data_4JDI
#
_model_server_result.job_id            YfEu7_gsRW50Jur4ZoQ8hw 
_model_server_result.datetime_utc      '2024-11-26 11:04:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4jdi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1001}' 
#
_entry.id    4JDI 
#
_exptl.entry_id    4JDI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4JDI 
_cell.length_a            61.912 
_cell.length_b            61.912 
_cell.length_c            181.56 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4JDI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C LYS 228 A LYS 473 1_555 A N SEP 229 A SEP 474 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale2 A C SEP 229 A SEP 474 1_555 A N LEU 230 A LEU 475 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
metalc ? metalc1 A OD2 ASP 213 A ASP 458 1_555 D MG MG . A MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.953 ? 
metalc ? metalc2 A OD1 ASP 213 A ASP 458 1_555 E MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
metalc ? metalc3 A OD2 ASP 213 A ASP 458 1_555 E MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? 
metalc ? metalc4 C O2A ANP . A ANP 1000 1_555 D MG MG . A MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? 
metalc ? metalc5 C O1B ANP . A ANP 1000 1_555 E MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
metalc ? metalc6 D MG MG . A MG 1001 1_555 F O HOH . A HOH 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? 
metalc ? metalc7 D MG MG . A MG 1001 1_555 F O HOH . A HOH 1123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? 
metalc ? metalc8 D MG MG . A MG 1001 1_555 F O HOH . A HOH 1186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? 
metalc ? metalc9 E MG MG . A MG 1002 1_555 F O HOH . A HOH 1232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? 
metalc ? metalc10 E MG MG . A MG 1002 1_555 F O HOH . A HOH 1233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? 
metalc ? metalc11 E MG MG . A MG 1002 1_555 F O HOH . A HOH 1234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4JDI 
_atom_sites.fract_transf_matrix[1][1]    0.016152 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016152 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005508 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 ANP A 1 1000 1000 ANP ANP . 
D 4 MG A 1 1001 1001 MG MG . 
E 4 MG A 1 1002 1002 MG MG . 
F 5 HOH A 1 1101 1 HOH HOH . 
F 5 HOH A 2 1102 2 HOH HOH . 
F 5 HOH A 3 1103 3 HOH HOH . 
F 5 HOH A 4 1104 4 HOH HOH . 
F 5 HOH A 5 1105 5 HOH HOH . 
F 5 HOH A 6 1106 6 HOH HOH . 
F 5 HOH A 7 1107 7 HOH HOH . 
F 5 HOH A 8 1108 8 HOH HOH . 
F 5 HOH A 9 1109 9 HOH HOH . 
F 5 HOH A 10 1110 10 HOH HOH . 
F 5 HOH A 11 1111 11 HOH HOH . 
F 5 HOH A 12 1112 12 HOH HOH . 
F 5 HOH A 13 1113 13 HOH HOH . 
F 5 HOH A 14 1114 14 HOH HOH . 
F 5 HOH A 15 1115 15 HOH HOH . 
F 5 HOH A 16 1116 16 HOH HOH . 
F 5 HOH A 17 1117 17 HOH HOH . 
F 5 HOH A 18 1118 18 HOH HOH . 
F 5 HOH A 19 1119 19 HOH HOH . 
F 5 HOH A 20 1120 20 HOH HOH . 
F 5 HOH A 21 1121 21 HOH HOH . 
F 5 HOH A 22 1122 22 HOH HOH . 
F 5 HOH A 23 1123 23 HOH HOH . 
F 5 HOH A 24 1124 24 HOH HOH . 
F 5 HOH A 25 1125 25 HOH HOH . 
F 5 HOH A 26 1126 26 HOH HOH . 
F 5 HOH A 27 1127 27 HOH HOH . 
F 5 HOH A 28 1128 28 HOH HOH . 
F 5 HOH A 29 1129 29 HOH HOH . 
F 5 HOH A 30 1130 30 HOH HOH . 
F 5 HOH A 31 1131 31 HOH HOH . 
F 5 HOH A 32 1132 32 HOH HOH . 
F 5 HOH A 33 1133 33 HOH HOH . 
F 5 HOH A 34 1134 34 HOH HOH . 
F 5 HOH A 35 1135 35 HOH HOH . 
F 5 HOH A 36 1136 36 HOH HOH . 
F 5 HOH A 37 1137 37 HOH HOH . 
F 5 HOH A 38 1138 38 HOH HOH . 
F 5 HOH A 39 1139 39 HOH HOH . 
F 5 HOH A 40 1140 40 HOH HOH . 
F 5 HOH A 41 1141 41 HOH HOH . 
F 5 HOH A 42 1142 42 HOH HOH . 
F 5 HOH A 43 1143 43 HOH HOH . 
F 5 HOH A 44 1144 44 HOH HOH . 
F 5 HOH A 45 1145 45 HOH HOH . 
F 5 HOH A 46 1146 46 HOH HOH . 
F 5 HOH A 47 1147 47 HOH HOH . 
F 5 HOH A 48 1148 48 HOH HOH . 
F 5 HOH A 49 1149 49 HOH HOH . 
F 5 HOH A 50 1150 50 HOH HOH . 
F 5 HOH A 51 1151 51 HOH HOH . 
F 5 HOH A 52 1152 52 HOH HOH . 
F 5 HOH A 53 1153 53 HOH HOH . 
F 5 HOH A 54 1154 54 HOH HOH . 
