data_4JDW # _model_server_result.job_id LivG22mscMbLd3DXLgdX5g _model_server_result.datetime_utc '2024-11-08 09:34:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jdw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":500}' # _entry.id 4JDW # _exptl.entry_id 4JDW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 175.209 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ARGININE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4JDW _cell.length_a 83.78 _cell.length_b 83.78 _cell.length_c 199.45 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JDW _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H15 N4 O2 1' _chem_comp.formula_weight 175.209 _chem_comp.id ARG _chem_comp.mon_nstd_flag y _chem_comp.name ARGININE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA ARG sing 13 n n N H ARG sing 14 n n N H2 ARG sing 15 n n CA C ARG sing 16 n n CA CB ARG sing 17 n n CA HA ARG sing 18 n n C O ARG doub 19 n n C OXT ARG sing 20 n n CB CG ARG sing 21 n n CB HB2 ARG sing 22 n n CB HB3 ARG sing 23 n n CG CD ARG sing 24 n n CG HG2 ARG sing 25 n n CG HG3 ARG sing 26 n n CD NE ARG sing 27 n n CD HD2 ARG sing 28 n n CD HD3 ARG sing 29 n n NE CZ ARG sing 30 n n NE HE ARG sing 31 n n CZ NH1 ARG sing 32 n n CZ NH2 ARG doub 33 n n NH1 HH11 ARG sing 34 n n NH1 HH12 ARG sing 35 n n NH2 HH21 ARG sing 36 n n NH2 HH22 ARG sing 37 n n OXT HXT ARG sing 38 n n # _atom_sites.entry_id 4JDW _atom_sites.fract_transf_matrix[1][1] 0.011936 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011936 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005014 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ARG A 1 500 500 ARG ARG . C 3 HOH A 1 501 1 HOH HOH . C 3 HOH A 2 502 2 HOH HOH . C 3 HOH A 3 503 3 HOH HOH . C 3 HOH A 4 504 4 HOH HOH . C 3 HOH A 5 505 5 HOH HOH . C 3 HOH A 6 506 6 HOH HOH . C 3 HOH A 7 507 7 HOH HOH . C 3 HOH A 8 508 8 HOH HOH . C 3 HOH A 9 509 9 HOH HOH . C 3 HOH A 10 510 10 HOH HOH . C 3 HOH A 11 511 11 HOH HOH . C 3 HOH A 12 512 12 HOH HOH . C 3 HOH A 13 513 13 HOH HOH . C 3 HOH A 14 514 14 HOH HOH . C 3 HOH A 15 515 15 HOH HOH . C 3 HOH A 16 516 16 HOH HOH . C 3 HOH A 17 517 17 HOH HOH . C 3 HOH A 18 518 18 HOH HOH . C 3 HOH A 19 519 19 HOH HOH . C 3 HOH A 20 520 20 HOH HOH . C 3 HOH A 21 521 21 HOH HOH . C 3 HOH A 22 522 22 HOH HOH . C 3 HOH A 23 523 23 HOH HOH . C 3 HOH A 24 524 24 HOH HOH . C 3 HOH A 25 525 25 HOH HOH . C 3 HOH A 26 526 26 HOH HOH . C 3 HOH A 27 527 27 HOH HOH . C 3 HOH A 28 528 28 HOH HOH . C 3 HOH A 29 529 29 HOH HOH . C 3 HOH A 30 530 30 HOH HOH . C 3 HOH A 31 531 31 HOH HOH . C 3 HOH A 32 532 32 HOH HOH . C 3 HOH A 33 533 33 HOH HOH . C 3 HOH A 34 534 34 HOH HOH . C 3 HOH A 35 535 35 HOH HOH . C 3 HOH A 36 536 36 HOH HOH . C 3 HOH A 37 537 37 HOH HOH . C 3 HOH A 38 538 38 HOH HOH . C 3 HOH A 39 539 39 HOH HOH . C 3 HOH A 40 540 40 HOH HOH . C 3 HOH A 41 541 41 HOH HOH . C 3 HOH A 42 542 42 HOH HOH . C 3 HOH A 43 543 43 HOH HOH . C 3 HOH A 44 544 44 HOH HOH . C 3 HOH A 45 545 45 HOH HOH . C 3 HOH A 46 546 46 HOH HOH . C 3 HOH A 47 547 47 HOH HOH . C 3 HOH A 48 548 48 HOH HOH . C 3 HOH A 49 549 