data_4JBQ # _model_server_result.job_id Zr0gTwNfwaHbyKd30kOlmw _model_server_result.datetime_utc '2024-10-14 22:15:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jbq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 4JBQ # _exptl.entry_id 4JBQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 464.586 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CYCLOPROPANECARBOXYLIC ACID {4-[4-(4-METHYL-PIPERAZIN-1-YL)-6-(5-METHYL-2H-PYRAZOL-3-YLAMINO)-PYRIMIDIN-2-YLSULFANYL]-PHENYL}-AMIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4JBQ _cell.length_a 82.414 _cell.length_b 82.414 _cell.length_c 170.349 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JBQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H28 N8 O S' _chem_comp.formula_weight 464.586 _chem_comp.id VX6 _chem_comp.mon_nstd_flag . _chem_comp.name 'CYCLOPROPANECARBOXYLIC ACID {4-[4-(4-METHYL-PIPERAZIN-1-YL)-6-(5-METHYL-2H-PYRAZOL-3-YLAMINO)-PYRIMIDIN-2-YLSULFANYL]-PHENYL}-AMIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 VX6 sing 376 n n N1 C6 VX6 sing 377 n n N1 C7 VX6 sing 378 n n C2 C3 VX6 sing 379 n n C2 H21 VX6 sing 380 n n C2 H22 VX6 sing 381 n n C3 N4 VX6 sing 382 n n C3 H31 VX6 sing 383 n n C3 H32 VX6 sing 384 n n N4 C5 VX6 sing 385 n n N4 C8 VX6 sing 386 n n C5 C6 VX6 sing 387 n n C5 H51 VX6 sing 388 n n C5 H52 VX6 sing 389 n n C6 H61 VX6 sing 390 n n C6 H62 VX6 sing 391 n n C7 H71 VX6 sing 392 n n C7 H72 VX6 sing 393 n n C7 H73 VX6 sing 394 n n C8 C9 VX6 sing 395 n y C8 N13 VX6 doub 396 n y C9 C10 VX6 doub 397 n y C9 H9 VX6 sing 398 n n C10 N11 VX6 sing 399 n y C10 N14 VX6 sing 400 n n N11 C12 VX6 doub 401 n y C12 N13 VX6 sing 402 n y C12 S23 VX6 sing 403 n n N14 C15 VX6 sing 404 n n N14 H14 VX6 sing 405 n n C15 C17 VX6 doub 406 n y C15 N20 VX6 sing 407 n y C17 C18 VX6 sing 408 n y C17 H17 VX6 sing 409 n n C18 N19 VX6 doub 410 n y C18 C21 VX6 sing 411 n n N19 N20 VX6 sing 412 n y N20 H20 VX6 sing 413 n n C21 H211 VX6 sing 414 n n C21 H212 VX6 sing 415 n n C21 H213 VX6 sing 416 n n S23 C24 VX6 sing 417 n n C24 C25 VX6 sing 418 n y C24 C29 VX6 doub 419 n y C25 C26 VX6 doub 420 n y C25 H25 VX6 sing 421 n n C26 C27 VX6 sing 422 n y C26 H26 VX6 sing 423 n n C27 C28 VX6 doub 424 n y C27 N30 VX6 sing 425 n n C28 C29 VX6 sing 426 n y C28 H28 VX6 sing 427 n n C29 H29 VX6 sing 428 n n N30 C31 VX6 sing 429 n n N30 H30 VX6 sing 430 n n C31 O32 VX6 doub 431 n n C31 C33 VX6 sing 432 n n C33 C34 VX6 sing 433 n n C33 C35 VX6 sing 434 n n C33 H33 VX6 sing 435 n n C34 C35 VX6 sing 436 n n C34 H341 VX6 sing 437 n n C34 H342 VX6 sing 438 n n C35 H351 VX6 sing 439 n n C35 H352 VX6 sing 440 n n # _atom_sites.entry_id 4JBQ _atom_sites.fract_transf_matrix[1][1] 0.012134 _atom_sites.fract_transf_matrix[1][2] 0.007005 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014011 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00587 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 VX6 A 1 501 400 VX6 VX6 . C 3 HOH A 1 601 1 HOH HOH . C 3 HOH A 2 602 2 HOH HOH . C 3 HOH A 3 603 3 HOH HOH . C 3 HOH A 4 604 4 HOH HOH . C 3 HOH A 5 605 5 HOH HOH . C 3 HOH A 