data_4JCG # _model_server_result.job_id IZmXjVFinWxekyI1YLlErw _model_server_result.datetime_utc '2025-03-05 21:27:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jcg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":101}' # _entry.id 4JCG # _exptl.entry_id 4JCG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4JCG _cell.length_a 60.358 _cell.length_b 60.358 _cell.length_c 109.133 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JCG _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 10 A CYS 10 1_555 B CAB HEC . A HEC 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.776 ? covale ? covale2 A SG CYS 13 A CYS 13 1_555 B CAC HEC . A HEC 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.884 ? metalc ? metalc1 A NE2 HIS 14 A HIS 14 1_555 B FE HEC . A HEC 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc2 A SD MET 59 A MET 59 1_555 B FE HEC . A HEC 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 103 n n FE NB HEC sing 104 n n FE NC HEC sing 105 n n FE ND HEC sing 106 n n CHA C1A HEC doub 107 n n CHA C4D HEC sing 108 n n CHA HHA HEC sing 109 n n CHB C4A HEC doub 110 n n CHB C1B HEC sing 111 n n CHB HHB HEC sing 112 n n CHC C4B HEC doub 113 n n CHC C1C HEC sing 114 n n CHC HHC HEC sing 115 n n CHD C4C HEC doub 116 n n CHD C1D HEC sing 117 n n CHD HHD HEC sing 118 n n NA C1A HEC sing 119 n y NA C4A HEC sing 120 n y C1A C2A HEC sing 121 n y C2A C3A HEC doub 122 n y C2A CAA HEC sing 123 n n C3A C4A HEC sing 124 n y C3A CMA HEC sing 125 n n CMA HMA1 HEC sing 126 n n CMA HMA2 HEC sing 127 n n CMA HMA3 HEC sing 128 n n CAA CBA HEC sing 129 n n CAA HAA1 HEC sing 130 n n CAA HAA2 HEC sing 131 n n CBA CGA HEC sing 132 n n CBA HBA1 HEC sing 133 n n CBA HBA2 HEC sing 134 n n CGA O1A HEC doub 135 n n CGA O2A HEC sing 136 n n O2A H2A HEC sing 137 n n NB C1B HEC sing 138 n y NB C4B HEC sing 139 n y C1B C2B HEC doub 140 n y C2B C3B HEC sing 141 n y C2B CMB HEC sing 142 n n C3B C4B HEC sing 143 n y C3B CAB HEC doub 144 e n CMB HMB1 HEC sing 145 n n CMB HMB2 HEC sing 146 n n CMB HMB3 HEC sing 147 n n CAB CBB HEC sing 148 n n CAB HAB HEC sing 149 n n CBB HBB1 HEC sing 150 n n CBB HBB2 HEC sing 151 n n CBB HBB3 HEC sing 152 n n NC C1C HEC sing 153 n y NC C4C HEC sing 154 n y C1C C2C HEC doub 155 n y C2C C3C HEC sing 156 n y C2C CMC HEC sing 157 n n C3C C4C HEC sing 158 n y C3C CAC HEC doub 159 e n CMC HMC1 HEC sing 160 n n CMC HMC2 HEC sing 161 n n CMC HMC3 HEC sing 162 n n CAC CBC HEC sing 163 n n CAC HAC HEC sing 164 n n CBC HBC1 HEC sing 165 n n CBC HBC2 HEC sing 166 n n CBC HBC3 HEC sing 167 n n ND C1D HEC sing 168 n y ND C4D HEC sing 169 n y C1D C2D HEC doub 170 n y C2D C3D HEC sing 171 n y C2D CMD HEC sing 172 n n C3D C4D HEC doub 173 n y C3D CAD HEC sing 174 n n CMD HMD1 HEC