data_4JD1
#
_model_server_result.job_id            A2YBa6NtEkMcOe4bmSth8Q 
_model_server_result.datetime_utc      '2024-11-04 22:52:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4jd1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":203}' 
#
_entry.id    4JD1 
#
_exptl.entry_id    4JD1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              138.059 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            FOSFOMYCIN 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4JD1 
_cell.length_a            48.157 
_cell.length_b            48.157 
_cell.length_c            147.588 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4JD1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        78 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 8 A HIS 7 1_555 F ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
metalc ? metalc2 A NE2 HIS 67 A HIS 66 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? 
metalc ? metalc3 A OE1 GLU 116 A GLU 115 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
metalc ? metalc4 C ZN ZN . A ZN 201 1_555 D O3P FCN . A FCN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.867 ? 
metalc ? metalc5 C ZN ZN . A ZN 201 1_555 D O FCN . A FCN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? 
metalc ? metalc6 C ZN ZN . A ZN 201 1_555 B NE2 HIS 8 B HIS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? 
metalc ? metalc7 B NE2 HIS 67 B HIS 66 1_555 F ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? 
metalc ? metalc8 B OE1 GLU 116 B GLU 115 1_555 F ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? 
metalc ? metalc9 F ZN ZN . B ZN 202 1_555 G O3P FCN . B FCN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? 
#
_chem_comp.formula           'C3 H7 O4 P' 
_chem_comp.formula_weight    138.059 
_chem_comp.id                FCN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              FOSFOMYCIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '1,2-EPOXYPROPYLPHOSPHONIC ACID' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 FCN sing 83 n n 
C1 O FCN sing 84 n n 
C1 P FCN sing 85 n n 
C1 H1 FCN sing 86 n n 
C2 C3 FCN sing 87 n n 
C2 O FCN sing 88 n n 
C2 H2 FCN sing 89 n n 
C3 H31 FCN sing 90 n n 
C3 H32 FCN sing 91 n n 
C3 H33 FCN sing 92 n n 
P O1P FCN doub 93 n n 
P O2P FCN sing 94 n n 
P O3P FCN sing 95 n n 
O2P HOP2 FCN sing 96 n n 
O3P HOP3 FCN sing 97 n n 
#
_atom_sites.entry_id                     4JD1 
_atom_sites.fract_transf_matrix[1][1]    0.020765 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020765 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006776 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 201 150 ZN ZN . 
D 3 FCN A 1 202 151 FCN FCN . 
E 4 PGE B 1 201 152 PGE PGE . 
F 2 ZN B 1 202 150 ZN ZN . 
G 3 FCN B 1 203 151 FCN FCN . 
H 5 HOH A 1 301 1 HOH HOH . 
H 5 HOH A 2 302 5 HOH HOH . 
H 5 HOH A 3 303 6 HOH HOH . 
H 5 HOH A 4 304 7 HOH HOH . 
H 5 HOH A 5 305 8 HOH HOH . 
H 5 HOH A 6 306 9 HOH HOH . 
H 5 HOH A 7 307 10 HOH HOH . 
H 5 HOH A 8 308 11 HOH HOH . 
H 5 HOH A 9 309 12 HOH HOH . 
H 5 HOH A 10 310 13 HOH HOH . 
H 5 HOH A 11 311 14 HOH HOH . 
H 5 HOH A 12 312 15 HOH HOH . 
H 5 HOH A 13 313 16 HOH HOH . 
H 5 HOH A 14 314 21 HOH HOH . 
H 5 HOH A 15 315 27 HOH HOH . 
H 5 HOH A 16 316 29 HOH HOH . 
H 5 HOH A 17 317 33 HOH HOH . 
H 5 HOH A 18 318 34 HOH HOH . 
H 5 HOH A 19 319 35 HOH HOH . 
H 5 HOH A 20 320 37 HOH HOH . 
H 5 HOH A 21 321 42 HOH HOH . 
H 5 HOH A 22 322 44 HOH HOH . 
H 5 HOH A 23 323 48 HOH HOH . 
H 5 HOH A 24 324 51 HOH HOH . 
H 5 HOH A 25 325 52 HOH HOH . 
H 5 HOH A 26 326 53 HOH HOH . 
H 5 HOH A 27 327 54 HOH HOH . 
H 5 HOH A 28 328 57 HOH HOH . 
H 5 HOH A 29 329 58 HOH HOH . 
H 5 HOH A 30 330 60 HOH HOH . 
H 5 HOH A 31 331 62 HOH HOH . 
H 5 HOH A 32 332 63 HOH HOH . 
H 5 HOH A 33 333 65 HOH HOH . 
H 5 HOH A 34 334 66 HOH HOH . 
H 5 HOH A 35 335 68 HOH HOH . 
H 5 HOH A 36 336 72 HOH HOH . 
H 5 HOH A 37 337 73 HOH HOH . 
H 5 HOH A 38 338 78 HOH HOH . 
