data_4JDU
#
_model_server_result.job_id            eCcChQBwTKCSsHSPmWWfRQ 
_model_server_result.datetime_utc      '2024-11-05 00:12:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4jdu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":301}' 
#
_entry.id    4JDU 
#
_exptl.entry_id    4JDU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              46.025 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FORMIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4JDU 
_cell.length_a            39.277 
_cell.length_b            49.871 
_cell.length_c            85.451 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4JDU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C VAL 11 A VAL 92 1_555 A N MSE 12 A MSE 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale2 A C MSE 12 A MSE 93 1_555 A N ILE 13 A ILE 94 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.326 ? 
covale ? covale3 A C MSE 12 A MSE 93 1_555 A N ILE 13 A ILE 94 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.329 ? 
covale ? covale4 A C SER 20 A SER 101 1_555 A N MSE 21 A MSE 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale5 A C MSE 21 A MSE 102 1_555 A N LEU 22 A LEU 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale6 A C ALA 34 A ALA 115 1_555 A N MLY 35 A MLY 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale7 A C MLY 35 A MLY 116 1_555 A N ARG 36 A ARG 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale8 A C GLY 44 A GLY 125 1_555 A N MSE 45 A MSE 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale9 A C MSE 45 A MSE 126 1_555 A N GLU 46 A GLU 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale10 A C GLY 51 A GLY 132 1_555 A N MSE 52 A MSE 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale11 A C MSE 52 A MSE 133 1_555 A N ILE 53 A ILE 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale12 A C LYS 73 A LYS 154 1_555 A N MSE 74 A MSE 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale13 A C MSE 74 A MSE 155 1_555 A N PHE 75 A PHE 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale14 A C ALA 176 A ALA 257 1_555 A N MSE 177 A MSE 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale15 A C MSE 177 A MSE 258 1_555 A N CYS 178 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale16 A C LYS 208 A LYS 289 1_555 A N MSE 209 A MSE 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
metalc ? metalc1 A OG SER 18 A SER 99 1_555 C CA CA . A CA 302 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.292 ? 
metalc ? metalc2 A OG SER 20 A SER 101 1_555 C CA CA . A CA 302 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.378 ? 
metalc ? metalc3 A OG1 THR 89 A THR 170 1_555 C CA CA . A CA 302 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.39 ? 
metalc ? metalc4 C CA CA . A CA 302 1_555 D O HOH . A HOH 488 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.466 ? 
metalc ? metalc5 A OD1 ASP 117 A ASP 198 1_555 C CA CA . A CA 302 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.569 ? 
metalc ? metalc6 A OD2 ASP 16 A ASP 97 1_555 C CA CA . A CA 302 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.628 ? 
metalc ? metalc7 C CA CA . A CA 302 1_555 D O HOH . A HOH 533 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.646 ? 
metalc ? metalc8 A OG1 THR 89 A THR 170 1_555 C CA CA . A CA 302 1_555 ? ? ? ? B ? ? ? ? ? ? ? 3.045 ? 
metalc ? metalc9 A OG SER 18 A SER 99 1_555 C CA CA . A CA 302 1_555 ? ? ? ? B ? ? ? ? ? ? ? 3.046 ? 
metalc ? metalc10 A OG SER 20 A SER 101 1_555 C CA CA . A CA 302 1_555 ? ? ? ? B ? ? ? ? ? ? ? 3.147 ? 
#
_chem_comp.formula           'C H2 O2' 
_chem_comp.formula_weight    46.025 
_chem_comp.id                FMT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FORMIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4JDU 
_atom_sites.fract_transf_matrix[1][1]    0.02546 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020052 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011703 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FMT A 1 301 1 FMT FMT . 
C 3 CA A 1 302 1 CA CA . 
D 4 HOH A 1 401 1 HOH HOH . 
D 4 HOH A 2 402 2 HOH HOH . 
D 4 HOH A 3 403 3 HOH HOH . 
D 4 HOH A 4 404 4 HOH HOH . 
D 4 HOH A 5 405 5 HOH HOH . 
D 4 HOH A 6 406 6 HOH HOH . 
D 4 HOH A 7 407 7 HOH HOH . 
D 4 HOH A 8 408 8 HOH HOH . 
D 4 HOH A 9 409 9 HOH HOH . 
D 4 HOH A 10 410 10 HOH HOH . 
D 4 HOH A 11 411 11 HOH HOH . 
D 4 HOH A 12 412 12 HOH HOH . 
D 4 HOH A 13 413 13 HOH HOH . 
D 4 HOH A 14 414 14 HOH HOH . 
D 4 HOH A 15 415 15 HOH HOH . 
D 4 HOH A 16 416 16 HOH HOH . 
D 4 HOH A 17 417 17 HOH HOH . 
D 4 HOH A 18 418 18 HOH HOH . 
D 4 HOH A 19 419 19 HOH HOH . 
D 4 HOH A 20 420 20 HOH HOH . 
D 4 HOH A 21 421 21 HOH HOH . 
D 4 HOH A 22 422 22 HOH HOH . 
D 4 HOH A 23 423 23 HOH HOH . 
D 4 HOH A 24 424 24 HOH HOH . 
D 4 HOH A 25 425 25 HOH HOH . 
D 4 HOH A 26 426 26 HOH HOH . 
D 4 HOH A 27 427 27 HOH HOH . 
D 4 HOH A 28 428 28 HOH HOH . 
D 4 HOH A 29 429 29 HOH HOH . 
D 4 HOH A 30 430 30 HOH HOH . 
D 4 HOH A 31 431 31 HOH HOH . 
D 4 HOH A 32 432 32 HOH HOH . 
D 4 HOH A 33 433 33 HOH HOH . 
D 4 HOH A 34 434 34 HOH HOH . 
D 4 HOH A 35 435 35 HOH HOH . 
D 4 HOH A 36 436 36 HOH HOH . 
D 4 HOH A 37 437 37 HOH HOH . 
D 4 HOH A 38 438 38 HOH HOH . 
D 4 HOH A 39 439 39 HOH HOH . 
D 4 HOH A 40 440 40 HOH HOH . 
D 4 HOH A 41 441 41 HOH HOH . 
D 4 HOH A 42 442 42 HOH HOH . 
D 4 HOH A 43 443 43 HOH HOH . 
D 4 HOH A 44 444 44 HOH HOH . 
D 4 HOH A 45 445 45 HOH HOH . 
D 4 HOH A 46 446 46 HOH HOH . 
D 4 HOH A 47 447 47 HOH HOH . 
D 4 HOH A 48 448 48 HOH HOH . 
D 4 HOH A 49 449 49 HOH HOH . 
D 4 HOH A 50 450 50 HOH HOH . 
D 4 HOH A 51 451 51 HOH HOH . 
D 4 HOH A 52 452 52 HOH HOH . 
D 4 HOH A 53 453 53 HOH HOH . 
D 4 HOH A 54 454 54 HOH HOH . 
D 4 HOH A 55 455 55 HOH HOH . 
D 4 HOH A 56 456 56 HOH HOH . 
D 4 HOH A 57 457 57 HOH HOH . 
D 4 HOH A 58 458 58 HOH HOH . 
D 4 HOH A 59 459 59 HOH HOH . 
D 4 HOH A 60 460 60 HOH HOH . 
D 4 HOH A 61 461 61 HOH HOH . 
D 4 HOH A 62 462 62 HOH HOH . 
D 4 HOH A 63 463 63 HOH HOH . 
D 4 HOH A 64 464 64 HOH HOH . 
D 4 HOH A 65 465 65 HOH HOH . 
D 4 HOH A 66 466 66 HOH HOH . 
D 4 HOH A 67 467 67 HOH HOH . 
D 4 HOH A 68 468 68 HOH HOH . 
D 4 HOH A 69 469 69 HOH HOH . 
D 4 HOH A 70 470 70 HOH HOH . 
D 4 HOH A 71 471 71 HOH HOH . 
D 4 HOH A 72 472 72 HOH HOH . 
D 4 HOH A 73 473 73 HOH HOH . 
D 4 HOH A 74 474 74 HOH HOH . 
