data_4JC0 # _model_server_result.job_id fXu43Lu0sndC97UaqDGfSg _model_server_result.datetime_utc '2024-12-27 02:12:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jc0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 4JC0 # _exptl.entry_id 4JC0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 863.605 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IRON/SULFUR PENTA-SULFIDE CONNECTED CLUSTERS' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4JC0 _cell.length_a 59.721 _cell.length_b 86.948 _cell.length_c 172.795 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JC0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C 1 1 B,D 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 10 A CYS 10 1_555 C FE7 FS5 . A FS5 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc2 A SG CYS 46 A CYS 46 1_555 C FE5 FS5 . A FS5 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc3 A SG CYS 79 A CYS 79 1_555 C FE6 FS5 . A FS5 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc4 A SG CYS 148 A CYS 148 1_555 C FE9 FS5 . A FS5 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc5 A SG CYS 152 A CYS 152 1_555 C FE1 FS5 . A FS5 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc6 A SG CYS 155 A CYS 155 1_555 C FE2 FS5 . A FS5 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc7 B SG CYS 10 B CYS 10 1_555 D FE7 FS5 . B FS5 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc8 B SG CYS 46 B CYS 46 1_555 D FE5 FS5 . B FS5 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc9 B SG CYS 79 B CYS 79 1_555 D FE6 FS5 . B FS5 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc10 B SG CYS 148 B CYS 148 1_555 D FE9 FS5 . B FS5 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc11 B SG CYS 152 B CYS 152 1_555 D FE1 FS5 . B FS5 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc12 B SG CYS 155 B CYS 155 1_555 D FE2 FS5 . B FS5 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? # _chem_comp.formula 'Fe8 S13' _chem_comp.formula_weight 863.605 _chem_comp.id FS5 _chem_comp.mon_nstd_flag . _chem_comp.name 'IRON/SULFUR PENTA-SULFIDE CONNECTED CLUSTERS' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'PENTASULFIDE-LINKED IRON CUBANES' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S8 FE6 FS5 sing 83 n n S8 FE7 FS5 sing 84 n n S8 FE8 FS5 sing 85 n n FE6 S6 FS5 sing 86 n n FE6 S5 FS5 sing 87 n n FE7 S6 FS5 sing 88 n n FE7 S7 FS5 sing 89 n n S6 FE5 FS5 sing 90 n n FE8 S7 FS5 sing 91 n n FE8 S5 FS5 sing 92 n n FE8 S9 FS5 sing 93 n n S7 FE5 FS5 sing 94 n n FE5 S5 FS5 sing 95 n n FE4 S4 FS5 sing 96 n n FE4 S1 FS5 sing 97 n n FE4 S3 FS5 sing 98 n n FE4 S13 FS5 sing 99 n n S4 FE9 FS5 sing 100 n n S4 FE2 FS5 sing 101 n n FE9 S2 FS5 sing 102 n n FE9 S1 FS5 sing 103 n n FE2 S2 FS5 sing 104 n n FE2 S3 FS5 sing 105 n n S2 FE1 FS5 sing 106 n n S1 FE1 FS5 sing 107 n n S3 FE1 FS5 sing 108 n n S13 S12 FS5 sing 109 n n S12 S11 FS5 sing 110 n n S11 S10 FS5 sing 111 n n S10 S9 FS5 sing 112 n n # _atom_sites.entry_id 4JC0 _atom_sites.fract_transf_matrix[1][1] 0.016745 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011501 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005787 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FS5 A 1 501 501 FS5 FS5 . D 2 FS5 B 1 501 501 FS5 FS5 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S8 FS5 . . . D 2 0.621 -5.273 -63.357 1 60.21 ? S8 FS5 501 B 1 HETATM 2 FE FE6 FS5 . . . D 2 -0.519 -6.986 -62.749 1 84.17 ? FE6 FS5 501 B 1 HETATM 3 FE FE7 FS5 . . . D 2 1.49 -5.971 -61.47 1 93.05 ? FE7 FS5 501 B 1 HETATM 4 S S6 FS5 . . . D 2 -0.008 -7.356 -60.602 1 78.55 ? S6 FS5 501 B 1 HETATM 5 FE FE8 FS5 . . . D 2 1.914 -6.942 -63.933 1 89.54 ? FE8 FS5 501 B 1 HETATM 6 S S7 FS5 . . . D 2 3.141 -7.226 -62.125 1 82.49 ? S7 FS5 501 B 1 HETATM 7 FE FE5 FS5 . . . D 2 1.495 -8.574 -61.719 1 83.55 ? FE5 FS5 501 B 1 HETATM 8 S S5 FS5 . . . D 2 0.56 -8.627 -63.711 1 68.74 ? S5 FS5 501 B 1 HETATM 9 FE FE4 FS5 . . . D 2 7.856 -4.118 -69.477 1 64.63 ? FE4 FS5 501 B 1 HETATM 10 S S4 FS5 . . . D 2 5.641 -3.936 -69.469 1 60.81 ? S4 FS5 501 B 1 HETATM 11 FE FE9 FS5 . . . D 2 6.412 -2.694 -71.105 1 57.86 ? FE9 FS5 501 B 1 HETATM 12 FE FE2 FS5 . . . D 2 6.251 -5.199 -71.208 1 72.63 ? FE2 FS5 501 B 1 HETATM 13 S S2 FS5 . . . D 2 6.222 -3.893 -72.926 1 66.92 ? S2 FS5 501 B 1 HETATM 14 S S1 FS5 . . . D 2 8.593 -2.407 -70.674 1 66.04 ? S1 FS5 501 B 1 HETATM 15 S S3 FS5 . . . D 2 8.324 -5.811 -70.855 1 80.79 ? S3 FS5 501 B 1 HETATM 16 FE FE1 FS5 . . . D 2 8.244 -4.049 -72.165 1 73.87 ? FE1 FS5 501 B 1 HETATM 17 S S13 FS5 . . . D 2 8.438 -4.48 -67.44 0.85 68.17 ? S13 FS5 501 B 1 HETATM 18 S S12 FS5 . . . D 2 6.983 -3.662 -66.256 0.62 77.87 ? S12 FS5 501 B 1 HETATM 19 S S11 FS5 . . . D 2 5.859 -4.87 -65.026 0.56 70.15 ? S11 FS5 501 B 1 HETATM 20 S S10 FS5 . . . D 2 4.897 -6.527 -65.803 0.55 51.2 ? S10 FS5 501 B 1 HETATM 21 S S9 FS5 . . . D 2 2.84 -6.697 -65.901 0.83 59.58 ? S9 FS5 501 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 21 #