H 5 HOH A 39 339 79 HOH HOH . 
H 5 HOH A 40 340 81 HOH HOH . 
H 5 HOH A 41 341 83 HOH HOH . 
H 5 HOH A 42 342 84 HOH HOH . 
H 5 HOH A 43 343 85 HOH HOH . 
H 5 HOH A 44 344 86 HOH HOH . 
H 5 HOH A 45 345 91 HOH HOH . 
H 5 HOH A 46 346 92 HOH HOH . 
H 5 HOH A 47 347 94 HOH HOH . 
H 5 HOH A 48 348 96 HOH HOH . 
H 5 HOH A 49 349 97 HOH HOH . 
H 5 HOH A 50 350 98 HOH HOH . 
H 5 HOH A 51 351 99 HOH HOH . 
H 5 HOH A 52 352 100 HOH HOH . 
H 5 HOH A 53 353 103 HOH HOH . 
H 5 HOH A 54 354 105 HOH HOH . 
H 5 HOH A 55 355 106 HOH HOH . 
H 5 HOH A 56 356 109 HOH HOH . 
H 5 HOH A 57 357 111 HOH HOH . 
H 5 HOH A 58 358 112 HOH HOH . 
H 5 HOH A 59 359 115 HOH HOH . 
H 5 HOH A 60 360 119 HOH HOH . 
H 5 HOH A 61 361 121 HOH HOH . 
H 5 HOH A 62 362 124 HOH HOH . 
H 5 HOH A 63 363 127 HOH HOH . 
H 5 HOH A 64 364 129 HOH HOH . 
H 5 HOH A 65 365 130 HOH HOH . 
H 5 HOH A 66 366 132 HOH HOH . 
H 5 HOH A 67 367 135 HOH HOH . 
H 5 HOH A 68 368 136 HOH HOH . 
H 5 HOH A 69 369 138 HOH HOH . 
H 5 HOH A 70 370 139 HOH HOH . 
H 5 HOH A 71 371 140 HOH HOH . 
H 5 HOH A 72 372 143 HOH HOH . 
H 5 HOH A 73 373 144 HOH HOH . 
H 5 HOH A 74 374 145 HOH HOH . 
H 5 HOH A 75 375 146 HOH HOH . 
H 5 HOH A 76 376 150 HOH HOH . 
H 5 HOH A 77 377 152 HOH HOH . 
H 5 HOH A 78 378 153 HOH HOH . 
H 5 HOH A 79 379 154 HOH HOH . 
H 5 HOH A 80 380 155 HOH HOH . 
H 5 HOH A 81 381 157 HOH HOH . 
H 5 HOH A 82 382 158 HOH HOH . 
H 5 HOH A 83 383 160 HOH HOH . 
H 5 HOH A 84 384 162 HOH HOH . 
H 5 HOH A 85 385 164 HOH HOH . 
H 5 HOH A 86 386 165 HOH HOH . 
H 5 HOH A 87 387 168 HOH HOH . 
H 5 HOH A 88 388 170 HOH HOH . 
H 5 HOH A 89 389 171 HOH HOH . 
H 5 HOH A 90 390 173 HOH HOH . 
H 5 HOH A 91 391 174 HOH HOH . 
H 5 HOH A 92 392 175 HOH HOH . 
H 5 HOH A 93 393 176 HOH HOH . 
H 5 HOH A 94 394 177 HOH HOH . 
H 5 HOH A 95 395 184 HOH HOH . 
H 5 HOH A 96 396 2 HOH HOH . 
I 5 HOH B 1 301 3 HOH HOH . 
I 5 HOH B 2 302 4 HOH HOH . 
I 5 HOH B 3 303 17 HOH HOH . 
I 5 HOH B 4 304 18 HOH HOH . 
I 5 HOH B 5 305 19 HOH HOH . 
I 5 HOH B 6 306 20 HOH HOH . 
I 5 HOH B 7 307 22 HOH HOH . 
I 5 HOH B 8 308 23 HOH HOH . 
I 5 HOH B 9 309 24 HOH HOH . 
I 5 HOH B 10 310 25 HOH HOH . 
I 5 HOH B 11 311 26 HOH HOH . 
I 5 HOH B 12 312 28 HOH HOH . 
I 5 HOH B 13 313 30 HOH HOH . 
I 5 HOH B 14 314 31 HOH HOH . 
I 5 HOH B 15 315 32 HOH HOH . 
I 5 HOH B 16 316 36 HOH HOH . 
I 5 HOH B 17 317 38 HOH HOH . 
I 5 HOH B 18 318 39 HOH HOH . 
I 5 HOH B 19 319 40 HOH HOH . 
I 5 HOH B 20 320 41 HOH HOH . 
I 5 HOH B 21 321 43 HOH HOH . 
I 5 HOH B 22 322 45 HOH HOH . 
I 5 HOH B 23 323 46 HOH HOH . 
I 5 HOH B 24 324 47 HOH HOH . 