sing 175 n n CMD HMD2 HEC sing 176 n n CMD HMD3 HEC sing 177 n n CAD CBD HEC sing 178 n n CAD HAD1 HEC sing 179 n n CAD HAD2 HEC sing 180 n n CBD CGD HEC sing 181 n n CBD HBD1 HEC sing 182 n n CBD HBD2 HEC sing 183 n n CGD O1D HEC doub 184 n n CGD O2D HEC sing 185 n n O2D H2D HEC sing 186 n n # _atom_sites.entry_id 4JCG _atom_sites.fract_transf_matrix[1][1] 0.016568 _atom_sites.fract_transf_matrix[1][2] 0.009565 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019131 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009163 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEC A 1 101 1 HEC HEC . C 3 HOH A 1 201 1 HOH HOH . C 3 HOH A 2 202 2 HOH HOH . C 3 HOH A 3 203 3 HOH HOH . C 3 HOH A 4 204 4 HOH HOH . C 3 HOH A 5 205 5 HOH HOH . C 3 HOH A 6 206 6 HOH HOH . C 3 HOH A 7 207 7 HOH HOH . C 3 HOH A 8 208 8 HOH HOH . C 3 HOH A 9 209 9 HOH HOH . C 3 HOH A 10 210 10 HOH HOH . C 3 HOH A 11 211 11 HOH HOH . C 3 HOH A 12 212 12 HOH HOH . C 3 HOH A 13 213 13 HOH HOH . C 3 HOH A 14 214 14 HOH HOH . C 3 HOH A 15 215 15 HOH HOH . C 3 HOH A 16 216 16 HOH HOH . C 3 HOH A 17 217 17 HOH HOH . C 3 HOH A 18 218 18 HOH HOH . C 3 HOH A 19 219 19 HOH HOH . C 3 HOH A 20 220 20 HOH HOH . C 3 HOH A 21 221 21 HOH HOH . C 3 HOH A 22 222 22 HOH HOH . C 3 HOH A 23 223 23 HOH HOH . C 3 HOH A 24 224 24 HOH HOH . C 3 HOH A 25 225 25 HOH HOH . C 3 HOH A 26 226 26 HOH HOH . C 3 HOH A 27 227 27 HOH HOH . C 3 HOH A 28 228 28 HOH HOH . C 3 HOH A 29 229 29 HOH HOH . C 3 HOH A 30 230 30 HOH HOH . C 3 HOH A 31 231 31 HOH HOH . C 3 HOH A 32 232 32 HOH HOH . C 3 HOH A 33 233 33 HOH HOH . C 3 HOH A 34 234 34 HOH HOH . C 3 HOH A 35 235 35 HOH HOH . C 3 HOH A 36 236 36 HOH HOH . C 3 HOH A 37 237 37 HOH HOH . C 3 HOH A 38 238 38 HOH HOH . C 3 HOH A 39 239 39 HOH HOH . C 3 HOH A 40 240 40 HOH HOH . C 3 HOH A 41 241 41 HOH HOH . C 3 HOH A 42 242 42 HOH HOH . C 3 HOH A 43 243 43 HOH HOH . C 3 HOH A 44 244 44 HOH HOH . C 3 HOH A 45 245 45 HOH HOH . C 3 HOH A 46 246 46 HOH HOH . C 3 HOH A 47 247 47 HOH HOH . C 3 HOH A 48 248 48 HOH HOH . C 3 HOH A 49 249 49 HOH HOH . C 3 HOH A 50 250 50 HOH HOH . C 3 HOH A 51 251 51 HOH HOH . C 3 HOH A 52 252 52 HOH HOH . C 3 HOH A 53 253 53 HOH HOH . C 3 HOH A 54 254 55 HOH HOH . C 3 HOH A 55 255 56 HOH HOH . C 3 HOH A 56 256 57 HOH HOH . C 3 HOH A 57 257 58 HOH HOH . C 3 HOH A 58 258 59 HOH HOH . C 3 HOH A 59 259 60 HOH HOH . C 3 HOH A 60 260 61 HOH HOH . C 3 HOH A 61 261 63 HOH HOH . C 3 HOH A 62 262 64 HOH HOH . C 3 HOH A 63 263 65 HOH HOH . C 3 HOH A 64 264 66 HOH HOH . C 3 HOH A 65 265 67 HOH HOH . C 3 HOH A 66 266 68 HOH HOH . C 3 HOH A 67 267 69 HOH HOH . C 3 HOH A 68 268 70 HOH HOH . C 3 HOH A 69 269 72 HOH HOH . C 3 HOH A 70 270 73 HOH HOH . C 3 HOH A 71 271 74 HOH HOH . C 3 HOH A 72 272 