data_4JD1 # _model_server_result.job_id 64vQjPwg9OHKkzpCoPAHQw _model_server_result.datetime_utc '2024-11-04 22:50:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jd1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 4JD1 # _exptl.entry_id 4JD1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 138.059 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description FOSFOMYCIN _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4JD1 _cell.length_a 48.157 _cell.length_b 48.157 _cell.length_c 147.588 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JD1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 8 A HIS 7 1_555 F ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc2 A NE2 HIS 67 A HIS 66 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc3 A OE1 GLU 116 A GLU 115 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc4 C ZN ZN . A ZN 201 1_555 D O3P FCN . A FCN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.867 ? metalc ? metalc5 C ZN ZN . A ZN 201 1_555 D O FCN . A FCN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? metalc ? metalc6 C ZN ZN . A ZN 201 1_555 B NE2 HIS 8 B HIS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc7 B NE2 HIS 67 B HIS 66 1_555 F ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc8 B OE1 GLU 116 B GLU 115 1_555 F ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? metalc ? metalc9 F ZN ZN . B ZN 202 1_555 G O3P FCN . B FCN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? # _chem_comp.formula 'C3 H7 O4 P' _chem_comp.formula_weight 138.059 _chem_comp.id FCN _chem_comp.mon_nstd_flag . _chem_comp.name FOSFOMYCIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '1,2-EPOXYPROPYLPHOSPHONIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 FCN sing 83 n n C1 O FCN sing 84 n n C1 P FCN sing 85 n n C1 H1 FCN sing 86 n n C2 C3 FCN sing 87 n n C2 O FCN sing 88 n n C2 H2 FCN sing 89 n n C3 H31 FCN sing 90 n n C3 H32 FCN sing 91 n n C3 H33 FCN sing 92 n n P O1P FCN doub 93 n n P O2P FCN sing 94 n n P O3P FCN sing 95 n n O2P HOP2 FCN sing 96 n n O3P HOP3 FCN sing 97 n n # _atom_sites.entry_id 4JD1 _atom_sites.fract_transf_matrix[1][1] 0.020765 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020765 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006776 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 201 150 ZN ZN . D 3 FCN A 1 202 151 FCN FCN . E 4 PGE B 1 201 152 PGE PGE . F 2 ZN B 1 202 150 ZN ZN . G 3 FCN B 1 203 151 FCN FCN . H 5 HOH A 1 301 1 HOH HOH . H 5 HOH A 2 302 5 HOH HOH . H 5 HOH A 3 303 6 HOH HOH . H 5 HOH A 4 304 7 HOH HOH . H 5 HOH A 5 305 8 HOH HOH . H 5 HOH A 6 306 9 HOH HOH . H 5 HOH A 7 307 10 HOH HOH . H 5 HOH A 8 308 11 HOH HOH . H 5 HOH A 9 309 12 HOH HOH . H 5 HOH A 10 310 13 HOH HOH . H 5 HOH A 11 311 14 HOH HOH . H 5 HOH A 12 312 15 HOH HOH . H 5 HOH A 13 313 16 HOH HOH . H 5 HOH A 14 314 21 HOH HOH . H 5 HOH A 15 315 27 HOH HOH . H 5 