I 5 HOH B 25 325 49 HOH HOH . 
I 5 HOH B 26 326 50 HOH HOH . 
I 5 HOH B 27 327 55 HOH HOH . 
I 5 HOH B 28 328 56 HOH HOH . 
I 5 HOH B 29 329 59 HOH HOH . 
I 5 HOH B 30 330 61 HOH HOH . 
I 5 HOH B 31 331 64 HOH HOH . 
I 5 HOH B 32 332 67 HOH HOH . 
I 5 HOH B 33 333 69 HOH HOH . 
I 5 HOH B 34 334 70 HOH HOH . 
I 5 HOH B 35 335 71 HOH HOH . 
I 5 HOH B 36 336 74 HOH HOH . 
I 5 HOH B 37 337 75 HOH HOH . 
I 5 HOH B 38 338 76 HOH HOH . 
I 5 HOH B 39 339 77 HOH HOH . 
I 5 HOH B 40 340 80 HOH HOH . 
I 5 HOH B 41 341 82 HOH HOH . 
I 5 HOH B 42 342 87 HOH HOH . 
I 5 HOH B 43 343 88 HOH HOH . 
I 5 HOH B 44 344 89 HOH HOH . 
I 5 HOH B 45 345 90 HOH HOH . 
I 5 HOH B 46 346 93 HOH HOH . 
I 5 HOH B 47 347 95 HOH HOH . 
I 5 HOH B 48 348 101 HOH HOH . 
I 5 HOH B 49 349 102 HOH HOH . 
I 5 HOH B 50 350 104 HOH HOH . 
I 5 HOH B 51 351 107 HOH HOH . 
I 5 HOH B 52 352 108 HOH HOH . 
I 5 HOH B 53 353 110 HOH HOH . 
I 5 HOH B 54 354 113 HOH HOH . 
I 5 HOH B 55 355 114 HOH HOH . 
I 5 HOH B 56 356 116 HOH HOH . 
I 5 HOH B 57 357 117 HOH HOH . 
I 5 HOH B 58 358 118 HOH HOH . 
I 5 HOH B 59 359 120 HOH HOH . 
I 5 HOH B 60 360 122 HOH HOH . 
I 5 HOH B 61 361 123 HOH HOH . 
I 5 HOH B 62 362 125 HOH HOH . 
I 5 HOH B 63 363 126 HOH HOH . 
I 5 HOH B 64 364 128 HOH HOH . 
I 5 HOH B 65 365 131 HOH HOH . 
I 5 HOH B 66 366 133 HOH HOH . 
I 5 HOH B 67 367 134 HOH HOH . 
I 5 HOH B 68 368 137 HOH HOH . 
I 5 HOH B 69 369 141 HOH HOH . 
I 5 HOH B 70 370 142 HOH HOH . 
I 5 HOH B 71 371 147 HOH HOH . 
I 5 HOH B 72 372 148 HOH HOH . 
I 5 HOH B 73 373 149 HOH HOH . 
I 5 HOH B 74 374 151 HOH HOH . 
I 5 HOH B 75 375 156 HOH HOH . 
I 5 HOH B 76 376 159 HOH HOH . 
I 5 HOH B 77 377 161 HOH HOH . 
I 5 HOH B 78 378 163 HOH HOH . 
I 5 HOH B 79 379 166 HOH HOH . 
I 5 HOH B 80 380 167 HOH HOH . 
I 5 HOH B 81 381 169 HOH HOH . 
I 5 HOH B 82 382 172 HOH HOH . 
I 5 HOH B 83 383 178 HOH HOH . 
I 5 HOH B 84 384 179 HOH HOH . 
I 5 HOH B 85 385 180 HOH HOH . 
I 5 HOH B 86 386 181 HOH HOH . 
I 5 HOH B 87 387 182 HOH HOH . 
I 5 HOH B 88 388 183 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 FCN . . . G 3 17.368 -3.802 -11.145 1 19.63 ? C1 FCN 203 B 1 
HETATM 2 C C2 FCN . . . G 3 16.14 -3.344 -10.346 1 19.72 ? C2 FCN 203 B 1 
HETATM 3 C C3 FCN . . . G 3 15.303 -2.243 -10.955 1 20.16 ? C3 FCN 203 B 1 
HETATM 4 O O FCN . . . G 3 17.455 -2.859 -10.052 1 20.12 ? O FCN 203 B 1 
HETATM 5 P P FCN . . . G 3 17.808 -3.104 -12.804 1 20.77 ? P FCN 203 B 1 
HETATM 6 O O1P FCN . . . G 3 18.652 -4.141 -13.454 1 22.41 ? O1P FCN 203 B 1 
HETATM 7 O O2P FCN . . . G 3 16.548 -2.713 -13.703 1 22.62 ? O2P FCN 203 B 1 
HETATM 8 O O3P FCN . . . G 3 18.721 -1.812 -12.618 1 22.86 ? O3P FCN 203 B 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           8 
#