data_4JDA
#
_model_server_result.job_id            VvOZvEFm5ZWSXJBGUHitKw 
_model_server_result.datetime_utc      '2024-12-02 06:16:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4jda 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":301}' 
#
_entry.id    4JDA 
#
_exptl.entry_id    4JDA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              264.317 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2Z,4E)-5-[(1R)-1-hydroxy-2,6,6-trimethyl-4-oxocyclohex-2-en-1-yl]-3-methylpenta-2,4-dienoic acid' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4JDA 
_cell.length_a            142.738 
_cell.length_b            142.738 
_cell.length_c            99.802 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4JDA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,I,J 1 1 
C,D,G,H,K,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C15 H20 O4' 
_chem_comp.formula_weight    264.317 
_chem_comp.id                A9S 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2Z,4E)-5-[(1R)-1-hydroxy-2,6,6-trimethyl-4-oxocyclohex-2-en-1-yl]-3-methylpenta-2,4-dienoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O3 C10 A9S doub 1 n n 
C10 O1 A9S sing 2 n n 
C10 C11 A9S sing 3 n n 
C11 C12 A9S doub 4 z n 
C12 C15 A9S sing 5 n n 
C12 C8 A9S sing 6 n n 
C8 C9 A9S doub 7 e n 
O4 C5 A9S sing 8 n n 
C7 C4 A9S sing 9 n n 
C9 C5 A9S sing 10 n n 
C5 C4 A9S sing 11 n n 
C5 C6 A9S sing 12 n n 
C4 C3 A9S doub 13 n n 
C14 C6 A9S sing 14 n n 
C6 C13 A9S sing 15 n n 
C6 C1 A9S sing 16 n n 
C3 C2 A9S sing 17 n n 
C1 C2 A9S sing 18 n n 
C2 O2 A9S doub 19 n n 
O1 H1 A9S sing 20 n n 
C11 H2 A9S sing 21 n n 
C15 H3 A9S sing 22 n n 
C15 H4 A9S sing 23 n n 
C15 H5 A9S sing 24 n n 
C8 H6 A9S sing 25 n n 
C9 H7 A9S sing 26 n n 
O4 H8 A9S sing 27 n n 
C14 H9 A9S sing 28 n n 
C14 H10 A9S sing 29 n n 
C14 H11 A9S sing 30 n n 
C13 H12 A9S sing 31 n n 
C13 H13 A9S sing 32 n n 
C13 H14 A9S sing 33 n n 
C1 H15 A9S sing 34 n n 
C1 H16 A9S sing 35 n n 
C7 H17 A9S sing 36 n n 
C7 H18 A9S sing 37 n n 
C7 H19 A9S sing 38 n n 
C3 H20 A9S sing 39 n n 
#
_atom_sites.entry_id                     4JDA 
_atom_sites.fract_transf_matrix[1][1]    0.007006 
_atom_sites.fract_transf_matrix[1][2]    0.004045 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00809 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01002 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 A9S A 1 301 220 A9S A9S . 
F 2 A9S B 1 301 220 A9S A9S . 
G 2 A9S C 1 301 220 A9S A9S . 
H 2 A9S D 1 301 220 A9S A9S . 
I 3 HOH A 1 401 2 HOH HOH . 
I 3 HOH A 2 402 10 HOH HOH . 
I 3 HOH A 3 403 13 HOH HOH . 
I 3 HOH A 4 404 16 HOH HOH . 
I 3 HOH A 5 405 17 HOH HOH . 
I 3 HOH A 6 406 26 HOH HOH . 
I 3 HOH A 7 407 34 HOH HOH . 
I 3 HOH A 8 408 36 HOH HOH . 
I 3 HOH A 9 409 51 HOH HOH . 
I 3 HOH A 10 410 52 HOH HOH . 
I 3 HOH A 11 411 54 HOH HOH . 
I 3 HOH A 12 412 56 HOH HOH . 