6 606 6 HOH HOH . C 3 HOH A 7 607 7 HOH HOH . C 3 HOH A 8 608 8 HOH HOH . C 3 HOH A 9 609 9 HOH HOH . C 3 HOH A 10 610 10 HOH HOH . C 3 HOH A 11 611 11 HOH HOH . C 3 HOH A 12 612 12 HOH HOH . C 3 HOH A 13 613 13 HOH HOH . C 3 HOH A 14 614 14 HOH HOH . C 3 HOH A 15 615 15 HOH HOH . C 3 HOH A 16 616 16 HOH HOH . C 3 HOH A 17 617 17 HOH HOH . C 3 HOH A 18 618 18 HOH HOH . C 3 HOH A 19 619 19 HOH HOH . C 3 HOH A 20 620 20 HOH HOH . C 3 HOH A 21 621 21 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 VX6 . . . B 2 0.333 36.058 0.718 1 47.37 ? N1 VX6 501 A 1 HETATM 2 C C2 VX6 . . . B 2 0.697 36.612 2.045 1 46.37 ? C2 VX6 501 A 1 HETATM 3 C C3 VX6 . . . B 2 0.794 35.476 3.086 1 43.62 ? C3 VX6 501 A 1 HETATM 4 N N4 VX6 . . . B 2 1.61 34.345 2.554 1 42.15 ? N4 VX6 501 A 1 HETATM 5 C C5 VX6 . . . B 2 1.56 33.958 1.103 1 42.89 ? C5 VX6 501 A 1 HETATM 6 C C6 VX6 . . . B 2 1.409 35.185 0.21 1 47.07 ? C6 VX6 501 A 1 HETATM 7 C C7 VX6 . . . B 2 0.212 37.168 -0.234 1 46.85 ? C7 VX6 501 A 1 HETATM 8 C C8 VX6 . . . B 2 2.324 33.485 3.405 1 38.75 ? C8 VX6 501 A 1 HETATM 9 C C9 VX6 . . . B 2 2.262 33.539 4.806 1 38.7 ? C9 VX6 501 A 1 HETATM 10 C C10 VX6 . . . B 2 2.996 32.598 5.537 1 36.45 ? C10 VX6 501 A 1 HETATM 11 N N11 VX6 . . . B 2 3.725 31.666 4.875 1 37.54 ? N11 VX6 501 A 1 HETATM 12 C C12 VX6 . . . B 2 3.764 31.64 3.528 1 39.03 ? C12 VX6 501 A 1 HETATM 13 N N13 VX6 . . . B 2 3.061 32.538 2.822 1 37.17 ? N13 VX6 501 A 1 HETATM 14 N N14 VX6 . . . B 2 2.956 32.65 6.869 1 35.41 ? N14 VX6 501 A 1 HETATM 15 C C15 VX6 . . . B 2 3.449 31.718 7.727 1 36.11 ? C15 VX6 501 A 1 HETATM 16 C C17 VX6 . . . B 2 4.029 30.537 7.44 1 36.02 ? C17 VX6 501 A 1 HETATM 17 C C18 VX6 . . . B 2 4.332 30.037 8.634 1 36.05 ? C18 VX6 501 A 1 HETATM 18 N N19 VX6 . . . B 2 3.953 30.888 9.583 1 35.62 ? N19 VX6 501 A 1 HETATM 19 N N20 VX6 . . . B 2 3.439 31.883 9.049 1 34.41 ? N20 VX6 501 A 1 HETATM 20 C C21 VX6 . . . B 2 5.024 28.692 8.905 1 34.49 ? C21 VX6 501 A 1 HETATM 21 S S23 VX6 . . . B 2 4.689 30.442 2.612 1 42.19 ? S23 VX6 501 A 1 HETATM 22 C C24 VX6 . . . B 2 5.747 29.689 3.825 1 45.84 ? C24 VX6 501 A 1 HETATM 23 C C25 VX6 . . . B 2 6.992 30.263 4.071 1 45.88 ? C25 VX6 501 A 1 HETATM 24 C C26 VX6 . . . B 2 7.86 29.716 5.007 1 46.19 ? C26 VX6 501 A 1 HETATM 25 C C27 VX6 . . . B 2 7.497 28.573 5.71 1 49.07 ? C27 VX6 501 A 1 HETATM 26 C C28 VX6 . . . B 2 6.235 27.995 5.475 1 49.66 ? C28 VX6 501 A 1 HETATM 27 C C29 VX6 . . . B 2 5.361 28.544 4.529 1 46.29 ? C29 VX6 501 A 1 HETATM 28 N N30 VX6 . . . B 2 8.375 28.143 6.631 1 50.69 ? N30 VX6 501 A 1 HETATM 29 C C31 VX6 . . . B 2 8.253 27.139 7.504 1 52.85 ? C31 VX6 501 A 1 HETATM 30 O O32 VX6 . . . B 2 7.343 26.307 7.514 1 54.45 ? O32 VX6 501 A 1 HETATM 31 C C33 VX6 . . . B 2 9.414 27.067 8.507 1 52.21 ? C33 VX6 501 A 1 HETATM 32 C C34 VX6 . . . B 2 9.274 26.017 9.614 1 53.52 ? C34 VX6 501 A 1 HETATM 33 C C35 VX6 . . . B 2 10.286 25.809 8.485 1 58.03 ? C35 VX6 501 A 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 41 _model_server_stats.query_time_ms 641 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 33 #