49 HOH HOH . C 3 HOH A 50 550 51 HOH HOH . C 3 HOH A 51 551 52 HOH HOH . C 3 HOH A 52 552 53 HOH HOH . C 3 HOH A 53 553 54 HOH HOH . C 3 HOH A 54 554 55 HOH HOH . C 3 HOH A 55 555 56 HOH HOH . C 3 HOH A 56 556 57 HOH HOH . C 3 HOH A 57 557 58 HOH HOH . C 3 HOH A 58 558 59 HOH HOH . C 3 HOH A 59 559 60 HOH HOH . C 3 HOH A 60 560 61 HOH HOH . C 3 HOH A 61 561 62 HOH HOH . C 3 HOH A 62 562 63 HOH HOH . C 3 HOH A 63 563 64 HOH HOH . C 3 HOH A 64 564 65 HOH HOH . C 3 HOH A 65 565 66 HOH HOH . C 3 HOH A 66 566 67 HOH HOH . C 3 HOH A 67 567 68 HOH HOH . C 3 HOH A 68 568 69 HOH HOH . C 3 HOH A 69 569 70 HOH HOH . C 3 HOH A 70 570 71 HOH HOH . C 3 HOH A 71 571 72 HOH HOH . C 3 HOH A 72 572 73 HOH HOH . C 3 HOH A 73 573 74 HOH HOH . C 3 HOH A 74 574 75 HOH HOH . C 3 HOH A 75 575 76 HOH HOH . C 3 HOH A 76 576 77 HOH HOH . C 3 HOH A 77 577 78 HOH HOH . C 3 HOH A 78 578 79 HOH HOH . C 3 HOH A 79 579 80 HOH HOH . C 3 HOH A 80 580 81 HOH HOH . C 3 HOH A 81 581 82 HOH HOH . C 3 HOH A 82 582 83 HOH HOH . C 3 HOH A 83 583 84 HOH HOH . C 3 HOH A 84 584 85 HOH HOH . C 3 HOH A 85 585 86 HOH HOH . C 3 HOH A 86 586 87 HOH HOH . C 3 HOH A 87 587 88 HOH HOH . C 3 HOH A 88 588 89 HOH HOH . C 3 HOH A 89 589 90 HOH HOH . C 3 HOH A 90 590 91 HOH HOH . C 3 HOH A 91 591 92 HOH HOH . C 3 HOH A 92 592 93 HOH HOH . C 3 HOH A 93 593 95 HOH HOH . C 3 HOH A 94 594 97 HOH HOH . C 3 HOH A 95 595 98 HOH HOH . C 3 HOH A 96 596 99 HOH HOH . C 3 HOH A 97 597 100 HOH HOH . C 3 HOH A 98 598 101 HOH HOH . C 3 HOH A 99 599 102 HOH HOH . C 3 HOH A 100 600 103 HOH HOH . C 3 HOH A 101 601 104 HOH HOH . C 3 HOH A 102 602 105 HOH HOH . C 3 HOH A 103 603 106 HOH HOH . C 3 HOH A 104 604 107 HOH HOH . C 3 HOH A 105 605 108 HOH HOH . C 3 HOH A 106 606 109 HOH HOH . C 3 HOH A 107 607 110 HOH HOH . C 3 HOH A 108 608 111 HOH HOH . C 3 HOH A 109 609 112 HOH HOH . C 3 HOH A 110 610 113 HOH HOH . C 3 HOH A 111 611 114 HOH HOH . C 3 HOH A 112 612 115 HOH HOH . C 3 HOH A 113 613 116 HOH HOH . C 3 HOH A 114 614 117 HOH HOH . C 3 HOH A 115 615 118 HOH HOH . C 3 HOH A 116 616 119 HOH HOH . C 3 HOH A 117 617 120 HOH HOH . C 3 HOH A 118 618 121 HOH HOH . C 3 HOH A 119 619 122 HOH HOH . C 3 HOH A 120 620 123 HOH HOH . C 3 HOH A 121 621 124 HOH HOH . C 3 HOH A 122 622 125 HOH HOH . C 3 HOH A 123 623 126 HOH HOH . C 3 HOH A 124 624 127 HOH HOH . C 3 HOH A 125 625 130 HOH HOH . C 3 HOH A 126 626 131 HOH HOH . C 3 HOH A 127 627 132 HOH HOH . C 3 HOH A 128 628 134 HOH HOH . C 3 HOH A 129 629 135 HOH HOH . C 3 HOH A 130 630 136 HOH HOH . C 3 HOH A 131 631 137 HOH HOH . C 3 HOH A 132 632 138 HOH HOH . C 3 HOH A 133 633 139 HOH HOH . C 3 HOH A 134 634 140 HOH HOH . C 3 HOH A 135 635 141 HOH HOH . C 3 HOH A 136 636 142 HOH HOH . C 3 HOH A 137 637 143 HOH HOH . C 3 HOH A 138 638 144 HOH HOH . C 3 HOH A 139 639 146 HOH HOH . C 3 HOH A 140 640 147 HOH HOH . C 3 HOH A 141 641 148 HOH HOH . C 3 HOH A 142 642 150 HOH HOH . C 3 HOH A 143 643 151 HOH HOH . C 3 HOH A 144 644 152 HOH HOH . C 3 HOH A 145 645 153 HOH HOH . C 3 HOH A 146 646 154 HOH HOH . C 3 HOH A 147 647 156 HOH HOH . C 3 HOH A 148 648 157 HOH HOH . C 3 HOH A 