data_4JCZ # _model_server_result.job_id qnErGHli3GiQhFBG0pqcqg _model_server_result.datetime_utc '2024-11-19 16:34:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jcz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":209}' # _entry.id 4JCZ # _exptl.entry_id 4JCZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 392.491 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-HEXYLGLUTATHIONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4JCZ _cell.length_a 170.281 _cell.length_b 170.281 _cell.length_c 170.281 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JCZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 196 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 24_544 -y,-z-1/2,x-1/2 0 -1 0 0 0 -1 1 0 0 0 -85.1405 -85.1405 3 'crystal symmetry operation' 30_554 z+1/2,-x,-y-1/2 0 0 1 -1 0 0 0 -1 0 85.1405 0 -85.1405 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NE2 _struct_conn.ptnr1_label_comp_id HIS _struct_conn.ptnr1_label_seq_id 7 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id HIS _struct_conn.ptnr1_auth_seq_id 1 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id NI _struct_conn.ptnr2_label_comp_id NI _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id NI _struct_conn.ptnr2_auth_seq_id 201 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.383 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C16 H30 N3 O6 S 1' _chem_comp.formula_weight 392.491 _chem_comp.id GTX _chem_comp.mon_nstd_flag . _chem_comp.name S-HEXYLGLUTATHIONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 CA1 GTX sing 129 n n N1 HN11 GTX sing 130 n n N1 HN12 GTX sing 131 n n N1 HN13 GTX sing 132 n n CA1 C1 GTX sing 133 n n CA1 CB1 GTX sing 134 n n CA1 HA1 GTX sing 135 n n C1 O11 GTX doub 136 n n C1 O12 GTX sing 137 n n O12 HO2 GTX sing 138 n n CB1 CG1 GTX sing 139 n n CB1 HB11 GTX sing 140 n n CB1 HB12 GTX sing 141 n n CG1 CD1 GTX sing 142 n n CG1 HG11 GTX sing 143 n n CG1 HG12 GTX sing 144 n n CD1 OE1 GTX doub 145 n n CD1 N2 GTX sing 146 n n N2 CA2 GTX sing 147 n n N2 HN2 GTX sing 148 n n CA2 C2 GTX sing 149 n n CA2 CB2 GTX sing 150 n n CA2 HA2 GTX sing 151 n n C2 O2 GTX doub 152 n n C2 N3 GTX sing 153 n n CB2 SG2 GTX sing 154 n n CB2 HB21 GTX sing 155 n n CB2 HB22 GTX sing 156 n n SG2 C1S GTX sing 157 n n C1S C2S GTX sing 158 n n C1S HS11 GTX sing 159 n n C1S HS12 GTX sing 160 n n C2S C3S GTX sing 161 n n C2S HS21 GTX sing 162 n n C2S HS22 GTX sing 163 n n C3S C4S GTX sing 164 n n C3S HS31 GTX sing 165 n n C3S HS32 GTX sing 166 n n C4S C5S GTX sing 167 n n C4S HS41 GTX sing 168 n n C4S HS42 GTX sing 169 n n C5S C6S GTX sing 170 n n C5S HS51 GTX sing 171 n n C5S HS52 GTX sing 172 n n C6S HS61 GTX sing 173 n n C6S HS62 GTX sing 174 n n C6S HS63 GTX sing 175 n n N3 CA3 GTX sing 176 n n N3 HN3 GTX sing 177 n n CA3 C3 GTX sing 178 n n CA3 HA31 GTX sing 179 n n CA3 HA32 GTX sing 180 n n C3 O31 GTX doub 181 n n C3 O32 GTX sing 182 n n O32 HO3 GTX sing 183 n n # _atom_sites.entry_id 4JCZ _atom_sites.fract_transf_matrix[1][1] 0.005873 