data_4JD3
#
_model_server_result.job_id            AI_fVVpYFU-5YfLp_TNEgg 
_model_server_result.datetime_utc      '2024-11-05 04:55:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4jd3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":400}' 
#
_entry.id    4JD3 
#
_exptl.entry_id    4JD3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              256.424 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PALMITIC ACID' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          97.82 
_cell.angle_gamma         90 
_cell.entry_id            4JD3 
_cell.length_a            72.166 
_cell.length_b            48.863 
_cell.length_c            194.473 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4JD3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,H,I,K,M 1 1 
B,D,F,G,J,L,N 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 H N N 
? 2 J N N 
#
_chem_comp.formula           'C16 H32 O2' 
_chem_comp.formula_weight    256.424 
_chem_comp.id                PLM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PALMITIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PLM sing 346 n n 
C1 O2 PLM doub 347 n n 
C1 C2 PLM sing 348 n n 
O1 H PLM sing 349 n n 
C2 C3 PLM sing 350 n n 
C2 H21 PLM sing 351 n n 
C2 H22 PLM sing 352 n n 
C3 C4 PLM sing 353 n n 
C3 H31 PLM sing 354 n n 
C3 H32 PLM sing 355 n n 
C4 C5 PLM sing 356 n n 
C4 H41 PLM sing 357 n n 
C4 H42 PLM sing 358 n n 
C5 C6 PLM sing 359 n n 
C5 H51 PLM sing 360 n n 
C5 H52 PLM sing 361 n n 
C6 C7 PLM sing 362 n n 
C6 H61 PLM sing 363 n n 
C6 H62 PLM sing 364 n n 
C7 C8 PLM sing 365 n n 
C7 H71 PLM sing 366 n n 
C7 H72 PLM sing 367 n n 
C8 C9 PLM sing 368 n n 
C8 H81 PLM sing 369 n n 
C8 H82 PLM sing 370 n n 
C9 CA PLM sing 371 n n 
C9 H91 PLM sing 372 n n 
C9 H92 PLM sing 373 n n 
CA CB PLM sing 374 n n 
CA HA1 PLM sing 375 n n 
CA HA2 PLM sing 376 n n 
CB CC PLM sing 377 n n 
CB HB1 PLM sing 378 n n 
CB HB2 PLM sing 379 n n 
CC CD PLM sing 380 n n 
CC HC1 PLM sing 381 n n 
CC HC2 PLM sing 382 n n 
CD CE PLM sing 383 n n 
CD HD1 PLM sing 384 n n 
CD HD2 PLM sing 385 n n 
CE CF PLM sing 386 n n 
CE HE1 PLM sing 387 n n 
CE HE2 PLM sing 388 n n 
CF CG PLM sing 389 n n 
CF HF1 PLM sing 390 n n 
CF HF2 PLM sing 391 n n 
CG HG1 PLM sing 392 n n 
CG HG2 PLM sing 393 n n 
CG HG3 PLM sing 394 n n 
#
_atom_sites.entry_id                     4JD3 
_atom_sites.fract_transf_matrix[1][1]    0.013857 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001903 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020465 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00519 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 PLM A 1 400 400 PLM PLM . 
F 2 PLM C 1 401 401 PLM PLM . 
G 3 COA C 1 402 402 COA COA . 
H 2 PLM B 1 401 401 PLM PLM . 
I 3 COA B 1 402 402 COA COA . 
J 2 PLM D 1 400 400 PLM PLM . 
K 4 HOH A 1 501 501 HOH HOH . 
K 4 HOH A 2 502 502 HOH HOH . 
K 4 HOH A 3 503 503 HOH HOH . 
K 4 HOH A 4 504 504 HOH HOH . 
K 4 HOH A 5 505 505 HOH HOH . 
K 4 HOH A 6 506 506 HOH HOH . 
K 4 HOH A 7 507 507 HOH HOH . 
K 4 HOH A 8 508 508 HOH HOH . 
K 4 HOH A 9 509 509 HOH HOH . 
K 4 HOH A 10 510 510 HOH HOH . 
K 4 HOH A 11 511 511 HOH HOH . 
K 4 HOH A 12 512 512 HOH HOH . 
K 4 HOH A 13 513 513 HOH HOH . 
K 4 HOH A 14 514 514 HOH HOH . 
K 4 HOH A 15 515 515 HOH HOH . 
K 4 HOH A 16 516 516 HOH HOH . 
K 4 HOH A 17 517 517 HOH HOH . 
K 4 HOH A 18 518 518 HOH HOH . 
K 4 HOH A 19 519 519 HOH HOH . 
K 4 HOH A 20 520 520 HOH HOH . 
L 4 HOH C 1 501 501 HOH HOH . 
L 4 HOH C 2 502 502 HOH HOH . 
L 4 HOH C 3 503 503 HOH HOH . 
L 4 HOH C 4 504 504 HOH HOH . 
L 4 HOH C 5 505 505 HOH HOH . 
L 4 HOH C 6 506 506 HOH HOH . 
L 4 HOH C 7 507 507 HOH HOH . 
L 4 HOH C 8 508 508 HOH HOH . 
L 4 HOH C 9 509 509 HOH HOH . 
L 4 HOH C 10 510 510 HOH HOH . 
L 4 HOH C 11 511 511 HOH HOH . 
L 4 HOH C 12 512 512 HOH HOH . 
L 4 HOH C 13 513 513 HOH HOH . 
L 4 HOH C 14 514 514 HOH HOH . 
L 4 HOH C 15 515 515 HOH HOH . 
L 4 HOH C 16 516 516 HOH HOH . 
L 4 HOH C 17 517 517 HOH HOH . 
L 4 HOH C 18 518 518 HOH HOH . 
L 4 HOH C 19 519 519 HOH HOH . 
L 4 HOH C 20 520 520 HOH HOH . 
L 4 HOH C 21 521 521 HOH HOH . 
L 4 HOH C 22 522 522 HOH HOH . 
L 4 HOH C 23 523 523 HOH HOH . 
L 4 HOH C 24 524 524 HOH HOH . 
L 4 HOH C 25 525 525 HOH HOH . 
M 4 HOH B 1 501 501 HOH HOH . 
M 4 HOH B 2 502 502 HOH HOH . 
M 4 HOH B 3 503 503 HOH HOH . 
M 4 HOH B 4 504 504 HOH HOH . 
M 4 HOH B 5 505 505 HOH HOH . 
M 4 HOH B 6 506 506 HOH HOH . 
M 4 HOH B 7 507 507 HOH HOH . 
M 4 HOH B 8 508 508 HOH HOH . 
M 4 HOH B 9 509 509 HOH HOH . 
M 4 HOH B 10 510 510 HOH HOH . 
M 4 HOH B 11 511 511 HOH HOH . 
M 4 HOH B 12 512 512 HOH HOH . 
M 4 HOH B 13 513 513 HOH HOH . 
M 4 HOH B 14 514 514 HOH HOH . 
M 4 HOH B 15 515 515 HOH HOH . 
M 4 HOH B 16 516 516 HOH HOH . 
M 4 HOH B 17 517 517 HOH HOH . 
M 4 HOH B 18 518 518 HOH HOH . 
M 4 HOH B 19 519 519 HOH HOH . 
M 4 HOH B 20 520 520 HOH HOH . 
M 4 HOH B 21 521 521 HOH HOH . 
M 4 HOH B 22 522 522 HOH HOH . 
M 4 HOH B 23 523 523 HOH HOH . 
M 4 HOH B 24 524 524 HOH HOH . 
M 4 HOH B 25 525 525 HOH HOH . 
M 4 HOH B 26 526 526 HOH HOH . 
M 4 HOH B 27 527 527 HOH HOH . 