149 649 158 HOH HOH . C 3 HOH A 150 650 159 HOH HOH . C 3 HOH A 151 651 160 HOH HOH . C 3 HOH A 152 652 161 HOH HOH . C 3 HOH A 153 653 164 HOH HOH . C 3 HOH A 154 654 165 HOH HOH . C 3 HOH A 155 655 166 HOH HOH . C 3 HOH A 156 656 167 HOH HOH . C 3 HOH A 157 657 168 HOH HOH . C 3 HOH A 158 658 169 HOH HOH . C 3 HOH A 159 659 170 HOH HOH . C 3 HOH A 160 660 172 HOH HOH . C 3 HOH A 161 661 173 HOH HOH . C 3 HOH A 162 662 174 HOH HOH . C 3 HOH A 163 663 175 HOH HOH . C 3 HOH A 164 664 176 HOH HOH . C 3 HOH A 165 665 177 HOH HOH . C 3 HOH A 166 666 179 HOH HOH . C 3 HOH A 167 667 182 HOH HOH . C 3 HOH A 168 668 183 HOH HOH . C 3 HOH A 169 669 184 HOH HOH . C 3 HOH A 170 670 185 HOH HOH . C 3 HOH A 171 671 186 HOH HOH . C 3 HOH A 172 672 187 HOH HOH . C 3 HOH A 173 673 190 HOH HOH . C 3 HOH A 174 674 191 HOH HOH . C 3 HOH A 175 675 192 HOH HOH . C 3 HOH A 176 676 193 HOH HOH . C 3 HOH A 177 677 196 HOH HOH . C 3 HOH A 178 678 197 HOH HOH . C 3 HOH A 179 679 198 HOH HOH . C 3 HOH A 180 680 200 HOH HOH . C 3 HOH A 181 681 202 HOH HOH . C 3 HOH A 182 682 205 HOH HOH . C 3 HOH A 183 683 206 HOH HOH . C 3 HOH A 184 684 208 HOH HOH . C 3 HOH A 185 685 209 HOH HOH . C 3 HOH A 186 686 210 HOH HOH . C 3 HOH A 187 687 211 HOH HOH . C 3 HOH A 188 688 213 HOH HOH . C 3 HOH A 189 689 215 HOH HOH . C 3 HOH A 190 690 216 HOH HOH . C 3 HOH A 191 691 217 HOH HOH . C 3 HOH A 192 692 218 HOH HOH . C 3 HOH A 193 693 220 HOH HOH . C 3 HOH A 194 694 221 HOH HOH . C 3 HOH A 195 695 224 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N ARG . . . B 2 45.087 72.846 15.036 1 16.71 ? N ARG 500 A 1 HETATM 2 C CA ARG . . . B 2 44.507 72.469 16.364 1 15.72 ? CA ARG 500 A 1 HETATM 3 C C ARG . . . B 2 44.063 73.692 17.142 1 16.14 ? C ARG 500 A 1 HETATM 4 O O ARG . . . B 2 44.625 74.79 16.958 1 17.19 ? O ARG 500 A 1 HETATM 5 C CB ARG . . . B 2 45.505 71.665 17.198 1 13.18 ? CB ARG 500 A 1 HETATM 6 C CG ARG . . . B 2 45.421 70.178 16.967 1 12.94 ? CG ARG 500 A 1 HETATM 7 C CD ARG . . . B 2 46.637 69.505 17.503 1 11.22 ? CD ARG 500 A 1 HETATM 8 N NE ARG . . . B 2 46.677 68.1 17.121 1 14.15 ? NE ARG 500 A 1 HETATM 9 C CZ ARG . . . B 2 47.75 67.476 16.65 1 12.87 ? CZ ARG 500 A 1 HETATM 10 N NH1 ARG . . . B 2 48.886 68.129 16.484 1 7.99 ? NH1 ARG 500 A 1 HETATM 11 N NH2 ARG . . . B 2 47.691 66.183 16.396 1 13.06 ? NH2 ARG 500 A 1 HETATM 12 O OXT ARG . . . B 2 43.109 73.539 17.907 1 18.46 ? OXT ARG 500 A 1 HETATM 13 H H1 ARG . . . B 2 44.485 73.57 14.585 1 0 ? H1 ARG 500 A 1 HETATM 14 H H2 ARG . . . B 2 45.973 73.369 15.218 1 0 ? H2 ARG 500 A 1 HETATM 15 H H3 ARG . . . B 2 45.24 72.074 14.367 1 0 ? H3 ARG 500 A 1 HETATM 16 H HE ARG . . . B 2 45.851 67.602 17.244 1 0 ? HE ARG 500 A 1 HETATM 17 H HH11 ARG . . . B 2 48.996 69.1 16.68 1 0 ? HH11 ARG 500 A 1 HETATM 18 H HH12 ARG . . . B 2 49.662 67.599 16.14 1 0 ? HH12 ARG 500 A 1 HETATM 19 H HH21 ARG . . . B 2 46.81 65.735 16.549 1 0 ? HH21 ARG 500 A 1 HETATM 20 H HH22 ARG . . . B 2 48.47 65.667 16.047 1 0 ? HH22 ARG 500 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 222 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #