data_4JBV # _model_server_result.job_id j7KeMRfm2d9FKox23NIChQ _model_server_result.datetime_utc '2024-10-14 00:23:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jbv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 4JBV # _exptl.entry_id 4JBV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 444.572 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[(1-methylpiperidin-4-yl)methyl]-3-[6-(2-methylpropoxy)naphthalen-2-yl]pyrazolo[3,4-d]pyrimidin-4-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.95 _cell.angle_gamma 90 _cell.entry_id 4JBV _cell.length_a 48.21 _cell.length_b 72.28 _cell.length_c 66.59 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JBV _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C26 H32 N6 O' _chem_comp.formula_weight 444.572 _chem_comp.id V68 _chem_comp.mon_nstd_flag . _chem_comp.name 1-[(1-methylpiperidin-4-yl)methyl]-3-[6-(2-methylpropoxy)naphthalen-2-yl]pyrazolo[3,4-d]pyrimidin-4-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAO CAM V68 sing 358 n n CAO NBF V68 sing 359 n n CAM CBE V68 sing 360 n n CAC NBF V68 sing 361 n n NBF CAN V68 sing 362 n n CBE CAQ V68 sing 363 n n CBE CAL V68 sing 364 n n CAN CAL V68 sing 365 n n CAQ NBG V68 sing 366 n n N3 C2 V68 doub 367 n y N3 C4 V68 sing 368 n y C2 N1 V68 sing 369 n y NBG C4 V68 sing 370 n y NBG NAT V68 sing 371 n y C4 C5 V68 doub 372 n y CAF CAH V68 doub 373 n y CAF CAW V68 sing 374 n y NAT CAY V68 doub 375 n y N1 C6 V68 doub 376 n y C5 C6 V68 sing 377 n y C5 CAY V68 sing 378 n y C6 NAD V68 sing 379 n n CAY CAW V68 sing 380 n n CAH CAZ V68 sing 381 n y CAW CAK V68 doub 382 n y CAZ CAJ V68 doub 383 n y CAZ CBA V68 sing 384 n y CAJ CAV V68 sing 385 n y CAA CBD V68 sing 386 n n CAK CBA V68 sing 387 n y CBA CAG V68 doub 388 n y CAP CBD V68 sing 389 n n CAP OAU V68 sing 390 n n CBD CAB V68 sing 391 n n CAV OAU V68 sing 392 n n CAV CAE V68 doub 393 n y CAG CAE V68 sing 394 n y CAL H1 V68 sing 395 n n CAL H2 V68 sing 396 n n CAN H3 V68 sing 397 n n CAN H4 V68 sing 398 n n CAC H6 V68 sing 399 n n CAC H7 V68 sing 400 n n CAC H8 V68 sing 401 n n CAO H9 V68 sing 402 n n CAO H10 V68 sing 403 n n CAM H11 V68 sing 404 n n CAM H12 V68 sing 405 n n CBE H13 V68 sing 406 n n CAQ H14 V68 sing 407 n n CAQ H15 V68 sing 408 n n C2 H16 V68 sing 409 n n NAD H17 V68 sing 410 n n NAD H18 V68 sing 411 n n CAK H19 V68 sing 412 n n CAF H20 V68 sing 413 n n CAH H21 V68 sing 414 n n CAJ H22 V68 sing 415 n n CAG H23 V68 sing 416 n n CAE H24 V68 sing 417 n n CAP H25 V68 sing 418 n n CAP H26 V68 sing 419 n n CBD H27 V68 sing 420 n n CAB H28 V68 sing 421 n n CAB H29 V68 sing 422 n n CAB H30 V68 sing 423 n n CAA H31 V68 sing 424 n n CAA H32 V68 sing 425 n n CAA H33 V68 sing 426 n n # _atom_sites.entry_id 4JBV _atom_sites.fract_transf_matrix[1][1] 0.020743 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005152 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013835 