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005873 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005873 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NI A 1 201 1151 NI NI . C 3 SO4 A 1 202 1164 SO4 SO4 . D 4 PAM A 1 203 1151 PAM PAM . E 5 PLM A 1 204 1152 PLM PLM . F 5 PLM A 1 205 1153 PLM PLM . G 5 PLM A 1 206 1154 PLM PLM . H 5 PLM A 1 207 1156 PLM PLM . I 5 PLM A 1 208 1157 PLM PLM . J 6 GTX A 1 209 1 GTX GTX . K 7 HOH A 1 301 1 HOH HOH . K 7 HOH A 2 302 2 HOH HOH . K 7 HOH A 3 303 3 HOH HOH . K 7 HOH A 4 304 4 HOH HOH . K 7 HOH A 5 305 5 HOH HOH . K 7 HOH A 6 306 6 HOH HOH . K 7 HOH A 7 307 7 HOH HOH . K 7 HOH A 8 308 8 HOH HOH . K 7 HOH A 9 309 9 HOH HOH . K 7 HOH A 10 310 10 HOH HOH . K 7 HOH A 11 311 11 HOH HOH . K 7 HOH A 12 312 12 HOH HOH . K 7 HOH A 13 313 13 HOH HOH . K 7 HOH A 14 314 14 HOH HOH . K 7 HOH A 15 315 15 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 GTX . . . J 6 14.899 -7.765 -67.256 1 66.05 ? N1 GTX 209 A 1 HETATM 2 C CA1 GTX . . . J 6 15.099 -6.709 -66.302 1 67.13 ? CA1 GTX 209 A 1 HETATM 3 C C1 GTX . . . J 6 14.244 -5.514 -66.605 1 62.82 ? C1 GTX 209 A 1 HETATM 4 O O11 GTX . . . J 6 14.073 -4.611 -65.735 1 54.71 ? O11 GTX 209 A 1 HETATM 5 O O12 GTX . . . J 6 13.709 -5.404 -67.738 1 58.12 ? O12 GTX 209 A 1 HETATM 6 C CB1 GTX . . . J 6 16.535 -6.348 -66.371 1 48.36 ? CB1 GTX 209 A 1 HETATM 7 C CG1 GTX . . . J 6 17.172 -5.482 -65.349 1 49.43 ? CG1 GTX 209 A 1 HETATM 8 C CD1 GTX . . . J 6 16.984 -5.956 -63.977 1 61.56 ? CD1 GTX 209 A 1 HETATM 9 O OE1 GTX . . . J 6 16.69 -7.117 -63.746 1 87.68 ? OE1 GTX 209 A 1 HETATM 10 N N2 GTX . . . J 6 17.12 -5.066 -62.896 1 70.61 ? N2 GTX 209 A 1 HETATM 11 C CA2 GTX . . . J 6 16.925 -5.602 -61.585 1 72.6 ? CA2 GTX 209 A 1 HETATM 12 C C2 GTX . . . J 6 15.434 -5.631 -61.407 1 81.86 ? C2 GTX 209 A 1 HETATM 13 O O2 GTX . . . J 6 14.904 -6.002 -60.352 1 71.72 ? O2 GTX 209 A 1 HETATM 14 C CB2 GTX . . . J 6 17.813 -4.781 -60.687 1 71.97 ? CB2 GTX 209 A 1 HETATM 15 S SG2 GTX . . . J 6 17.737 -4.653 -58.925 1 112.69 ? SG2 GTX 209 A 1 HETATM 16 C C1S GTX . . . J 6 19.372 -4.83 -58.302 1 81.86 ? C1S GTX 209 A 1 HETATM 17 C C2S GTX . . . J 6 19.725 -6.209 -57.875 1 75.62 ? C2S GTX 209 A 1 HETATM 18 C C3S GTX . . . J 6 21.155 -6.484 -57.617 1 55.19 ? C3S GTX 209 A 1 HETATM 19 C C4S GTX . . . J 6 21.531 -7.918 -57.59 1 75.68 ? C4S GTX 209 A 1 HETATM 20 C C5S GTX . . . J 6 22.553 -8.357 -56.602 1 71.68 ? C5S GTX 209 A 1 HETATM 21 C C6S GTX . . . J 6 23.473 -9.452 -57.051 1 65.78 ? C6S GTX 209 A 1 HETATM 22 N N3 GTX . . . J 6 14.692 -5.229 -62.585 1 71.89 ? N3 GTX 209 A 1 HETATM 23 C CA3 GTX . . . J 6 13.267 -5.169 -62.727 1 71.58 ? CA3 GTX 209 A 1 HETATM 24 C C3 GTX . . . J 6 12.504 -4.61 -61.597 1 65.24 ? C3 GTX 209 A 1 HETATM 25 O O31 GTX . . . J 6 11.668 -5.348 -60.994 1 51.88 ? O31 GTX 209 A 1 HETATM 26 O O32 GTX . . . J 6 12.739 -3.41 -61.272 1 65.09 ? O32 GTX 209 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 604 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 26 #