data_4JBP # _model_server_result.job_id 2zcuBxsvusbTgqniAFe7MA _model_server_result.datetime_utc '2024-12-19 04:41:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jbp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 4JBP # _exptl.entry_id 4JBP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 592.687 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-(4-{2-[(6-{4-[2-(4-hydroxypiperidin-1-yl)ethoxy]phenyl}furo[2,3-d]pyrimidin-4-yl)amino]ethyl}phenyl)-3-phenylurea _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4JBP _cell.length_a 80.81 _cell.length_b 80.81 _cell.length_c 174.308 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JBP _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C34 H36 N6 O4' _chem_comp.formula_weight 592.687 _chem_comp.id YPH _chem_comp.mon_nstd_flag . _chem_comp.name 1-(4-{2-[(6-{4-[2-(4-hydroxypiperidin-1-yl)ethoxy]phenyl}furo[2,3-d]pyrimidin-4-yl)amino]ethyl}phenyl)-3-phenylurea _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O43 C40 YPH sing 376 n n C41 C40 YPH sing 377 n n C41 C42 YPH sing 378 n n C40 C39 YPH sing 379 n n C42 N35 YPH sing 380 n n C39 C38 YPH sing 381 n n N35 C38 YPH sing 382 n n N35 C36 YPH sing 383 n n C36 C37 YPH sing 384 n n O34 C37 YPH sing 385 n n O34 C9 YPH sing 386 n n C8 C9 YPH doub 387 n y C8 C7 YPH sing 388 n y C9 C10 YPH sing 389 n y C7 C6 YPH doub 390 n y C10 C11 YPH doub 391 n y C6 C11 YPH sing 392 n y C6 C2 YPH sing 393 n n C1 C2 YPH doub 394 n y C1 C5 YPH sing 395 n y C2 O3 YPH sing 396 n y N44 C16 YPH sing 397 n n N44 C15 YPH sing 398 n n C5 C15 YPH sing 399 n y C5 C4 YPH doub 400 n y O3 C4 YPH sing 401 n y C16 C17 YPH sing 402 n n C23 C22 YPH doub 403 n y C23 C18 YPH sing 404 n y C15 N14 YPH doub 405 n y C31 C32 YPH doub 406 n y C31 C30 YPH sing 407 n y C17 C18 YPH sing 408 n n C4 N12 YPH sing 409 n y C22 C21 YPH sing 410 n y O33 C25 YPH doub 411 n n C32 C27 YPH sing 412 n y C18 C19 YPH doub 413 n y C30 C29 YPH doub 414 n y N14 C13 YPH sing 415 n y C25 N26 YPH sing 416 n n C25 N24 YPH sing 417 n n C27 N26 YPH sing 418 n n C27 C28 YPH doub 419 n y N12 C13 YPH doub 420 n y C21 N24 YPH sing 421 n n C21 C20 YPH doub 422 n y C29 C28 YPH sing 423 n y C19 C20 YPH sing 424 n y C38 H1 YPH sing 425 n n C38 H2 YPH sing 426 n n C39 H3 YPH sing 427 n n C39 H4 YPH sing 428 n n C40 H5 YPH sing 429 n n O43 H6 YPH sing 430 n n C41 H7 YPH sing 431 n n C41 H8 YPH sing 432 n n C42 H9 YPH sing 433 n n C42 H10 YPH sing 434 n n C36 H12 YPH sing 435 n n C36 H13 YPH sing 436 n n C37 H14 YPH sing 437 n n C37 H15 YPH sing 438 n n C8 H16 YPH sing 439 n n C7 H17 YPH sing 440 n n C10 H18 YPH sing 441 n n C11 H19 YPH sing 442 n n C1 H20 YPH sing 443 n n C13 H21 YPH sing 444 n n N44 H22 YPH sing 445 n n C16 H23 YPH sing 446 n n C16 H24 YPH sing 447 n n C17 H25 YPH sing 448 n n C17 H26 YPH sing 449 n n C19 H27 YPH sing 450 n n C20 H28 YPH sing 451 n n