F 5 HOH A 55 1155 55 HOH HOH . 
F 5 HOH A 56 1156 56 HOH HOH . 
F 5 HOH A 57 1157 57 HOH HOH . 
F 5 HOH A 58 1158 58 HOH HOH . 
F 5 HOH A 59 1159 59 HOH HOH . 
F 5 HOH A 60 1160 60 HOH HOH . 
F 5 HOH A 61 1161 61 HOH HOH . 
F 5 HOH A 62 1162 62 HOH HOH . 
F 5 HOH A 63 1163 63 HOH HOH . 
F 5 HOH A 64 1164 64 HOH HOH . 
F 5 HOH A 65 1165 65 HOH HOH . 
F 5 HOH A 66 1166 66 HOH HOH . 
F 5 HOH A 67 1167 67 HOH HOH . 
F 5 HOH A 68 1168 68 HOH HOH . 
F 5 HOH A 69 1169 69 HOH HOH . 
F 5 HOH A 70 1170 70 HOH HOH . 
F 5 HOH A 71 1171 71 HOH HOH . 
F 5 HOH A 72 1172 72 HOH HOH . 
F 5 HOH A 73 1173 73 HOH HOH . 
F 5 HOH A 74 1174 74 HOH HOH . 
F 5 HOH A 75 1175 75 HOH HOH . 
F 5 HOH A 76 1176 76 HOH HOH . 
F 5 HOH A 77 1177 77 HOH HOH . 
F 5 HOH A 78 1178 78 HOH HOH . 
F 5 HOH A 79 1179 79 HOH HOH . 
F 5 HOH A 80 1180 80 HOH HOH . 
F 5 HOH A 81 1181 81 HOH HOH . 
F 5 HOH A 82 1182 82 HOH HOH . 
F 5 HOH A 83 1183 83 HOH HOH . 
F 5 HOH A 84 1184 84 HOH HOH . 
F 5 HOH A 85 1185 85 HOH HOH . 
F 5 HOH A 86 1186 86 HOH HOH . 
F 5 HOH A 87 1187 87 HOH HOH . 
F 5 HOH A 88 1188 88 HOH HOH . 
F 5 HOH A 89 1189 89 HOH HOH . 
F 5 HOH A 90 1190 90 HOH HOH . 
F 5 HOH A 91 1191 91 HOH HOH . 
F 5 HOH A 92 1192 92 HOH HOH . 
F 5 HOH A 93 1193 93 HOH HOH . 
F 5 HOH A 94 1194 94 HOH HOH . 
F 5 HOH A 95 1195 95 HOH HOH . 
F 5 HOH A 96 1196 96 HOH HOH . 
F 5 HOH A 97 1197 97 HOH HOH . 
F 5 HOH A 98 1198 98 HOH HOH . 
F 5 HOH A 99 1199 99 HOH HOH . 
F 5 HOH A 100 1200 100 HOH HOH . 
F 5 HOH A 101 1201 101 HOH HOH . 
F 5 HOH A 102 1202 102 HOH HOH . 
F 5 HOH A 103 1203 103 HOH HOH . 
F 5 HOH A 104 1204 104 HOH HOH . 
F 5 HOH A 105 1205 105 HOH HOH . 
F 5 HOH A 106 1206 107 HOH HOH . 
F 5 HOH A 107 1207 108 HOH HOH . 
F 5 HOH A 108 1208 109 HOH HOH . 
F 5 HOH A 109 1209 110 HOH HOH . 
F 5 HOH A 110 1210 111 HOH HOH . 
F 5 HOH A 111 1211 112 HOH HOH . 
F 5 HOH A 112 1212 113 HOH HOH . 
F 5 HOH A 113 1213 115 HOH HOH . 
F 5 HOH A 114 1214 116 HOH HOH . 
F 5 HOH A 115 1215 117 HOH HOH . 
F 5 HOH A 116 1216 118 HOH HOH . 
F 5 HOH A 117 1217 119 HOH HOH . 
F 5 HOH A 118 1218 120 HOH HOH . 
F 5 HOH A 119 1219 121 HOH HOH . 
F 5 HOH A 120 1220 124 HOH HOH . 
F 5 HOH A 121 1221 125 HOH HOH . 
F 5 HOH A 122 1222 126 HOH HOH . 
F 5 HOH A 123 1223 127 HOH HOH . 
F 5 HOH A 124 1224 128 HOH HOH . 
F 5 HOH A 125 1225 130 HOH HOH . 
F 5 HOH A 126 1226 131 HOH HOH . 
F 5 HOH A 127 1227 132 HOH HOH . 
F 5 HOH A 128 1228 133 HOH HOH . 
F 5 HOH A 129 1229 134 HOH HOH . 
F 5 HOH A 130 1230 135 HOH HOH . 
F 5 HOH A 131 1231 136 HOH HOH . 
F 5 HOH A 132 1232 137 HOH HOH . 
F 5 HOH A 133 1233 138 HOH HOH . 
F 5 HOH A 134 1234 139 HOH HOH . 
G 5 HOH B 1 101 106 HOH HOH . 
G 5 HOH B 2 102 114 HOH HOH . 
G 5 HOH B 3 103 122 HOH HOH . 
G 5 HOH B 4 104 123 HOH HOH . 
G 5 HOH B 5 105 129 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               -23.9 
_atom_site.Cartn_y               17.777 
_atom_site.Cartn_z               -9.574 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        40.6 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           1001 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           325 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           1 
#