data_4JD3 # _model_server_result.job_id gqrei383wFslo1BTSF6MUA _model_server_result.datetime_utc '2024-11-05 05:01:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jd3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":400}' # _entry.id 4JD3 # _exptl.entry_id 4JD3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 256.424 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PALMITIC ACID' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.82 _cell.angle_gamma 90 _cell.entry_id 4JD3 _cell.length_a 72.166 _cell.length_b 48.863 _cell.length_c 194.473 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JD3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,H,I,K,M 1 1 B,D,F,G,J,L,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 H N N ? 2 J N N # _chem_comp.formula 'C16 H32 O2' _chem_comp.formula_weight 256.424 _chem_comp.id PLM _chem_comp.mon_nstd_flag . _chem_comp.name 'PALMITIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PLM sing 346 n n C1 O2 PLM doub 347 n n C1 C2 PLM sing 348 n n O1 H PLM sing 349 n n C2 C3 PLM sing 350 n n C2 H21 PLM sing 351 n n C2 H22 PLM sing 352 n n C3 C4 PLM sing 353 n n C3 H31 PLM sing 354 n n C3 H32 PLM sing 355 n n C4 C5 PLM sing 356 n n C4 H41 PLM sing 357 n n C4 H42 PLM sing 358 n n C5 C6 PLM sing 359 n n C5 H51 PLM sing 360 n n C5 H52 PLM sing 361 n n C6 C7 PLM sing 362 n n C6 H61 PLM sing 363 n n C6 H62 PLM sing 364 n n C7 C8 PLM sing 365 n n C7 H71 PLM sing 366 n n C7 H72 PLM sing 367 n n C8 C9 PLM sing 368 n n C8 H81 PLM sing 369 n n C8 H82 PLM sing 370 n n C9 CA PLM sing 371 n n C9 H91 PLM sing 372 n n C9 H92 PLM sing 373 n n CA CB PLM sing 374 n n CA HA1 PLM sing 375 n n CA HA2 PLM sing 376 n n CB CC PLM sing 377 n n CB HB1 PLM sing 378 n n CB HB2 PLM sing 379 n n CC CD PLM sing 380 n n CC HC1 PLM sing 381 n n CC HC2 PLM sing 382 n n CD CE PLM sing 383 n n CD HD1 PLM sing 384 n n CD HD2 PLM sing 385 n n CE CF PLM sing 386 n n CE HE1 PLM sing 387 n n CE HE2 PLM sing 388 n n CF CG PLM sing 389 n n CF HF1 PLM sing 390 n n CF HF2 PLM sing 391 n n CG HG1 PLM sing 392 n n CG HG2 PLM sing 393 n n CG HG3 PLM sing 394 n n # _atom_sites.entry_id 4JD3 _atom_sites.fract_transf_matrix[1][1] 0.013857 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001903 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020465 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00519 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 PLM A 1 400 400 PLM PLM . F 2 PLM C 1 401 401 PLM PLM . G 3 COA C 1 402 402 COA COA . H 2 PLM B 1 401 401 PLM PLM . I 3 COA B 1 402 402 COA COA . J 2 PLM D 1 400 400 PLM PLM . K 4 HOH A 1 501 501 HOH HOH . K 4 HOH A 2 502 502 HOH HOH . K 4 HOH A 3 503 503 HOH HOH . K 4 HOH A 4 504 504 HOH HOH . K 4 HOH A 5 505 505 HOH HOH . K 4 HOH A 6 506 506 HOH HOH . K 4 HOH A 7 507 507 HOH HOH . K 4 HOH A 8 508 508 HOH HOH . K 4 HOH A 9 509 509 HOH HOH . K 4 HOH A 10 510 510 HOH HOH . K 4 HOH A 11 511 511 HOH HOH . K 4 HOH A 12 512 512 HOH HOH . K 4 HOH A 13 513 513 HOH HOH . K 4 HOH A 14 514 514 HOH HOH . K 4 HOH A 15 515 515 HOH HOH . K 4 HOH A 16 516 516 HOH HOH . K 4 HOH A 17 517 517 HOH HOH . K 4 HOH A 18 518 518 HOH HOH . K 4 HOH A 19 519 519 HOH HOH . K 4 HOH A 20 520 520 HOH HOH . L 4 HOH C 1 501 501 HOH HOH . L 4 HOH C 2 502 502 HOH HOH . L 4 HOH C 3 503 503 HOH HOH . L 4 HOH C 4 504 504 HOH HOH . L 4 HOH C 5 505 505 HOH HOH . L 4 HOH C 6 506 506 HOH HOH . L 4 HOH C 7 507 507 HOH HOH . L 4 HOH C 8 508 508 HOH HOH . L 4 HOH C 9 509 509 HOH HOH . L 4 HOH C 10 510 510 HOH HOH . L 4 HOH C 11 511 511 HOH HOH . L 4 HOH C 12 512 512 HOH HOH . L 4 HOH C 13 513 513 HOH HOH . L 4 HOH C 14 514 514 HOH HOH . L 4 HOH C 15 515 515 HOH HOH . L 4 HOH C 16 516 516 HOH HOH . L 4 HOH C 17 517 517 HOH HOH . L 4 HOH C 18 518 518 HOH HOH . L 4 HOH C 19 519 519 HOH HOH . L 4 HOH C 20 520 520 HOH HOH . L 4 HOH C 21 521 521 HOH HOH . L 4 HOH C 22 522 522 HOH HOH . L 4 HOH C 23 523 523 HOH HOH . L 4 HOH C 24 524 524 HOH HOH . L 4 HOH C 25 525 525 HOH HOH . M 4 HOH B 1 501 501 HOH HOH . M 4 HOH B 2 502 502 HOH HOH . M 4 HOH B 3 503 503 HOH HOH . M 4 HOH B 4 504 504 HOH HOH . M 4 HOH B 5 505 505 HOH HOH . M 4 HOH B 6 506 506 HOH HOH . M 4 HOH B 7 507 507 HOH HOH . M 4 HOH B 8 508 508 HOH HOH . M 4 HOH B 9 509 509 HOH HOH . M 4 HOH B 10 510 510 HOH HOH . M 4 HOH B 11 511 511 HOH HOH . M 4 HOH B 12 512 512 HOH HOH . M 4 HOH B 13 513 513 HOH HOH . M 4 HOH B 14 514 514 HOH HOH . M 4 HOH B 15 515 515 HOH HOH . M 4 HOH B 16 516 516 HOH HOH . M 4 HOH B 17 517 517 HOH HOH . M 4 HOH B 18 518 518 HOH HOH . M 4 HOH B 19 519 519 HOH HOH . M 4 HOH B 20 520 520 HOH HOH . M 4 HOH B 21 521 521 HOH HOH . M 4 HOH B 22 522 522 HOH HOH . M 4 HOH B 23 523 523 HOH HOH . M 4 HOH B 24 524 524 HOH HOH . M 4 HOH B 25 525 525 HOH HOH . M 4 HOH B 26 526 526 HOH HOH . M 4 HOH B 27 527 527 HOH HOH . M 4 HOH B 28 528 528 HOH HOH . M 4 HOH B 29 529 529 HOH HOH . M 4 HOH B 30 530 530 HOH HOH . N 4 HOH D 1 501 501 HOH HOH . N 4 HOH D 2 502 502 HOH HOH . N 4 HOH D 3 503 503 HOH HOH . N 4 HOH D 4 504 504 HOH HOH . N 4 HOH D 5 505 505 HOH HOH . N 4 HOH D 6 506 506 HOH HOH . N 4 HOH D 7 507 507 HOH HOH . N 4 HOH D 8 508 508 HOH HOH . N 4 HOH D 9 509 509 HOH HOH . N 4 HOH D 10 510 510 HOH HOH . N 4 HOH D 11 511 511 HOH HOH . N 4 HOH D 12 512 512 HOH HOH . N 4 HOH D 13 513 513 HOH HOH . N 4 HOH D 14 514 514 HOH HOH . N 4 HOH D 15 515 515 HOH HOH . N 4 HOH D 16 516 516 HOH HOH . N 4 HOH D 17 517 517 HOH HOH . N 4 HOH D 18 518 518 HOH HOH . N 4 HOH D 19 519 519 HOH HOH . N 4 HOH D 20 520 520 HOH HOH . N 4 HOH D 21 521 521 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PLM . . . J 2 21.475 12.68 15.268 1 37.02 ? C1 PLM 400 D 1 HETATM 2 O O1 PLM . . . J 2 22.3 12.163 16.037 1 39.98 ? O1 PLM 400 D 1 HETATM 3 O O2 PLM . . . J 2 20.913 13.892 15.202 1 41.35 ? O2 PLM 400 D 1 HETATM 4 C C2 PLM . . . J 2 20.946 11.399 14.735 1 36.88 ? C2 PLM 400 D 1 HETATM 5 C C3 PLM . . . J 2 21.812 10.636 13.72 1 31.19 ? C3 PLM 400 D 1 HETATM 6 C C4 PLM . . . J 2 21.868 11.286 12.384 1 30.11 ? C4 PLM 400 D 1 HETATM 7 C C5 PLM . . . J 2 22.825 10.476 11.463 1 25.9 ? C5 PLM 400 D 1 HETATM 8 C C6 PLM . . . J 2 22.413 10.983 10.148 1 26.73 ? C6 PLM 400 D 1 HETATM 9 C C7 PLM . . . J 2 23.24 10.748 8.935 1 26.7 ? C7 PLM 400 D 1 HETATM 10 C C8 PLM . . . J 2 23.82 9.411 8.823 1 25.97 ? C8 PLM 400 D 1 HETATM 11 C C9 PLM . . . J 2 24.105 9.576 7.346 1 29.7 ? C9 PLM 400 D 1 HETATM 12 C CA PLM . . . J 2 25.037 8.626 6.647 1 35.74 ? CA PLM 400 D 1 HETATM 13 C CB PLM . . . J 2 25.088 7.144 7.015 1 34.64 ? CB PLM 400 D 1 HETATM 14 C CC PLM . . . J 2 25.668 6.634 5.712 1 33.7 ? CC PLM 400 D 1 HETATM 15 C CD PLM . . . J 2 26.237 5.258 5.504 1 38.61 ? CD PLM 400 D 1 HETATM 16 C CE PLM . . . J 2 27.645 5.038 6.167 1 33.28 ? CE PLM 400 D 1 HETATM 17 C CF PLM . . . J 2 28.104 3.646 5.568 1 33.74 ? CF PLM 400 D 1 HETATM 18 C CG PLM . . . J 2 28.18 3.585 3.998 1 34.28 ? CG PLM 400 D 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 223 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 18 #