HOH A 16 316 29 HOH HOH . H 5 HOH A 17 317 33 HOH HOH . H 5 HOH A 18 318 34 HOH HOH . H 5 HOH A 19 319 35 HOH HOH . H 5 HOH A 20 320 37 HOH HOH . H 5 HOH A 21 321 42 HOH HOH . H 5 HOH A 22 322 44 HOH HOH . H 5 HOH A 23 323 48 HOH HOH . H 5 HOH A 24 324 51 HOH HOH . H 5 HOH A 25 325 52 HOH HOH . H 5 HOH A 26 326 53 HOH HOH . H 5 HOH A 27 327 54 HOH HOH . H 5 HOH A 28 328 57 HOH HOH . H 5 HOH A 29 329 58 HOH HOH . H 5 HOH A 30 330 60 HOH HOH . H 5 HOH A 31 331 62 HOH HOH . H 5 HOH A 32 332 63 HOH HOH . H 5 HOH A 33 333 65 HOH HOH . H 5 HOH A 34 334 66 HOH HOH . H 5 HOH A 35 335 68 HOH HOH . H 5 HOH A 36 336 72 HOH HOH . H 5 HOH A 37 337 73 HOH HOH . H 5 HOH A 38 338 78 HOH HOH . H 5 HOH A 39 339 79 HOH HOH . H 5 HOH A 40 340 81 HOH HOH . H 5 HOH A 41 341 83 HOH HOH . H 5 HOH A 42 342 84 HOH HOH . H 5 HOH A 43 343 85 HOH HOH . H 5 HOH A 44 344 86 HOH HOH . H 5 HOH A 45 345 91 HOH HOH . H 5 HOH A 46 346 92 HOH HOH . H 5 HOH A 47 347 94 HOH HOH . H 5 HOH A 48 348 96 HOH HOH . H 5 HOH A 49 349 97 HOH HOH . H 5 HOH A 50 350 98 HOH HOH . H 5 HOH A 51 351 99 HOH HOH . H 5 HOH A 52 352 100 HOH HOH . H 5 HOH A 53 353 103 HOH HOH . H 5 HOH A 54 354 105 HOH HOH . H 5 HOH A 55 355 106 HOH HOH . H 5 HOH A 56 356 109 HOH HOH . H 5 HOH A 57 357 111 HOH HOH . H 5 HOH A 58 358 112 HOH HOH . H 5 HOH A 59 359 115 HOH HOH . H 5 HOH A 60 360 119 HOH HOH . H 5 HOH A 61 361 121 HOH HOH . H 5 HOH A 62 362 124 HOH HOH . H 5 HOH A 63 363 127 HOH HOH . H 5 HOH A 64 364 129 HOH HOH . H 5 HOH A 65 365 130 HOH HOH . H 5 HOH A 66 366 132 HOH HOH . H 5 HOH A 67 367 135 HOH HOH . H 5 HOH A 68 368 136 HOH HOH . H 5 HOH A 69 369 138 HOH HOH . H 5 HOH A 70 370 139 HOH HOH . H 5 HOH A 71 371 140 HOH HOH . H 5 HOH A 72 372 143 HOH HOH . H 5 HOH A 73 373 144 HOH HOH . H 5 HOH A 74 374 145 HOH HOH . H 5 HOH A 75 375 146 HOH HOH . H 5 HOH A 76 376 150 HOH HOH . H 5 HOH A 77 377 152 HOH HOH . H 5 HOH A 78 378 153 HOH HOH . H 5 HOH A 79 379 154 HOH HOH . H 5 HOH A 80 380 155 HOH HOH . H 5 HOH A 81 381 157 HOH HOH . H 5 HOH A 82 382 158 HOH HOH . H 5 HOH A 83 383 160 HOH HOH . H 5 HOH A 84 384 162 HOH HOH . H 5 HOH A 85 385 164 HOH HOH . H 5 HOH A 86 386 165 HOH HOH . H 5 HOH A 87 387 168 HOH HOH . H 5 HOH A 88 388 170 HOH HOH . H 5 HOH A 89 389 171 HOH HOH . H 5 HOH A 90 390 173 HOH HOH . H 5 HOH A 91 391 174 HOH HOH . H 5 HOH A 92 392 175 HOH HOH . H 5 HOH A 93 393 176 HOH HOH . H 5 HOH A 94 394 177 HOH HOH . H 5 HOH A 95 395 184 HOH HOH . H 5 HOH A 96 396 2 HOH HOH . I 5 HOH B 1 301 3 HOH HOH . I 5 HOH B 2 302 4 HOH HOH . I 5 HOH B 3 303 17 HOH HOH . I 5 HOH B 4 304 18 HOH HOH . I 5 HOH B 5 305 19 HOH HOH . I 5 HOH B 6 306 20 HOH HOH . I 5 HOH B 7 307 22 HOH HOH . I 5 HOH B 8 308 23 HOH HOH . I 5 HOH B 9 309 24 HOH HOH . I 5 HOH B 10 310 25 HOH HOH . I 5 HOH B 11 311 26 HOH HOH . I 5 HOH B 12 312 28 HOH HOH . I 5 HOH B 13 313 30 HOH HOH . I 5 HOH B 14 314 31 HOH HOH . I 5 HOH B 15 315 32 