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015474 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 V68 A 1 601 1 V68 V68 . C 3 HOH A 1 701 1 HOH HOH . C 3 HOH A 2 702 2 HOH HOH . C 3 HOH A 3 703 3 HOH HOH . C 3 HOH A 4 704 4 HOH HOH . C 3 HOH A 5 705 5 HOH HOH . C 3 HOH A 6 706 6 HOH HOH . C 3 HOH A 7 707 7 HOH HOH . C 3 HOH A 8 708 8 HOH HOH . C 3 HOH A 9 709 9 HOH HOH . C 3 HOH A 10 710 10 HOH HOH . C 3 HOH A 11 711 11 HOH HOH . C 3 HOH A 12 712 12 HOH HOH . C 3 HOH A 13 713 13 HOH HOH . C 3 HOH A 14 714 14 HOH HOH . C 3 HOH A 15 715 15 HOH HOH . C 3 HOH A 16 716 16 HOH HOH . C 3 HOH A 17 717 17 HOH HOH . C 3 HOH A 18 718 18 HOH HOH . C 3 HOH A 19 719 19 HOH HOH . C 3 HOH A 20 720 20 HOH HOH . C 3 HOH A 21 721 21 HOH HOH . C 3 HOH A 22 722 22 HOH HOH . C 3 HOH A 23 723 23 HOH HOH . C 3 HOH A 24 724 24 HOH HOH . C 3 HOH A 25 725 25 HOH HOH . C 3 HOH A 26 726 26 HOH HOH . C 3 HOH A 27 727 27 HOH HOH . C 3 HOH A 28 728 28 HOH HOH . C 3 HOH A 29 729 29 HOH HOH . C 3 HOH A 30 730 30 HOH HOH . C 3 HOH A 31 731 31 HOH HOH . C 3 HOH A 32 732 32 HOH HOH . C 3 HOH A 33 733 33 HOH HOH . C 3 HOH A 34 734 34 HOH HOH . C 3 HOH A 35 735 35 HOH HOH . C 3 HOH A 36 736 36 HOH HOH . C 3 HOH A 37 737 37 HOH HOH . C 3 HOH A 38 738 38 HOH HOH . C 3 HOH A 39 739 39 HOH HOH . C 3 HOH A 40 740 40 HOH HOH . C 3 HOH A 41 741 41 HOH HOH . C 3 HOH A 42 742 42 HOH HOH . C 3 HOH A 43 743 43 HOH HOH . C 3 HOH A 44 744 44 HOH HOH . C 3 HOH A 45 745 45 HOH HOH . C 3 HOH A 46 746 46 HOH HOH . C 3 HOH A 47 747 47 HOH HOH . C 3 HOH A 48 748 48 HOH HOH . C 3 HOH A 49 749 49 HOH HOH . C 3 HOH A 50 750 50 HOH HOH . C 3 HOH A 51 751 51 HOH HOH . C 3 HOH A 52 752 52 HOH HOH . C 3 HOH A 53 753 53 HOH HOH . C 3 HOH A 54 754 54 HOH HOH . C 3 HOH A 55 755 55 HOH HOH . C 3 HOH A 56 756 56 HOH HOH . C 3 HOH A 57 757 57 HOH HOH . C 3 HOH A 58 758 58 HOH HOH . C 3 HOH A 59 759 59 HOH HOH . C 3 HOH A 60 760 60 HOH HOH . C 3 HOH A 61 761 61 HOH HOH . C 3 HOH A 62 762 62 HOH HOH . C 3 HOH A 63 763 63 HOH HOH . C 3 HOH A 64 764 64 HOH HOH . C 3 HOH A 65 765 65 HOH HOH . C 3 HOH A 66 766 66 HOH HOH . C 3 HOH A 67 767 67 HOH HOH . C 3 HOH A 68 768 68 HOH HOH . C 3 HOH A 69 769 69 HOH HOH . C 3 HOH A 70 770 70 HOH HOH . C 3 HOH A 71 771 71 HOH HOH . C 3 HOH A 72 772 72 HOH HOH . C 3 HOH A 73 773 73 HOH HOH . C 3 HOH A 74 774 74 HOH HOH . C 3 HOH A 75 775 75 HOH HOH . C 3 HOH A 76 776 76 HOH HOH . C 3 HOH A 77 777 77 HOH HOH . C 3 HOH A 78 778 78 HOH HOH . C 3 HOH A 79 779 79 HOH HOH . C 3 HOH A 80 780 80 HOH HOH . C 3 HOH A 81 781 81 HOH HOH . C 3 HOH A 82 782 82 HOH HOH . C 3 HOH A 83 783 83 HOH HOH . C 3 HOH A 84 784 84 HOH HOH . C 3 HOH A 85 785 85 HOH HOH . C 3 HOH A 86 786 86 HOH HOH . C 3 HOH A 87 787 87 HOH HOH . C 3 HOH A 88 788 88 HOH HOH . C 3 HOH A 89 789 89 HOH HOH . C 3 HOH A 90 790 90 HOH HOH . C 3 HOH A 91 791 91 HOH HOH . C 3 HOH A 92 792 92 HOH HOH . C 3 HOH A 93 793 93 HOH HOH . C 3 HOH A 94 794 