75 HOH HOH . C 3 HOH A 73 273 76 HOH HOH . C 3 HOH A 74 274 77 HOH HOH . C 3 HOH A 75 275 78 HOH HOH . C 3 HOH A 76 276 79 HOH HOH . C 3 HOH A 77 277 80 HOH HOH . C 3 HOH A 78 278 81 HOH HOH . C 3 HOH A 79 279 82 HOH HOH . C 3 HOH A 80 280 83 HOH HOH . C 3 HOH A 81 281 84 HOH HOH . C 3 HOH A 82 282 85 HOH HOH . C 3 HOH A 83 283 86 HOH HOH . C 3 HOH A 84 284 87 HOH HOH . C 3 HOH A 85 285 90 HOH HOH . C 3 HOH A 86 286 91 HOH HOH . C 3 HOH A 87 287 92 HOH HOH . C 3 HOH A 88 288 93 HOH HOH . C 3 HOH A 89 289 95 HOH HOH . C 3 HOH A 90 290 96 HOH HOH . C 3 HOH A 91 291 97 HOH HOH . C 3 HOH A 92 292 98 HOH HOH . C 3 HOH A 93 293 99 HOH HOH . C 3 HOH A 94 294 100 HOH HOH . C 3 HOH A 95 295 101 HOH HOH . C 3 HOH A 96 296 102 HOH HOH . C 3 HOH A 97 297 103 HOH HOH . C 3 HOH A 98 298 104 HOH HOH . C 3 HOH A 99 299 105 HOH HOH . C 3 HOH A 100 300 106 HOH HOH . C 3 HOH A 101 301 107 HOH HOH . C 3 HOH A 102 302 108 HOH HOH . C 3 HOH A 103 303 109 HOH HOH . C 3 HOH A 104 304 110 HOH HOH . C 3 HOH A 105 305 111 HOH HOH . C 3 HOH A 106 306 112 HOH HOH . C 3 HOH A 107 307 113 HOH HOH . C 3 HOH A 108 308 114 HOH HOH . C 3 HOH A 109 309 115 HOH HOH . C 3 HOH A 110 310 116 HOH HOH . C 3 HOH A 111 311 118 HOH HOH . C 3 HOH A 112 312 119 HOH HOH . C 3 HOH A 113 313 122 HOH HOH . C 3 HOH A 114 314 123 HOH HOH . C 3 HOH A 115 315 124 HOH HOH . C 3 HOH A 116 316 125 HOH HOH . C 3 HOH A 117 317 126 HOH HOH . C 3 HOH A 118 318 127 HOH HOH . C 3 HOH A 119 319 129 HOH HOH . C 3 HOH A 120 320 130 HOH HOH . C 3 HOH A 121 321 132 HOH HOH . C 3 HOH A 122 322 133 HOH HOH . C 3 HOH A 123 323 134 HOH HOH . C 3 HOH A 124 324 135 HOH HOH . C 3 HOH A 125 325 136 HOH HOH . C 3 HOH A 126 326 137 HOH HOH . C 3 HOH A 127 327 138 HOH HOH . C 3 HOH A 128 328 140 HOH HOH . C 3 HOH A 129 329 141 HOH HOH . C 3 HOH A 130 330 142 HOH HOH . C 3 HOH A 131 331 143 HOH HOH . C 3 HOH A 132 332 144 HOH HOH . C 3 HOH A 133 333 145 HOH HOH . C 3 HOH A 134 334 146 HOH HOH . C 3 HOH A 135 335 147 HOH HOH . C 3 HOH A 136 336 148 HOH HOH . C 3 HOH A 137 337 149 HOH HOH . C 3 HOH A 138 338 150 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . B 2 -8.639 -18.645 -7.044 1 25.75 ? FE HEC 101 A 1 HETATM 2 C CHA HEC . . . B 2 -5.418 -19.751 -7.123 1 21.42 ? CHA HEC 101 A 1 HETATM 3 C CHB HEC . . . B 2 -9.315 -20.659 -4.356 1 18.29 ? CHB HEC 101 A 1 HETATM 4 C CHC HEC . . . B 2 -11.799 -17.27 -6.754 1 27.8 ? CHC HEC 101 A 1 HETATM 5 C CHD HEC . . . B 2 -8.335 -17.178 -10.077 1 30.45 ? CHD HEC 101 A 1 HETATM 6 N NA HEC . . . B 2 -7.607 -19.957 -5.981 1 22.79 ? NA HEC 101 A 1 HETATM 7 C C1A HEC . . . B 2 -6.262 -20.235 -6.155 1 22.14 ? C1A HEC 101 A 1 HETATM 8 C C2A HEC . . . B 2 -5.878 -21.169 -5.121 1 20.67 ? C2A HEC 101 A 1 HETATM 9 C C3A HEC . . . B 2 -6.944 -21.419 -4.371 1 20.85 ? C3A HEC 101 A 1 HETATM 10 C C4A HEC . . . B 2 -8.025 -20.662 -4.889 1 21.01 ? C4A HEC 101 A 1 HETATM 11 C CMA HEC . . . B 2 -7.026 -22.358 -3.146 1 19.52 ? CMA HEC 101 A 1 HETATM 12 C CAA HEC . . . B 2 -4.461 -21.775 -5.01 1 18.81 ? CAA HEC 101 A 1 HETATM 13 C CBA HEC . . . B 2 -3.476 -20.915 -4.227 1 22.58 ? CBA HEC 101 A 1 HETATM 14 C CGA HEC . . . B 2 -2.201 -21.695 -3.998 1 19.97 ? CGA HEC 101 A 1 HETATM 15 O O1A HEC . . . B 2 -1.905 -22.793 -4.552 1 19.2 ? O1A HEC 101 A 1 HETATM 16 O O2A HEC . . . B 2 -1.344 -21.155 -3.263 1 19.73 ? O2A HEC 101 A 1 HETATM 17 N NB HEC . . . B 2 -10.2 -18.876 -5.819 1 22.37 ? NB HEC 101 A 1 HETATM 18 C C1B HEC . . . B 2 -10.3 -19.772 -4.769 1 21.78 ? C1B HEC 101 A 1 HETATM 19 C C2B HEC . . . B 2 -11.536 -19.573 -4.119 1 23.19 ? C2B HEC 101 A 1 HETATM 20 C C3B HEC . . . B 2 -12.252 -18.668 -4.777 1 22.97 ? C3B HEC 101 A 1 HETATM 21 C C4B HEC . . . B 2 -11.417 -18.187 -5.82 1 26.92 ? C4B HEC 101 A 1 HETATM 22 C CMB HEC . . . B 2 -12.029 -20.459 -2.98 1 23.71 ? CMB HEC 101 A 1 HETATM 23 C CAB HEC . . . B 2 -13.66 -18.121 -4.388 1 21.57 ? CAB HEC 101 A 1 HETATM 24 C CBB HEC . . . B 2 -13.561 -17.384 -3.008 1 23.08 ? CBB HEC 101 A 1 HETATM 25 N NC HEC . . . B 2 -9.841 -17.558 -8.199 1 33.04 ? NC HEC 101 A 1 HETATM 26 C C1C HEC . . . B 2 -11.073 -17.005 -7.881 1 29.87 ? C1C HEC 101 A 1 HETATM 27 C C2C HEC . . . B 2 -11.415 -15.974 -8.822 1 31.99 ? C2C HEC 101 A 1 HETATM 28 C C3C HEC . . . B 2 -10.498 -15.985 -9.783 1 32.75 ? C3C HEC 101 A 1 HETATM 29 C C4C HEC . . . B 2 -9.478 -16.93 -9.379 1 26.97 ? C4C HEC 101 A 1 HETATM 30 C CMC HEC . . . B 2 -12.781 -15.257 -8.764 1 33.97 ? CMC HEC 101 A 1 HETATM 31 C CAC HEC . . . B 2 -10.466 -15.189 -11.112 1 40.81 ? CAC HEC 101 A 1 HETATM 32 C CBC HEC . . . B 2 -10.688 -13.698 -11.001 1 34.46 ? CBC HEC 101 A 1 HETATM 33 N ND HEC . . . B 2 -7.157 -18.517 -8.304 1 23.28 ? ND HEC 101 A 1 HETATM 34 C C1D HEC . . . B 2 -7.239 -17.798 -9.511 1 29.39 ? C1D HEC 101 A 1 HETATM 35 C C2D HEC . . . B 2 -5.954 -17.818 -10.147 1 31.63 ? C2D HEC 101 A 1 HETATM 36 C C3D HEC . . . B 2 -5.049 -18.608 -9.256 1 27.6 ? C3D HEC 101 A 1 HETATM 37 C C4D HEC . . . B 2 -5.861 -18.987 -8.149 1 25.95 ? C4D HEC 101 A 1 HETATM 38 C CMD HEC . . . B 2 -5.585 -17.158 -11.477 1 31.73 ? CMD HEC 101 A 1 HETATM 39 C CAD HEC . . . B 2 -3.563 -18.93 -9.44 1 26.96 ? CAD HEC 101 A 1 HETATM 40 C CBD HEC . . . B 2 -2.772 -17.953 -8.592 1 28.93 ? CBD HEC 101 A 1 HETATM 41 C CGD HEC . . . B 2 -1.315 -18.284 -8.639 1 26.28 ? CGD HEC 101 A 1 HETATM 42 O O1D HEC . . . B 2 -0.655 -18.254 -7.572 1 23.5 ? O1D HEC 101 A 1 HETATM 43 O O2D HEC . . . B 2 -0.76 -18.606 -9.731 1 23.71 ? O2D HEC 101 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #