data_4JD6
#
_model_server_result.job_id            viyz7gIE1XVEdBzqsNGbkA 
_model_server_result.datetime_utc      '2024-11-27 17:43:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4jd6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":500}' 
#
_entry.id    4JD6 
#
_exptl.entry_id    4JD6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              767.534 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'COENZYME A' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          104.7 
_cell.angle_gamma         90 
_cell.entry_id            4JD6 
_cell.length_a            82.226 
_cell.length_b            154.908 
_cell.length_c            115.286 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4JD6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 I N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
#
_chem_comp.formula           'C21 H36 N7 O16 P3 S' 
_chem_comp.formula_weight    767.534 
_chem_comp.id                COA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'COENZYME A' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1A C2A COA sing 70 n y 
N1A C6A COA doub 71 n y 
C2A N3A COA doub 72 n y 
C2A H2A COA sing 73 n n 
N3A C4A COA sing 74 n y 
C4A C5A COA doub 75 n y 
C4A N9A COA sing 76 n y 
C5A C6A COA sing 77 n y 
C5A N7A COA sing 78 n y 
C6A N6A COA sing 79 n n 
N6A H61A COA sing 80 n n 
N6A H62A COA sing 81 n n 
N7A C8A COA doub 82 n y 
C8A N9A COA sing 83 n y 
C8A H8A COA sing 84 n n 
N9A C1B COA sing 85 n n 
C1B C2B COA sing 86 n n 
C1B O4B COA sing 87 n n 
C1B H1B COA sing 88 n n 
C2B O2B COA sing 89 n n 
C2B C3B COA sing 90 n n 
C2B H2B COA sing 91 n n 
O2B HO2A COA sing 92 n n 
C3B O3B COA sing 93 n n 
C3B C4B COA sing 94 n n 
C3B H3B COA sing 95 n n 
O3B P3B COA sing 96 n n 
P3B O7A COA doub 97 n n 
P3B O8A COA sing 98 n n 
P3B O9A COA sing 99 n n 
O8A HOA8 COA sing 100 n n 
O9A HOA9 COA sing 101 n n 
C4B O4B COA sing 102 n n 
C4B C5B COA sing 103 n n 
C4B H4B COA sing 104 n n 
C5B O5B COA sing 105 n n 
C5B H51A COA sing 106 n n 
C5B H52A COA sing 107 n n 
O5B P1A COA sing 108 n n 
P1A O1A COA doub 109 n n 
P1A O2A COA sing 110 n n 
P1A O3A COA sing 111 n n 
O2A HOA2 COA sing 112 n n 
O3A P2A COA sing 113 n n 
P2A O4A COA doub 114 n n 
P2A O5A COA sing 115 n n 
P2A O6A COA sing 116 n n 
O5A HOA5 COA sing 117 n n 
O6A CCP COA sing 118 n n 
CBP CCP COA sing 119 n n 
CBP CDP COA sing 120 n n 
CBP CEP COA sing 121 n n 
CBP CAP COA sing 122 n n 
CCP H121 COA sing 123 n n 
CCP H122 COA sing 124 n n 
CDP H131 COA sing 125 n n 
CDP H132 COA sing 126 n n 
CDP H133 COA sing 127 n n 
CEP H141 COA sing 128 n n 
CEP H142 COA sing 129 n n 
CEP H143 COA sing 130 n n 
CAP OAP COA sing 131 n n 
CAP C9P COA sing 132 n n 
CAP H10 COA sing 133 n n 
OAP HO1 COA sing 134 n n 
C9P O9P COA doub 135 n n 
C9P N8P COA sing 136 n n 
N8P C7P COA sing 137 n n 
N8P HN8 COA sing 138 n n 
C7P C6P COA sing 139 n n 
C7P H71 COA sing 140 n n 
C7P H72 COA sing 141 n n 
C6P C5P COA sing 142 n n 
C6P H61 COA sing 143 n n 
C6P H62 COA sing 144 n n 
C5P O5P COA doub 145 n n 
C5P N4P COA sing 146 n n 
N4P C3P COA sing 147 n n 
N4P HN4 COA sing 148 n n 
C3P C2P COA sing 149 n n 
C3P H31 COA sing 150 n n 
C3P H32 COA sing 151 n n 
C2P S1P COA sing 152 n n 
C2P H21 COA sing 153 n n 
C2P H22 COA sing 154 n n 
S1P HS1 COA sing 155 n n 
#
_atom_sites.entry_id                     4JD6 
_atom_sites.fract_transf_matrix[1][1]    0.012162 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00319 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006455 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008968 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 COA A 1 500 500 COA COA . 
H 3 TOY A 1 501 501 TOY TOY . 
I 2 COA B 1 500 500 COA COA . 
J 3 TOY B 1 501 501 TOY TOY . 
K 2 COA C 1 500 500 COA COA . 
L 2 COA D 1 500 500 COA COA . 
M 2 COA E 1 500 500 COA COA . 
N 2 COA F 1 500 500 COA COA . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1A COA . . . L 2 23.548 -12.343 9.96 1 208.52 ? N1A COA 500 D 1 
HETATM 2 C C2A COA . . . L 2 22.869 -13.044 9.028 1 209.5 ? C2A COA 500 D 1 
HETATM 3 N N3A COA . . . L 2 23.437 -13.531 7.906 1 210.04 ? N3A COA 500 D 1 
HETATM 4 C C4A COA . . . L 2 24.758 -13.339 7.645 1 210.04 ? C4A COA 500 D 1 
HETATM 5 C C5A COA . . . L 2 25.566 -12.581 8.618 1 210.75 ? C5A COA 500 D 1 
HETATM 6 C C6A COA . . . L 2 24.87 -12.075 9.83 1 210.22 ? C6A COA 500 D 1 
HETATM 7 N N6A COA . . . L 2 25.536 -11.37 10.777 1 210.6 ? N6A COA 500 D 1 
HETATM 8 N N7A COA . . . L 2 26.817 -12.536 8.126 1 210.46 ? N7A COA 500 D 1 
HETATM 9 C C8A COA . . . L 2 26.814 -13.204 6.943 1 209.88 ? C8A COA 500 D 1 
HETATM 10 N N9A COA . . . L 2 25.588 -13.682 6.652 1 208.95 ? N9A COA 500 D 1 
HETATM 11 C C1B COA . . . L 2 25.215 -14.465 5.442 1 205.67 ? C1B COA 500 D 1 
HETATM 12 C C2B COA . . . L 2 24.816 -13.56 4.285 1 203.88 ? C2B COA 500 D 1 
HETATM 13 O O2B COA . . . L 2 23.393 -13.556 4.124 1 203.81 ? O2B COA 500 D 1 
HETATM 14 C C3B COA . . . L 2 25.509 -14.133 3.06 1 202.7 ? C3B COA 500 D 1 
HETATM 15 O O3B COA . . . L 2 24.576 -14.739 2.166 1 203.41 ? O3B COA 500 D 1 
HETATM 16 P P3B COA . . . L 2 24.752 -14.643 0.565 1 203.97 ? P3B COA 500 D 1 
HETATM 17 O O7A COA . . . L 2 24.987 -13.176 0.291 1 203.41 ? O7A COA 500 D 1 
HETATM 18 O O8A COA . . . L 2 23.439 -15.165 0.032 1 204.84 ? O8A COA 500 D 1 
HETATM 19 O O9A COA . . . L 2 25.935 -15.532 0.263 1 203.36 ? O9A COA 500 D 1 
HETATM 20 C C4B COA . . . L 2 26.488 -15.178 3.578 1 201.69 ? C4B COA 500 D 1 
HETATM 21 O O4B COA . . . L 2 26.311 -15.273 4.995 1 204.18 ? O4B COA 500 D 1 
HETATM 22 C C5B COA . . . L 2 27.93 -14.8 3.251 1 198.5 ? C5B COA 500 D 1 
HETATM 23 O O5B COA . . . L 2 28.249 -13.558 3.88 1 196.48 ? O5B COA 500 D 1 
HETATM 24 P P1A COA . . . L 2 29.738 -12.943 3.874 1 195.41 ? P1A COA 500 D 1 
HETATM 25 O O1A COA . . . L 2 29.687 -11.622 3.145 1 195.72 ? O1A COA 500 D 1 
HETATM 26 O O2A COA . . . L 2 30.709 -14.009 3.423 1 193.11 ? O2A COA 500 D 1 
HETATM 27 O O3A COA . . . L 2 29.982 -12.672 5.446 1 195.84 ? O3A COA 500 D 1 
HETATM 28 P P2A COA . . . L 2 30.453 -11.238 6.011 1 197.17 ? P2A COA 500 D 1 
HETATM 29 O O4A COA . . . L 2 29.241 -10.339 6.086 1 197.14 ? O4A COA 500 D 1 
HETATM 30 O O5A COA . . . L 2 31.658 -10.8 5.212 1 195.52 ? O5A COA 500 D 1 
HETATM 31 O O6A COA . . . L 2 30.954 -11.588 7.507 1 195.63 ? O6A COA 500 D 1 
HETATM 32 C CBP COA . . . L 2 30.586 -12.473 9.727 1 191.28 ? CBP COA 500 D 1 
HETATM 33 C CCP COA . . . L 2 30.114 -11.48 8.66 1 193.22 ? CCP COA 500 D 1 
HETATM 34 C CDP COA . . . L 2 31.603 -12.111 10.808 1 188.34 ? CDP COA 500 D 1 
HETATM 35 C CEP COA . . . L 2 29.964 -13.882 9.792 1 189.89 ? CEP COA 500 D 1 
HETATM 36 C CAP COA . . . L 2 29.418 -11.912 10.595 1 191.05 ? CAP COA 500 D 1 
HETATM 37 O OAP COA . . . L 2 28.764 -12.942 11.364 1 189.9 ? OAP COA 500 D 1 
HETATM 38 C C9P COA . . . L 2 29.732 -10.752 11.533 1 191.57 ? C9P COA 500 D 1 
HETATM 39 O O9P COA . . . L 2 30.169 -9.69 11.105 1 192.12 ? O9P COA 500 D 1 
HETATM 40 N N8P COA . . . L 2 29.478 -10.944 12.832 1 192.34 ? N8P COA 500 D 1 
HETATM 41 C C7P COA . . . L 2 30.21 -10.274 13.894 1 191.64 ? C7P COA 500 D 1 
HETATM 42 C C6P COA . . . L 2 31.308 -11.148 14.493 1 192.45 ? C6P COA 500 D 1 
HETATM 43 C C5P COA . . . L 2 30.712 -12.358 15.175 1 194.09 ? C5P COA 500 D 1 
HETATM 44 O O5P COA . . . L 2 30.109 -12.234 16.231 1 194.4 ? O5P COA 500 D 1 
HETATM 45 N N4P COA . . . L 2 30.9 -13.527 14.558 1 195.45 ? N4P COA 500 D 1 
HETATM 46 C C3P COA . . . L 2 30.081 -14.703 14.8 1 193.84 ? C3P COA 500 D 1 
HETATM 47 C C2P COA . . . L 2 30.806 -15.741 15.65 1 191.7 ? C2P COA 500 D 1 
HETATM 48 S S1P COA . . . L 2 29.774 -17.216 15.837 1 189.6 ? S1P COA 500 D 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           235 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           48 
#