data_4JD2 # _model_server_result.job_id vTl36VFgHdcPfkr5pAtSsA _model_server_result.datetime_utc '2024-11-04 23:24:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jd2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":503}' # _entry.id 4JD2 # _exptl.entry_id 4JD2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.226 _entity.id 11 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TETRAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4JD2 _cell.length_a 231.538 _cell.length_b 231.538 _cell.length_c 109.743 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JD2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 11 M N N ? 11 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 I CA CA . A CA 501 1_555 J O1B ATP . A ATP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? metalc ? metalc2 I CA CA . A CA 501 1_555 J O2G ATP . A ATP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.643 ? metalc ? metalc3 K CA CA . B CA 501 1_555 L O1B ATP . B ATP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.566 ? metalc ? metalc4 K CA CA . B CA 501 1_555 L O2G ATP . B ATP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.697 ? # _chem_comp.formula 'C8 H18 O5' _chem_comp.formula_weight 194.226 _chem_comp.id PG4 _chem_comp.mon_nstd_flag . _chem_comp.name 'TETRAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 PG4 sing 284 n n O1 HO1 PG4 sing 285 n n C1 C2 PG4 sing 286 n n C1 H11 PG4 sing 287 n n C1 H12 PG4 sing 288 n n C2 O2 PG4 sing 289 n n C2 H21 PG4 sing 290 n n C2 H22 PG4 sing 291 n n O2 C3 PG4 sing 292 n n C3 C4 PG4 sing 293 n n C3 H31 PG4 sing 294 n n C3 H32 PG4 sing 295 n n C4 O3 PG4 sing 296 n n C4 H41 PG4 sing 297 n n C4 H42 PG4 sing 298 n n O3 C5 PG4 sing 299 n n C5 C6 PG4 sing 300 n n C5 H51 PG4 sing 301 n n C5 H52 PG4 sing 302 n n C6 O4 PG4 sing 303 n n C6 H61 PG4 sing 304 n n C6 H62 PG4 sing 305 n n O4 C7 PG4 sing 306 n n C7 C8 PG4 sing 307 n n C7 H71 PG4 sing 308 n n C7 H72 PG4 sing 309 n n C8 O5 PG4 sing 310 n n C8 H81 PG4 sing 311 n n C8 H82 PG4 sing 312 n n O5 HO5 PG4 sing 313 n n # _atom_sites.entry_id 4JD2 _atom_sites.fract_transf_matrix[1][1] 0.004319 _atom_sites.fract_transf_matrix[1][2] 0.002494 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004987 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009112 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 9 CA A 1 501 500 CA CA . J 10 ATP A 1 502 1001 ATP ATP . K 9 CA B 1 501 501 CA CA . L 10 ATP B 1 502 1002 ATP ATP . M 11 PG4 B 1 503 1 PG4 PG4 . N 11 PG4 F 1 201 1 PG4 PG4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PG4 . . . M 11 87.745 -74.001 -13.516 1 83.82 ? O1 PG4 503 B 1 HETATM 2 C C1 PG4 . . . M 11 88.279 -75.225 -14.042 1 89.41 ? C1 PG4 503 B 1 HETATM 3 C C2 PG4 . . . M 11 89.788 -75.157 -14.293 1 94.18 ? C2 PG4 503 B 1 HETATM 4 O O2 PG4 . . . M 11 90.124 -75.252 -15.697 1 99.62 ? O2 PG4 503 B 1 HETATM 5 C C3 PG4 . . . M 11 91.457 -74.782 -16.008 1 104.41 ? C3 PG4 503 B 1 HETATM 6 C C4 PG4 . . . M 11 91.644 -74.178 -17.415 1 104.3 ? C4 PG4 503 B 1 HETATM 7 O O3 PG4 . . . M 11 91.011 -72.887 -17.531 1 102.21 ? O3 PG4 503 B 1 HETATM 8 C C5 PG4 . . . M 11 91.738 -71.804 -18.126 1 100.05 ? C5 PG4 503 B 1 HETATM 9 C C6 PG4 . . . M 11 91.752 -70.597 -17.174 1 100.74 ? C6 PG4 503 B 1 HETATM 10 O O4 PG4 . . . M 11 90.567 -69.786 -17.263 1 98.74 ? O4 PG4 503 B 1 HETATM 11 C C7 PG4 . . . M 11 90.263 -69.02 -16.077 1 100.58 ? C7 PG4 503 B 1 HETATM 12 C C8 PG4 . . . M 11 89.195 -69.732 -15.238 1 102.21 ? C8 PG4 503 B 1 HETATM 13 O O5 PG4 . . . M 11 88.681 -68.963 -14.147 1 102.36 ? O5 PG4 503 B 1 # _model_server_stats.io_time_ms 36 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 245 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 13 #