C23 H29 YPH sing 452 n n C22 H30 YPH sing 453 n n N24 H31 YPH sing 454 n n N26 H32 YPH sing 455 n n C28 H33 YPH sing 456 n n C29 H34 YPH sing 457 n n C30 H35 YPH sing 458 n n C31 H36 YPH sing 459 n n C32 H37 YPH sing 460 n n # _atom_sites.entry_id 4JBP _atom_sites.fract_transf_matrix[1][1] 0.012375 _atom_sites.fract_transf_matrix[1][2] 0.007145 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014289 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005737 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 YPH A 1 501 1 YPH UNL . C 3 HOH A 1 601 1 HOH HOH . C 3 HOH A 2 602 2 HOH HOH . C 3 HOH A 3 603 3 HOH HOH . C 3 HOH A 4 604 4 HOH HOH . C 3 HOH A 5 605 5 HOH HOH . C 3 HOH A 6 606 6 HOH HOH . C 3 HOH A 7 607 7 HOH HOH . C 3 HOH A 8 608 8 HOH HOH . C 3 HOH A 9 609 9 HOH HOH . C 3 HOH A 10 610 10 HOH HOH . C 3 HOH A 11 611 11 HOH HOH . C 3 HOH A 12 612 12 HOH HOH . C 3 HOH A 13 613 13 HOH HOH . C 3 HOH A 14 614 14 HOH HOH . C 3 HOH A 15 615 15 HOH HOH . C 3 HOH A 16 616 16 HOH HOH . C 3 HOH A 17 617 17 HOH HOH . C 3 HOH A 18 618 18 HOH HOH . C 3 HOH A 19 619 19 HOH HOH . C 3 HOH A 20 620 20 HOH HOH . C 3 HOH A 21 621 21 HOH HOH . C 3 HOH A 22 622 22 HOH HOH . C 3 HOH A 23 623 23 HOH HOH . C 3 HOH A 24 624 24 HOH HOH . C 3 HOH A 25 625 25 HOH HOH . C 3 HOH A 26 626 26 HOH HOH . C 3 HOH A 27 627 27 HOH HOH . C 3 HOH A 28 628 28 HOH HOH . C 3 HOH A 29 629 29 HOH HOH . C 3 HOH A 30 630 30 HOH HOH . C 3 HOH A 31 631 31 HOH HOH . C 3 HOH A 32 632 32 HOH HOH . C 3 HOH A 33 633 33 HOH HOH . C 3 HOH A 34 634 34 HOH HOH . C 3 HOH A 35 635 35 HOH HOH . C 3 HOH A 36 636 36 HOH HOH . C 3 HOH A 37 637 37 HOH HOH . C 3 HOH A 38 638 38 HOH HOH . C 3 HOH A 39 639 39 HOH HOH . C 3 HOH A 40 640 40 HOH HOH . C 3 HOH A 41 641 41 HOH HOH . C 3 HOH A 42 642 42 HOH HOH . C 3 HOH A 43 643 43 HOH HOH . C 3 HOH A 44 644 44 HOH HOH . C 3 HOH A 45 645 45 HOH HOH . C 3 HOH A 46 646 46 HOH HOH . C 3 HOH A 47 647 47 HOH HOH . C 3 HOH A 48 648 48 HOH HOH . C 3 HOH A 49 649 49 HOH HOH . C 3 HOH A 50 650 50 HOH HOH . C 3 HOH A 51 651 51 HOH HOH . C 3 HOH A 52 652 52 HOH HOH . C 3 HOH A 53 653 53 HOH HOH . C 3 HOH A 54 654 54 HOH HOH . C 3 HOH A 55 655 55 HOH HOH . C 3 HOH A 56 656 56 HOH HOH . C 3 HOH A 57 657 57 HOH HOH . C 3 HOH A 58 658 58 HOH HOH . C 3 HOH A 59 659 59 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C38 YPH . . . B 2 1.562 38.513 2.214 1 61.04 ? C38 YPH 501 A 1 HETATM 2 C C39 YPH . . . B 2 2.708 38.814 1.254 1 68.74 ? C39 YPH 501 A 1 HETATM 3 C C40 YPH . . . B 2 2.222 39.547 -0.012 1 83.48 ? C40 YPH 501 A 1 HETATM 4 O O43 YPH . . . B 2 3.286 39.614 -0.972 1 89.95 ? O43 YPH 501 A 1 HETATM 5 C C41 YPH . . . B 2 1.018 38.817 -0.628 1 71.12 ? C41 YPH 501 A 1 HETATM 6 C C42 YPH . . . B 2 -0.052 38.545 0.435 1 64.42 ? C42 YPH 501 A 1 HETATM 7 N N35 YPH . . . B 2 0.53 37.731 1.516 1 52.7 ? N35 YPH 501 A 1 HETATM 8 C