 ADP . . . B 2 -8.235 26.125 1.389 1 64.98 ? N3 ADP 500 A 1 HETATM 27 C C4 ADP . . . B 2 -8.9 25.193 0.655 1 64.18 ? C4 ADP 500 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 27 #