M 4 HOH B 28 528 528 HOH HOH . 
M 4 HOH B 29 529 529 HOH HOH . 
M 4 HOH B 30 530 530 HOH HOH . 
N 4 HOH D 1 501 501 HOH HOH . 
N 4 HOH D 2 502 502 HOH HOH . 
N 4 HOH D 3 503 503 HOH HOH . 
N 4 HOH D 4 504 504 HOH HOH . 
N 4 HOH D 5 505 505 HOH HOH . 
N 4 HOH D 6 506 506 HOH HOH . 
N 4 HOH D 7 507 507 HOH HOH . 
N 4 HOH D 8 508 508 HOH HOH . 
N 4 HOH D 9 509 509 HOH HOH . 
N 4 HOH D 10 510 510 HOH HOH . 
N 4 HOH D 11 511 511 HOH HOH . 
N 4 HOH D 12 512 512 HOH HOH . 
N 4 HOH D 13 513 513 HOH HOH . 
N 4 HOH D 14 514 514 HOH HOH . 
N 4 HOH D 15 515 515 HOH HOH . 
N 4 HOH D 16 516 516 HOH HOH . 
N 4 HOH D 17 517 517 HOH HOH . 
N 4 HOH D 18 518 518 HOH HOH . 
N 4 HOH D 19 519 519 HOH HOH . 
N 4 HOH D 20 520 520 HOH HOH . 
N 4 HOH D 21 521 521 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PLM . . . E 2 7.269 -3.965 78.679 1 45.22 ? C1 PLM 400 A 1 
HETATM 2 O O1 PLM . . . E 2 7.274 -3.956 79.909 1 45.8 ? O1 PLM 400 A 1 
HETATM 3 O O2 PLM . . . E 2 8.245 -4.246 77.988 1 46.67 ? O2 PLM 400 A 1 
HETATM 4 C C2 PLM . . . E 2 6.021 -3.491 77.915 1 47.53 ? C2 PLM 400 A 1 
HETATM 5 C C3 PLM . . . E 2 4.928 -4.512 77.603 1 40.12 ? C3 PLM 400 A 1 
HETATM 6 C C4 PLM . . . E 2 5.372 -5.768 76.926 1 34.98 ? C4 PLM 400 A 1 
HETATM 7 C C5 PLM . . . E 2 5.182 -6.972 77.82 1 33.73 ? C5 PLM 400 A 1 
HETATM 8 C C6 PLM . . . E 2 3.955 -6.831 78.705 1 33.71 ? C6 PLM 400 A 1 
HETATM 9 C C7 PLM . . . E 2 4.352 -6.775 80.139 1 35.59 ? C7 PLM 400 A 1 
HETATM 10 C C8 PLM . . . E 2 3.232 -6.869 81.099 1 29.55 ? C8 PLM 400 A 1 
HETATM 11 C C9 PLM . . . E 2 2.732 -8.253 81.138 1 29.29 ? C9 PLM 400 A 1 
HETATM 12 C CA PLM . . . E 2 2.469 -8.62 82.566 1 36.34 ? CA PLM 400 A 1 
HETATM 13 C CB PLM . . . E 2 1.128 -8.211 83.025 1 36.43 ? CB PLM 400 A 1 
HETATM 14 C CC PLM . . . E 2 0.834 -8.9 84.289 1 30.59 ? CC PLM 400 A 1 
HETATM 15 C CD PLM . . . E 2 -0.523 -9.513 84.277 1 36.2 ? CD PLM 400 A 1 
HETATM 16 C CE PLM . . . E 2 -0.589 -10.711 83.395 1 38.25 ? CE PLM 400 A 1 
HETATM 17 C CF PLM . . . E 2 -0.695 -11.954 84.196 1 42.39 ? CF PLM 400 A 1 
HETATM 18 C CG PLM . . . E 2 -2.048 -12.575 84.044 1 36.86 ? CG PLM 400 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           18 
#