C36 YPH . . . B 2 -0.522 37.318 2.451 1 46.86 ? C36 YPH 501 A 1 HETATM 9 C C37 YPH . . . B 2 0.052 36.378 3.502 1 45.03 ? C37 YPH 501 A 1 HETATM 10 O O34 YPH . . . B 2 0.832 35.313 2.87 1 30.61 ? O34 YPH 501 A 1 HETATM 11 C C9 YPH . . . B 2 1.49 34.508 3.743 1 26.58 ? C9 YPH 501 A 1 HETATM 12 C C8 YPH . . . B 2 2.332 33.513 3.251 1 24.39 ? C8 YPH 501 A 1 HETATM 13 C C7 YPH . . . B 2 3.01 32.674 4.133 1 26.39 ? C7 YPH 501 A 1 HETATM 14 C C10 YPH . . . B 2 1.318 34.662 5.12 1 25.95 ? C10 YPH 501 A 1 HETATM 15 C C11 YPH . . . B 2 2.008 33.832 5.995 1 24.25 ? C11 YPH 501 A 1 HETATM 16 C C6 YPH . . . B 2 2.849 32.826 5.514 1 24.3 ? C6 YPH 501 A 1 HETATM 17 C C2 YPH . . . B 2 3.507 32.008 6.438 1 25.35 ? C2 YPH 501 A 1 HETATM 18 O O3 YPH . . . B 2 3.28 32.224 7.76 1 26.17 ? O3 YPH 501 A 1 HETATM 19 C C1 YPH . . . B 2 4.399 31.002 6.297 1 26.46 ? C1 YPH 501 A 1 HETATM 20 C C5 YPH . . . B 2 4.732 30.571 7.53 1 30.51 ? C5 YPH 501 A 1 HETATM 21 C C4 YPH . . . B 2 4.022 31.344 8.457 1 27.93 ? C4 YPH 501 A 1 HETATM 22 N N12 YPH . . . B 2 4.136 31.147 9.772 1 27.52 ? N12 YPH 501 A 1 HETATM 23 C C13 YPH . . . B 2 4.94 30.192 10.217 1 30.76 ? C13 YPH 501 A 1 HETATM 24 N N14 YPH . . . B 2 5.639 29.433 9.382 1 30.22 ? N14 YPH 501 A 1 HETATM 25 C C15 YPH . . . B 2 5.579 29.586 8.044 1 29.65 ? C15 YPH 501 A 1 HETATM 26 N N44 YPH . . . B 2 6.333 28.787 7.276 1 33.7 ? N44 YPH 501 A 1 HETATM 27 C C16 YPH . . . B 2 7.185 27.722 7.872 1 34.88 ? C16 YPH 501 A 1 HETATM 28 C C17 YPH . . . B 2 8.544 28.265 8.384 1 39.78 ? C17 YPH 501 A 1 HETATM 29 C C18 YPH . . . B 2 9.429 27.105 8.86 1 42.62 ? C18 YPH 501 A 1 HETATM 30 C C19 YPH . . . B 2 9.282 26.607 10.149 1 44.95 ? C19 YPH 501 A 1 HETATM 31 C C20 YPH . . . B 2 10.059 25.551 10.612 1 40.94 ? C20 YPH 501 A 1 HETATM 32 C C23 YPH . . . B 2 10.372 26.527 8.018 1 41.26 ? C23 YPH 501 A 1 HETATM 33 C C22 YPH . . . B 2 11.142 25.459 8.476 1 39.63 ? C22 YPH 501 A 1 HETATM 34 C C21 YPH . . . B 2 10.988 24.955 9.774 1 46.12 ? C21 YPH 501 A 1 HETATM 35 N N24 YPH . . . B 2 11.744 23.945 10.247 1 48.37 ? N24 YPH 501 A 1 HETATM 36 C C25 YPH . . . B 2 11.934 22.772 9.615 1 51.42 ? C25 YPH 501 A 1 HETATM 37 O O33 YPH . . . B 2 11.393 22.511 8.546 1 55.13 ? O33 YPH 501 A 1 HETATM 38 N N26 YPH . . . B 2 12.755 21.9 10.222 1 58.68 ? N26 YPH 501 A 1 HETATM 39 C C27 YPH . . . B 2 13.086 20.689 9.752 1 58.85 ? C27 YPH 501 A 1 HETATM 40 C C28 YPH . . . B 2 14.017 19.94 10.475 1 70.77 ? C28 YPH 501 A 1 HETATM 41 C C29 YPH . . . B 2 14.417 18.675 10.045 1 65.65 ? C29 YPH 501 A 1 HETATM 42 C C30 YPH . . . B 2 13.887 18.147 8.871 1 70.87 ? C30 YPH 501 A 1 HETATM 43 C C31 YPH . . . B 2 12.957 18.888 8.142 1 73.72 ? C31 YPH 501 A 1 HETATM 44 C C32 YPH . . . B 2 12.56 20.154 8.578 1 67.15 ? C32 YPH 501 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 231 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 44 #