I 3 HOH A 13 413 57 HOH HOH . 
I 3 HOH A 14 414 70 HOH HOH . 
I 3 HOH A 15 415 74 HOH HOH . 
I 3 HOH A 16 416 81 HOH HOH . 
I 3 HOH A 17 417 88 HOH HOH . 
I 3 HOH A 18 418 92 HOH HOH . 
I 3 HOH A 19 419 95 HOH HOH . 
I 3 HOH A 20 420 97 HOH HOH . 
J 3 HOH B 1 401 5 HOH HOH . 
J 3 HOH B 2 402 7 HOH HOH . 
J 3 HOH B 3 403 8 HOH HOH . 
J 3 HOH B 4 404 11 HOH HOH . 
J 3 HOH B 5 405 18 HOH HOH . 
J 3 HOH B 6 406 28 HOH HOH . 
J 3 HOH B 7 407 30 HOH HOH . 
J 3 HOH B 8 408 31 HOH HOH . 
J 3 HOH B 9 409 40 HOH HOH . 
J 3 HOH B 10 410 42 HOH HOH . 
J 3 HOH B 11 411 49 HOH HOH . 
J 3 HOH B 12 412 59 HOH HOH . 
J 3 HOH B 13 413 60 HOH HOH . 
J 3 HOH B 14 414 61 HOH HOH . 
J 3 HOH B 15 415 63 HOH HOH . 
J 3 HOH B 16 416 68 HOH HOH . 
J 3 HOH B 17 417 75 HOH HOH . 
J 3 HOH B 18 418 77 HOH HOH . 
J 3 HOH B 19 419 85 HOH HOH . 
J 3 HOH B 20 420 86 HOH HOH . 
J 3 HOH B 21 421 94 HOH HOH . 
J 3 HOH B 22 422 96 HOH HOH . 
K 3 HOH C 1 401 35 HOH HOH . 
K 3 HOH C 2 402 1 HOH HOH . 
K 3 HOH C 3 403 9 HOH HOH . 
K 3 HOH C 4 404 12 HOH HOH . 
K 3 HOH C 5 405 15 HOH HOH . 
K 3 HOH C 6 406 19 HOH HOH . 
K 3 HOH C 7 407 20 HOH HOH . 
K 3 HOH C 8 408 21 HOH HOH . 
K 3 HOH C 9 409 22 HOH HOH . 
K 3 HOH C 10 410 23 HOH HOH . 
K 3 HOH C 11 411 25 HOH HOH . 
K 3 HOH C 12 412 27 HOH HOH . 
K 3 HOH C 13 413 29 HOH HOH . 
K 3 HOH C 14 414 32 HOH HOH . 
K 3 HOH C 15 415 39 HOH HOH . 
K 3 HOH C 16 416 43 HOH HOH . 
K 3 HOH C 17 417 45 HOH HOH . 
K 3 HOH C 18 418 47 HOH HOH . 
K 3 HOH C 19 419 48 HOH HOH . 
K 3 HOH C 20 420 55 HOH HOH . 
K 3 HOH C 21 421 62 HOH HOH . 
K 3 HOH C 22 422 66 HOH HOH . 
K 3 HOH C 23 423 67 HOH HOH . 
K 3 HOH C 24 424 69 HOH HOH . 
K 3 HOH C 25 425 73 HOH HOH . 
K 3 HOH C 26 426 76 HOH HOH . 
K 3 HOH C 27 427 79 HOH HOH . 
K 3 HOH C 28 428 80 HOH HOH . 
K 3 HOH C 29 429 83 HOH HOH . 
K 3 HOH C 30 430 84 HOH HOH . 
K 3 HOH C 31 431 87 HOH HOH . 
K 3 HOH C 32 432 89 HOH HOH . 
K 3 HOH C 33 433 93 HOH HOH . 
L 3 HOH D 1 401 44 HOH HOH . 
L 3 HOH D 2 402 64 HOH HOH . 
L 3 HOH D 3 403 65 HOH HOH . 
L 3 HOH D 4 404 4 HOH HOH . 
L 3 HOH D 5 405 6 HOH HOH . 
L 3 HOH D 6 406 14 HOH HOH . 
L 3 HOH D 7 407 24 HOH HOH . 
L 3 HOH D 8 408 33 HOH HOH . 
L 3 HOH D 9 409 37 HOH HOH . 
L 3 HOH D 10 410 38 HOH HOH . 
L 3 HOH D 11 411 41 HOH HOH . 
L 3 HOH D 12 412 46 HOH HOH . 
L 3 HOH D 13 413 50 HOH HOH . 
L 3 HOH D 14 414 58 HOH HOH . 
L 3 HOH D 15 415 71 HOH HOH . 
L 3 HOH D 16 416 72 HOH HOH . 
L 3 HOH D 17 417 78 HOH HOH . 
L 3 HOH D 18 418 82 HOH HOH . 
L 3 HOH D 19 419 90 HOH HOH . 
L 3 HOH D 20 420 91 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O3 A9S . . . F 2 70.604 -71.995 19.448 0.8 52.71 ? O3 A9S 301 B 1 
HETATM 2 C C10 A9S . . . F 2 70.417 -70.777 19.585 0.8 50.83 ? C10 A9S 301 B 1 
HETATM 3 O O1 A9S . . . F 2 70.015 -70.355 20.68 0.8 54.95 ? O1 A9S 301 B 1 
HETATM 4 C C11 A9S . . . F 2 70.652 -69.794 18.497 0.8 50.68 ? C11 A9S 301 B 1 
HETATM 5 C C12 A9S . . . F 2 71.121 -70.074 17.261 0.8 50.89 ? C12 A9S 301 B 1 
HETATM 6 C C15 A9S . . . F 2 71.265 -68.918 16.326 0.8 50.47 ? C15 A9S 301 B 1 
HETATM 7 C C8 A9S . . . F 2 71.437 -71.45 16.834 0.8 55.59 ? C8 A9S 301 B 1 
HETATM 8 C C9 A9S . . . F 2 71.845 -71.778 15.616 0.8 57.56 ? C9 A9S 301 B 1 
HETATM 9 C C5 A9S . . . F 2 72.102 -73.233 15.303 0.8 61.66 ? C5 A9S 301 B 1 
HETATM 10 O O4 A9S . . . F 2 71.742 -74.021 16.44 0.8 60.42 ? O4 A9S 301 B 1 
HETATM 11 C C6 A9S . . . F 2 71.287 -73.726 14.101 0.8 64.19 ? C6 A9S 301 B 1 
HETATM 12 C C14 A9S . . . F 2 69.791 -73.478 14.315 0.8 65.3 ? C14 A9S 301 B 1 
HETATM 13 C C13 A9S . . . F 2 71.474 -75.232 13.871 0.8 64.15 ? C13 A9S 301 B 1 
HETATM 14 C C1 A9S . . . F 2 71.708 -72.963 12.85 0.8 65.98 ? C1 A9S 301 B 1 
HETATM 15 C C4 A9S . . . F 2 73.58 -73.372 15.066 0.8 66.09 ? C4 A9S 301 B 1 
HETATM 16 C C7 A9S . . . F 2 74.49 -73.559 16.25 0.8 64.27 ? C7 A9S 301 B 1 
HETATM 17 C C3 A9S . . . F 2 74.075 -73.31 13.813 0.8 68.29 ? C3 A9S 301 B 1 
HETATM 18 C C2 A9S . . . F 2 73.192 -73.091 12.646 0.8 66.86 ? C2 A9S 301 B 1 
HETATM 19 O O2 A9S . . . F 2 73.654 -73.01 11.519 0.8 72.94 ? O2 A9S 301 B 1 
#
_model_server_stats.io_time_ms              66 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           286 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           19 
#