94 HOH HOH . C 3 HOH A 95 795 95 HOH HOH . C 3 HOH A 96 796 96 HOH HOH . C 3 HOH A 97 797 97 HOH HOH . C 3 HOH A 98 798 98 HOH HOH . C 3 HOH A 99 799 99 HOH HOH . C 3 HOH A 100 800 100 HOH HOH . C 3 HOH A 101 801 101 HOH HOH . C 3 HOH A 102 802 102 HOH HOH . C 3 HOH A 103 803 103 HOH HOH . C 3 HOH A 104 804 104 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAL V68 . . . B 2 17.705 18.757 62.128 1 55.22 ? CAL V68 601 A 1 HETATM 2 C CAN V68 . . . B 2 18.366 20.02 61.572 1 60.81 ? CAN V68 601 A 1 HETATM 3 N NBF V68 . . . B 2 19.564 19.656 60.806 1 62.04 ? NBF V68 601 A 1 HETATM 4 C CAC V68 . . . B 2 20.335 20.87 60.483 1 54.55 ? CAC V68 601 A 1 HETATM 5 C CAO V68 . . . B 2 19.108 18.98 59.586 1 57.52 ? CAO V68 601 A 1 HETATM 6 C CAM V68 . . . B 2 18.452 17.639 59.939 1 56.34 ? CAM V68 601 A 1 HETATM 7 C CBE V68 . . . B 2 17.404 17.681 61.074 1 50.14 ? CBE V68 601 A 1 HETATM 8 C CAQ V68 . . . B 2 17.519 16.334 61.774 1 37.51 ? CAQ V68 601 A 1 HETATM 9 N NBG V68 . . . B 2 16.298 15.59 62.14 1 28.31 ? NBG V68 601 A 1 HETATM 10 N NAT V68 . . . B 2 15.17 16.011 62.441 1 21.53 ? NAT V68 601 A 1 HETATM 11 C C4 V68 . . . B 2 16.378 14.277 62.214 1 24.68 ? C4 V68 601 A 1 HETATM 12 N N3 V68 . . . B 2 17.393 13.438 61.984 1 20.44 ? N3 V68 601 A 1 HETATM 13 C C2 V68 . . . B 2 17.209 12.132 62.124 1 21.8 ? C2 V68 601 A 1 HETATM 14 N N1 V68 . . . B 2 16.035 11.624 62.485 1 22.06 ? N1 V68 601 A 1 HETATM 15 C C6 V68 . . . B 2 14.976 12.419 62.735 1 22.26 ? C6 V68 601 A 1 HETATM 16 N NAD V68 . . . B 2 13.823 11.841 63.081 1 23.65 ? NAD V68 601 A 1 HETATM 17 C C5 V68 . . . B 2 15.132 13.806 62.599 1 21.24 ? C5 V68 601 A 1 HETATM 18 C CAY V68 . . . B 2 14.375 14.973 62.743 1 20.91 ? CAY V68 601 A 1 HETATM 19 C CAW V68 . . . B 2 13.023 15.007 63.118 1 18.55 ? CAW V68 601 A 1 HETATM 20 C CAK V68 . . . B 2 12.558 14.285 64.219 1 19.2 ? CAK V68 601 A 1 HETATM 21 C CAF V68 . . . B 2 12.126 15.794 62.39 1 18.48 ? CAF V68 601 A 1 HETATM 22 C CAH V68 . . . B 2 10.778 15.856 62.749 1 19.45 ? CAH V68 601 A 1 HETATM 23 C CAZ V68 . . . B 2 10.315 15.124 63.835 1 20.47 ? CAZ V68 601 A 1 HETATM 24 C CAJ V68 . . . B 2 8.966 15.181 64.192 1 19.93 ? CAJ V68 601 A 1 HETATM 25 C CBA V68 . . . B 2 11.207 14.345 64.576 1 19.33 ? CBA V68 601 A 1 HETATM 26 C CAG V68 . . . B 2 10.735 13.622 65.664 1 18.63 ? CAG V68 601 A 1 HETATM 27 C CAE V68 . . . B 2 9.39 13.668 66.014 1 20.37 ? CAE V68 601 A 1 HETATM 28 C CAV V68 . . . B 2 8.495 14.444 65.28 1 22.42 ? CAV V68 601 A 1 HETATM 29 O OAU V68 . . . B 2 7.175 14.456 65.656 1 20.14 ? OAU V68 601 A 1 HETATM 30 C CAP V68 . . . B 2 6.242 14.959 64.674 1 21.59 ? CAP V68 601 A 1 HETATM 31 C CBD V68 . . . B 2 4.839 14.42 65.006 1 24.09 ? CBD V68 601 A 1 HETATM 32 C CAB V68 . . . B 2 4.553 14.479 66.515 1 23.15 ? CAB V68 601 A 1 HETATM 33 C CAA V68 . . . B 2 3.753 15.153 64.207 1 25.47 ? CAA V68 601 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 33 #