D 4 HOH A 75 475 75 HOH HOH . 
D 4 HOH A 76 476 76 HOH HOH . 
D 4 HOH A 77 477 77 HOH HOH . 
D 4 HOH A 78 478 78 HOH HOH . 
D 4 HOH A 79 479 79 HOH HOH . 
D 4 HOH A 80 480 80 HOH HOH . 
D 4 HOH A 81 481 81 HOH HOH . 
D 4 HOH A 82 482 82 HOH HOH . 
D 4 HOH A 83 483 83 HOH HOH . 
D 4 HOH A 84 484 84 HOH HOH . 
D 4 HOH A 85 485 85 HOH HOH . 
D 4 HOH A 86 486 86 HOH HOH . 
D 4 HOH A 87 487 87 HOH HOH . 
D 4 HOH A 88 488 88 HOH HOH . 
D 4 HOH A 89 489 89 HOH HOH . 
D 4 HOH A 90 490 90 HOH HOH . 
D 4 HOH A 91 491 91 HOH HOH . 
D 4 HOH A 92 492 92 HOH HOH . 
D 4 HOH A 93 493 93 HOH HOH . 
D 4 HOH A 94 494 94 HOH HOH . 
D 4 HOH A 95 495 95 HOH HOH . 
D 4 HOH A 96 496 96 HOH HOH . 
D 4 HOH A 97 497 97 HOH HOH . 
D 4 HOH A 98 498 98 HOH HOH . 
D 4 HOH A 99 499 99 HOH HOH . 
D 4 HOH A 100 500 100 HOH HOH . 
D 4 HOH A 101 501 101 HOH HOH . 
D 4 HOH A 102 502 102 HOH HOH . 
D 4 HOH A 103 503 103 HOH HOH . 
D 4 HOH A 104 504 104 HOH HOH . 
D 4 HOH A 105 505 105 HOH HOH . 
D 4 HOH A 106 506 106 HOH HOH . 
D 4 HOH A 107 507 107 HOH HOH . 
D 4 HOH A 108 508 108 HOH HOH . 
D 4 HOH A 109 509 109 HOH HOH . 
D 4 HOH A 110 510 110 HOH HOH . 
D 4 HOH A 111 511 111 HOH HOH . 
D 4 HOH A 112 512 112 HOH HOH . 
D 4 HOH A 113 513 113 HOH HOH . 
D 4 HOH A 114 514 114 HOH HOH . 
D 4 HOH A 115 515 115 HOH HOH . 
D 4 HOH A 116 516 116 HOH HOH . 
D 4 HOH A 117 517 117 HOH HOH . 
D 4 HOH A 118 518 118 HOH HOH . 
D 4 HOH A 119 519 119 HOH HOH . 
D 4 HOH A 120 520 120 HOH HOH . 
D 4 HOH A 121 521 121 HOH HOH . 
D 4 HOH A 122 522 122 HOH HOH . 
D 4 HOH A 123 523 123 HOH HOH . 
D 4 HOH A 124 524 124 HOH HOH . 
D 4 HOH A 125 525 125 HOH HOH . 
D 4 HOH A 126 526 126 HOH HOH . 
D 4 HOH A 127 527 127 HOH HOH . 
D 4 HOH A 128 528 128 HOH HOH . 
D 4 HOH A 129 529 129 HOH HOH . 
D 4 HOH A 130 530 130 HOH HOH . 
D 4 HOH A 131 531 131 HOH HOH . 
D 4 HOH A 132 532 132 HOH HOH . 
D 4 HOH A 133 533 133 HOH HOH . 
D 4 HOH A 134 534 134 HOH HOH . 
D 4 HOH A 135 535 135 HOH HOH . 
D 4 HOH A 136 536 136 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C FMT . . . B 2 1.617 5.594 -9.006 1 44.78 ? C FMT 301 A 1 
HETATM 2 O O1 FMT . . . B 2 2.547 5.477 -9.806 1 51.29 ? O1 FMT 301 A 1 
HETATM 3 O O2 FMT . . . B 2 0.453 5.267 -9.251 1 40.58 ? O2 FMT 301 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           3 
#