HOH HOH . I 5 HOH B 16 316 36 HOH HOH . I 5 HOH B 17 317 38 HOH HOH . I 5 HOH B 18 318 39 HOH HOH . I 5 HOH B 19 319 40 HOH HOH . I 5 HOH B 20 320 41 HOH HOH . I 5 HOH B 21 321 43 HOH HOH . I 5 HOH B 22 322 45 HOH HOH . I 5 HOH B 23 323 46 HOH HOH . I 5 HOH B 24 324 47 HOH HOH . I 5 HOH B 25 325 49 HOH HOH . I 5 HOH B 26 326 50 HOH HOH . I 5 HOH B 27 327 55 HOH HOH . I 5 HOH B 28 328 56 HOH HOH . I 5 HOH B 29 329 59 HOH HOH . I 5 HOH B 30 330 61 HOH HOH . I 5 HOH B 31 331 64 HOH HOH . I 5 HOH B 32 332 67 HOH HOH . I 5 HOH B 33 333 69 HOH HOH . I 5 HOH B 34 334 70 HOH HOH . I 5 HOH B 35 335 71 HOH HOH . I 5 HOH B 36 336 74 HOH HOH . I 5 HOH B 37 337 75 HOH HOH . I 5 HOH B 38 338 76 HOH HOH . I 5 HOH B 39 339 77 HOH HOH . I 5 HOH B 40 340 80 HOH HOH . I 5 HOH B 41 341 82 HOH HOH . I 5 HOH B 42 342 87 HOH HOH . I 5 HOH B 43 343 88 HOH HOH . I 5 HOH B 44 344 89 HOH HOH . I 5 HOH B 45 345 90 HOH HOH . I 5 HOH B 46 346 93 HOH HOH . I 5 HOH B 47 347 95 HOH HOH . I 5 HOH B 48 348 101 HOH HOH . I 5 HOH B 49 349 102 HOH HOH . I 5 HOH B 50 350 104 HOH HOH . I 5 HOH B 51 351 107 HOH HOH . I 5 HOH B 52 352 108 HOH HOH . I 5 HOH B 53 353 110 HOH HOH . I 5 HOH B 54 354 113 HOH HOH . I 5 HOH B 55 355 114 HOH HOH . I 5 HOH B 56 356 116 HOH HOH . I 5 HOH B 57 357 117 HOH HOH . I 5 HOH B 58 358 118 HOH HOH . I 5 HOH B 59 359 120 HOH HOH . I 5 HOH B 60 360 122 HOH HOH . I 5 HOH B 61 361 123 HOH HOH . I 5 HOH B 62 362 125 HOH HOH . I 5 HOH B 63 363 126 HOH HOH . I 5 HOH B 64 364 128 HOH HOH . I 5 HOH B 65 365 131 HOH HOH . I 5 HOH B 66 366 133 HOH HOH . I 5 HOH B 67 367 134 HOH HOH . I 5 HOH B 68 368 137 HOH HOH . I 5 HOH B 69 369 141 HOH HOH . I 5 HOH B 70 370 142 HOH HOH . I 5 HOH B 71 371 147 HOH HOH . I 5 HOH B 72 372 148 HOH HOH . I 5 HOH B 73 373 149 HOH HOH . I 5 HOH B 74 374 151 HOH HOH . I 5 HOH B 75 375 156 HOH HOH . I 5 HOH B 76 376 159 HOH HOH . I 5 HOH B 77 377 161 HOH HOH . I 5 HOH B 78 378 163 HOH HOH . I 5 HOH B 79 379 166 HOH HOH . I 5 HOH B 80 380 167 HOH HOH . I 5 HOH B 81 381 169 HOH HOH . I 5 HOH B 82 382 172 HOH HOH . I 5 HOH B 83 383 178 HOH HOH . I 5 HOH B 84 384 179 HOH HOH . I 5 HOH B 85 385 180 HOH HOH . I 5 HOH B 86 386 181 HOH HOH . I 5 HOH B 87 387 182 HOH HOH . I 5 HOH B 88 388 183 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 FCN . . . D 3 27.944 6.428 9.899 1 20.95 ? C1 FCN 202 A 1 HETATM 2 C C2 FCN . . . D 3 27.467 7.612 9.039 1 20.24 ? C2 FCN 202 A 1 HETATM 3 C C3 FCN . . . D 3 26.439 8.55 9.629 1 18.09 ? C3 FCN 202 A 1 HETATM 4 O O FCN . . . D 3 26.917 6.295 8.897 1 22.38 ? O FCN 202 A 1 HETATM 5 P P FCN . . . D 3 27.262 6.018 11.556 1 21.05 ? P FCN 202 A 1 HETATM 6 O O1P FCN . . . D 3 28.305 5.187 12.211 1 21.82 ? O1P FCN 202 A 1 HETATM 7 O O2P FCN . . . D 3 26.882 7.3 12.434 1 21.7 ? O2P FCN 202 A 1 HETATM 8 O O3P FCN . . . D 3 25.975 5.087 11.357 1 20.1 ? O3P FCN 202 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #