data_4JD6 # _model_server_result.job_id NpVITKymyjA7NJmBxkAZMQ _model_server_result.datetime_utc '2024-11-27 17:40:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jd6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":500}' # _entry.id 4JD6 # _exptl.entry_id 4JD6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.7 _cell.angle_gamma 90 _cell.entry_id 4JD6 _cell.length_a 82.226 _cell.length_b 154.908 _cell.length_c 115.286 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JD6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 I N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 70 n y N1A C6A COA doub 71 n y C2A N3A COA doub 72 n y C2A H2A COA sing 73 n n N3A C4A COA sing 74 n y C4A C5A COA doub 75 n y C4A N9A COA sing 76 n y C5A C6A COA sing 77 n y C5A N7A COA sing 78 n y C6A N6A COA sing 79 n n N6A H61A COA sing 80 n n N6A H62A COA sing 81 n n N7A C8A COA doub 82 n y C8A N9A COA sing 83 n y C8A H8A COA sing 84 n n N9A C1B COA sing 85 n n C1B C2B COA sing 86 n n C1B O4B COA sing 87 n n C1B H1B COA sing 88 n n C2B O2B COA sing 89 n n C2B C3B COA sing 90 n n C2B H2B COA sing 91 n n O2B HO2A COA sing 92 n n C3B O3B COA sing 93 n n C3B C4B COA sing 94 n n C3B H3B COA sing 95 n n O3B P3B COA sing 96 n n P3B O7A COA doub 97 n n P3B O8A COA sing 98 n n P3B O9A COA sing 99 n n O8A HOA8 COA sing 100 n n O9A HOA9 COA sing 101 n n C4B O4B COA sing 102 n n C4B C5B COA sing 103 n n C4B H4B COA sing 104 n n C5B O5B COA sing 105 n n C5B H51A COA sing 106 n n C5B H52A COA sing 107 n n O5B P1A COA sing 108 n n P1A O1A COA doub 109 n n P1A O2A COA sing 110 n n P1A O3A COA sing 111 n n O2A HOA2 COA sing 112 n n O3A P2A COA sing 113 n n P2A O4A COA doub 114 n n P2A O5A COA sing 115 n n P2A O6A COA sing 116 n n O5A HOA5 COA sing 117 n n O6A CCP COA sing 118 n n CBP CCP COA sing 119 n n CBP CDP COA sing 120 n n CBP CEP COA sing 121 n n CBP CAP COA sing 122 n n CCP H121 COA sing 123 n n CCP H122 COA sing 124 n n CDP H131 COA sing 125 n n CDP H132 COA sing 126 n n CDP H133 COA sing 127 n n CEP H141 COA sing 128 n n CEP H142 COA sing 129 n n CEP H143 COA sing 130 n n CAP OAP COA sing 131 n n CAP C9P COA sing 132 n n CAP H10 COA sing 133 n n OAP HO1 COA sing 134 n n C9P O9P COA doub 135 n n C9P N8P COA sing 136 n n N8P C7P COA sing 137 n n N8P HN8 COA sing 138 n n C7P C6P COA sing 139 n n C7P H71 COA sing 140 n n C7P H72 COA sing 141 n n C6P C5P COA sing 142 n n C6P H61 COA sing 143 n n C6P H62 COA sing 144 n n C5P O5P COA doub 145 n n C5P N4P COA sing 146 n n N4P C3P COA sing 147 n n N4P HN4 COA sing 148 n n C3P C2P COA sing 149 n n C3P H31 COA sing 150 n n C3P H32 COA sing 151 n n C2P S1P COA sing 152 n n C2P H21 COA sing 153 n n C2P H22 COA sing 154 n n S1P HS1 COA sing 155 n n # _atom_sites.entry_id 4JD6 _atom_sites.fract_transf_matrix[1][1] 0.012162 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00319 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006455 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008968 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 COA A 1 500 500 COA COA . H 3 TOY A 1 501 501 TOY TOY . I 2 COA B 1 500 500 COA COA . J 3 TOY B 1 501 501 TOY TOY . K 2 COA C 1 500 500 COA COA . L 2 COA D 1 500 500 COA COA . M 2 COA E 1 500 500 COA COA . N 2 COA F 1 500 500 COA COA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . M 2 14.28 -17.54 58.582 1 190.51 ? N1A COA 500 E 1 HETATM 2 C C2A COA . . . M 2 13.318 -17.73 59.509 1 190.28 ? C2A COA 500 E 1 HETATM 3 N N3A COA . . . M 2 13.426 -18.615 60.521 1 190.83 ? N3A COA 500 E 1 HETATM 4 C C4A COA . . . M 2 14.538 -19.383 60.667 1 191.68 ? C4A COA 500 E 1 HETATM 5 C C5A COA . . . M 2 15.633 -19.231 59.691 1 191.9 ? C5A COA 500 E 1 HETATM 6 C C6A COA . . . M 2 15.441 -18.237 58.604 1 191.15 ? C6A COA 500 E 1 HETATM 7 N N6A COA . . . M 2 16.398 -18.035 57.666 1 191.17 ? N6A COA 500 E 1 HETATM 8 N N7A COA . . . M 2 16.596 -20.094 60.057 1 192.26 ? N7A COA 500 E 1 HETATM 9 C C8A COA . . . M 2 16.165 -20.74 61.17 1 192.26 ? C8A COA 500 E 1 HETATM 10 N N9A COA . . . M 2 14.937 -20.322 61.533 1 192.16 ? N9A COA 500 E 1 HETATM 11 C C1B COA . . . M 2 14.156 -20.812 62.702 1 191.49 ? C1B COA 500 E 1 HETATM 12 C C2B COA . . . M 2 13.402 -22.091 62.37 1 191.18 ? C2B COA 500 E 1 HETATM 13 O O2B COA . . . M 2 12.018 -21.81 62.129 1 190.5 ? O2B COA 500 E 1 HETATM 14 C C3B COA . . . M 2 13.583 -22.997 63.576 1 191.02 ? C3B COA 500 E 1 HETATM 15 O O3B COA . . . M 2 12.373 -23.091 64.326 1 192.16 ? O3B COA 500 E 1 HETATM 16 P P3B COA . . . M 2 11.892 -24.474 65 1 193.06 ? P3B COA 500 E 1 HETATM 17 O O7A COA . . . M 2 12.054 -25.511 63.913 1 193.36 ? O7A COA 500 E 1 HETATM 18 O O8A COA . . . M 2 10.456 -24.204 65.381 1 192.77 ? O8A COA 500 E 1 HETATM 19 O O9A COA . . . M 2 12.821 -24.651 66.178 1 192.76 ? O9A COA 500 E 1 HETATM 20 C C4B COA . . . M 2 14.671 -22.348 64.424 1 189.89 ? C4B COA 500 E 1 HETATM 21 O O4B COA . . . M 2 15.02 -21.104 63.806 1 191.32 ? O4B COA 500 E 1 HETATM 22 C C5B COA . . . M 2 15.904 -23.24 64.544 1 185.79 ? C5B COA 500 E 1 HETATM 23 O O5B COA . . . M 2 16.46 -23.471 63.248 1 181.33 ? O5B COA 500 E 1 HETATM 24 P P1A COA . . . M 2 17.896 -24.171 63.027 1 178.47 ? P1A COA 500 E 1 HETATM 25 O O1A COA . . . M 2 17.677 -25.407 62.187 1 178.12 ? O1A COA 500 E 1 HETATM 26 O O2A COA . . . M 2 18.604 -24.284 64.357 1 176.01 ? O2A COA 500 E 1 HETATM 27 O O3A COA . . . M 2 18.662 -23.057 62.146 1 179.8 ? O3A COA 500 E 1 HETATM 28 P P2A COA . . . M 2 19.44 -23.402 60.776 1 181.72 ? P2A COA 500 E 1 HETATM 29 O O4A COA . . . M 2 18.444 -23.335 59.641 1 181.98 ? O4A COA 500 E 1 HETATM 30 O O5A COA . . . M 2 20.24 -24.665 60.994 1 181.18 ? O5A COA 500 E 1 HETATM 31 O O6A COA . . . M 2 20.484 -22.174 60.661 1 179.97 ? O6A COA 500 E 1 HETATM 32 C CBP COA . . . M 2 20.752 -19.82 60.206 1 177.04 ? CBP COA 500 E 1 HETATM 33 C CCP COA . . . M 2 20.465 -21.202 59.61 1 177.81 ? CCP COA 500 E 1 HETATM 34 C CDP COA . . . M 2 22.073 -19.08 59.979 1 175.85 ? CDP COA 500 E 1 HETATM 35 C CEP COA . . . M 2 19.619 -19.168 60.984 1 174.93 ? CEP COA 500 E 1 HETATM 36 C CAP COA . . . M 2 20.161 -19.169 58.916 1 176.91 ? CAP COA 500 E 1 HETATM 37 O OAP COA . . . M 2 19.773 -17.797 59.141 1 176.7 ? OAP COA 500 E 1 HETATM 38 C C9P COA . . . M 2 20.996 -19.23 57.64 1 177.6 ? C9P COA 500 E 1 HETATM 39 O O9P COA . . . M 2 21.378 -20.289 57.158 1 176.44 ? O9P COA 500 E 1 HETATM 40 N N8P COA . . . M 2 21.254 -18.052 57.057 1 177.58 ? N8P COA 500 E 1 HETATM 41 C C7P COA . . . M 2 22.495 -17.745 56.366 1 177.39 ? C7P COA 500 E 1 HETATM 42 C C6P COA . . . M 2 23.482 -16.948 57.217 1 177.05 ? C6P COA 500 E 1 HETATM 43 C C5P COA . . . M 2 22.842 -15.703 57.792 1 178.12 ? C5P COA 500 E 1 HETATM 44 O O5P COA . . . M 2 22.538 -14.772 57.06 1 180.29 ? O5P COA 500 E 1 HETATM 45 N N4P COA . . . M 2 22.654 -15.701 59.114 1 176.44 ? N4P COA 500 E 1 HETATM 46 C C3P COA . . . M 2 21.972 -14.634 59.828 1 174.47 ? C3P COA 500 E 1 HETATM 47 C C2P COA . . . M 2 22.924 -13.523 60.261 1 174.09 ? C2P COA 500 E 1 HETATM 48 S S1P COA . . . M 2 22.039 -12.309 61.271 1 172.69 ? S1P COA 500 E 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 233 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #