data_4JC7 # _model_server_result.job_id nrADEa6JxTqUtYtCqPSrJQ _model_server_result.datetime_utc '2024-12-11 22:28:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jc7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":211}' # _entry.id 4JC7 # _exptl.entry_id 4JC7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 392.491 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-HEXYLGLUTATHIONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4JC7 _cell.length_a 169.392 _cell.length_b 169.392 _cell.length_c 169.392 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JC7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 196 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id L _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 2 A HIS -4 1_555 C NI NI . A NI 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.674 ? metalc ? metalc2 A NE2 HIS 4 A HIS -2 1_555 C NI NI . A NI 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc3 A NE2 HIS 5 A HIS -1 1_555 B NI NI . A NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc4 A NE2 HIS 7 A HIS 1 1_555 B NI NI . A NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? # _chem_comp.formula 'C16 H30 N3 O6 S 1' _chem_comp.formula_weight 392.491 _chem_comp.id GTX _chem_comp.mon_nstd_flag . _chem_comp.name S-HEXYLGLUTATHIONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 CA1 GTX sing 129 n n N1 HN11 GTX sing 130 n n N1 HN12 GTX sing 131 n n N1 HN13 GTX sing 132 n n CA1 C1 GTX sing 133 n n CA1 CB1 GTX sing 134 n n CA1 HA1 GTX sing 135 n n C1 O11 GTX doub 136 n n C1 O12 GTX sing 137 n n O12 HO2 GTX sing 138 n n CB1 CG1 GTX sing 139 n n CB1 HB11 GTX sing 140 n n CB1 HB12 GTX sing 141 n n CG1 CD1 GTX sing 142 n n CG1 HG11 GTX sing 143 n n CG1 HG12 GTX sing 144 n n CD1 OE1 GTX doub 145 n n CD1 N2 GTX sing 146 n n N2 CA2 GTX sing 147 n n N2 HN2 GTX sing 148 n n CA2 C2 GTX sing 149 n n CA2 CB2 GTX sing 150 n n CA2 HA2 GTX sing 151 n n C2 O2 GTX doub 152 n n C2 N3 GTX sing 153 n n CB2 SG2 GTX sing 154 n n CB2 HB21 GTX sing 155 n n CB2 HB22 GTX sing 156 n n SG2 C1S GTX sing 157 n n C1S C2S GTX sing 158 n n C1S HS11 GTX sing 159 n n C1S HS12 GTX sing 160 n n C2S C3S GTX sing 161 n n C2S HS21 GTX sing 162 n n C2S HS22 GTX sing 163 n n C3S C4S GTX sing 164 n n C3S HS31 GTX sing 165 n n C3S HS32 GTX sing 166 n n C4S C5S GTX sing 167 n n C4S HS41 GTX sing 168 n n C4S HS42 GTX sing 169 n n C5S C6S GTX sing 170 n n C5S HS51 GTX sing 171 n n C5S HS52 GTX sing 172 n n C6S HS61 GTX sing 173 n n C6S HS62 GTX sing 174 n n C6S HS63 GTX sing 175 n n N3 CA3 GTX sing 176 n n N3 HN3 GTX sing 177 n n CA3 C3 GTX sing 178 n n CA3 HA31 GTX sing 179 n n CA3 HA32 GTX sing 180 n n C3 O31 GTX doub 181 n n C3 O32 GTX sing 182 n n O32 HO3 GTX sing 183 n n # _atom_sites.entry_id 4JC7 _atom_sites.fract_transf_matrix[1][1] 0.005903 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005903 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005903 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NI A 1 201 1151 NI NI . C 2 NI A 1 202 1152 NI NI . D 2 NI A 1 203 1153 NI NI . E 3 SO4 A 1 204 1164 SO4 SO4 . F 4 PAM A 1 205 1151 PAM PAM . G 5 PLM A 1 206 1152 PLM PLM . H 5 PLM A 1 207 1153 PLM PLM . I 5 PLM A 1 208 1154 PLM PLM . J 5 PLM A 1 209 1156 PLM PLM . K 5 PLM A 1 210 1157 PLM PLM . L 6 GTX A 1 211 1 GTX GTX . M 7 HOH A 1 301 1 HOH HOH . M 7 HOH A 2 302 2 HOH HOH . M 7 HOH A 3 303 4 HOH HOH . M 7 HOH A 4 304 5 HOH HOH . M 7 HOH A 5 305 6 HOH HOH . M 7 HOH A 6 306 7 HOH HOH . M 7 HOH A 7 307 8 HOH HOH . M 7 HOH A 8 308 9 HOH HOH . M 7 HOH A 9 309 10 HOH HOH . M 7 HOH A 10 310 12 HOH HOH . M 7 HOH A 11 311 13 HOH HOH . M 7 HOH A 12 312 14 HOH HOH . M 7 HOH A 13 313 15 HOH HOH . M 7 HOH A 14 314 17 HOH HOH . M 7 HOH A 15 315 18 HOH HOH . M 7 HOH A 16 316 20 HOH HOH . M 7 HOH A 17 317 22 HOH HOH . M 7 HOH A 18 318 23 HOH HOH . M 7 HOH A 19 319 24 HOH HOH . M 7 HOH A 20 320 25 HOH HOH . M 7 HOH A 21 321 26 HOH HOH . M 7 HOH A 22 322 28 HOH HOH . M 7 HOH A 23 323 29 HOH HOH . M 7 HOH A 24 324 30 HOH HOH . M 7 HOH A 25 325 33 HOH HOH . M 7 HOH A 26 326 34 HOH HOH . M 7 HOH A 27 327 35 HOH HOH . M 7 HOH A 28 328 36 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 GTX . . . L 6 24.237 27.292 34.857 1 31.59 ? N1 GTX 211 A 1 HETATM 2 C CA1 GTX . . . L 6 23.366 27.233 36.002 1 39.34 ? CA1 GTX 211 A 1 HETATM 3 C C1 GTX . . . L 6 23.801 28.209 37.073 1 43.85 ? C1 GTX 211 A 1 HETATM 4 O O11 GTX . . . L 6 23.032 28.428 38.062 1 34.31 ? O11 GTX 211 A 1 HETATM 5 O O12 GTX . . . L 6 24.923 28.811 36.998 1 30.83 ? O12 GTX 211 A 1 HETATM 6 C CB1 GTX . . . L 6 23.35 25.806 36.459 1 28.48 ? CB1 GTX 211 A 1 HETATM 7 C CG1 GTX . . . L 6 22.27 25.281 37.331 1 32.64 ? CG1 GTX 211 A 1 HETATM 8 C CD1 GTX . . . L 6 20.915 25.423 36.768 1 40.14 ? CD1 GTX 211 A 1 HETATM 9 O OE1 GTX . . . L 6 20.797 25.612 35.574 1 48.39 ? OE1 GTX 211 A 1 HETATM 10 N N2 GTX . . . L 6 19.741 25.361 37.568 1 40.93 ? N2 GTX 211 A 1 HETATM 11 C CA2 GTX . . . L 6 18.483 25.535 36.907 1 47.92 ? CA2 GTX 211 A 1 HETATM 12 C C2 GTX . . . L 6 18.349 26.992 36.581 1 49.8 ? C2 GTX 211 A 1 HETATM 13 O O2 GTX . . . L 6 17.248 27.457 36.278 1 39.97 ? O2 GTX 211 A 1 HETATM 14 C CB2 GTX . . . L 6 17.289 25.116 37.72 1 55.97 ? CB2 GTX 211 A 1 HETATM 15 S SG2 GTX . . . L 6 17.311 23.648 38.713 1 70.71 ? SG2 GTX 211 A 1 HETATM 16 C C1S GTX . . . L 6 16.883 22.238 37.744 1 53.25 ? C1S GTX 211 A 1 HETATM 17 C C2S GTX . . . L 6 15.711 22.329 36.831 1 54.6 ? C2S GTX 211 A 1 HETATM 18 C C3S GTX . . . L 6 15.524 21.129 35.97 1 53.4 ? C3S GTX 211 A 1 HETATM 19 C C4S GTX . . . L 6 14.258 21.015 35.197 1 49.22 ? C4S GTX 211 A 1 HETATM 20 C C5S GTX . . . L 6 13.302 19.941 35.577 1 41.58 ? C5S GTX 211 A 1 HETATM 21 C C6S GTX . . . L 6 11.922 20.162 35.061 1 41.33 ? C6S GTX 211 A 1 HETATM 22 N N3 GTX . . . L 6 19.523 27.829 36.629 1 45.89 ? N3 GTX 211 A 1 HETATM 23 C CA3 GTX . . . L 6 19.439 29.224 36.319 1 42.56 ? CA3 GTX 211 A 1 HETATM 24 C C3 GTX . . . L 6 18.703 30.055 37.307 1 36.01 ? C3 GTX 211 A 1 HETATM 25 O O31 GTX . . . L 6 18.001 31.031 36.91 1 31.42 ? O31 GTX 211 A 1 HETATM 26 O O32 GTX . . . L 6 18.792 29.731 38.524 1 28.38 ? O32 GTX 211 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 26 #