data_4JFW # _model_server_result.job_id 7_QOpcsp6NfIzOj-QujlAw _model_server_result.datetime_utc '2024-11-20 01:39:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jfw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":501}' # _entry.id 4JFW # _exptl.entry_id 4JFW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 386.309 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3alpha)-[3-({2-[(2S,3S,4R,5S)-3,4-dihydroxy-5-methylpyrrolidin-2-yl]ethyl}amino)propyl]ferrocene _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.09 _cell.angle_gamma 90 _cell.entry_id 4JFW _cell.length_a 56.507 _cell.length_b 189.982 _cell.length_c 97.54 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JFW _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,T 1 1 B,H,I,J,K,U 2 1 C,L,M,N,O,V 3 1 D,P,Q,R,S,W 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 H N N ? 2 L N N ? 2 P N N # _chem_comp.formula 'C20 H30 Fe N2 O2' _chem_comp.formula_weight 386.309 _chem_comp.id H58 _chem_comp.mon_nstd_flag . _chem_comp.name (3alpha)-[3-({2-[(2S,3S,4R,5S)-3,4-dihydroxy-5-methylpyrrolidin-2-yl]ethyl}amino)propyl]ferrocene _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (2S,3S,4R,5S)-2-[N-(propylferrocene)]aminoethyl-5-methylpyrrolidine-3,4-diol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAP CAC H58 sing 129 n n OAP H1 H58 sing 130 n n CAC CAD H58 sing 131 n n CAC CAB H58 sing 132 n n CAC H2 H58 sing 133 n n CAB H3 H58 sing 134 n n CAO CAB H58 sing 135 n n CAO H4 H58 sing 136 n n CAO H5 H58 sing 137 n n CAO H6 H58 sing 138 n n NAA CAB H58 sing 139 n n NAA H7 H58 sing 140 n n CAE NAA H58 sing 141 n n CAE CAF H58 sing 142 n n CAE H9 H58 sing 143 n n CAD CAE H58 sing 144 n n CAD H10 H58 sing 145 n n OAQ CAD H58 sing 146 n n OAQ H11 H58 sing 147 n n CAF H12 H58 sing 148 n n CAF H13 H58 sing 149 n n CAG CAF H58 sing 150 n n CAG NAH H58 sing 151 n n CAG H14 H58 sing 152 n n CAG H15 H58 sing 153 n n NAH CAP H58 sing 154 n n NAH H16 H58 sing 155 n n CAN CAQ H58 sing 156 n n CAN CAJ H58 sing 157 n n CAN H18 H58 sing 158 n n CAQ H19 H58 sing 159 n n CAP CAQ H58 sing 160 n n CAP H20 H58 sing 161 n n CAP H21 H58 sing 162 n n CAJ CAK H58 doub 163 n n CAK CAL H58 sing 164 n n CAK H22 H58 sing 165 n n CAL H23 H58 sing 166 n n CAM CAL H58 sing 167 n n CAM H24 H58 sing 168 n n CAI CAJ H58 sing 169 n n CAI CAM H58 doub 170 n n CAI H25 H58 sing 171 n n CBJ CBI H58 doub 172 n n CBJ H26 H58 sing 173 n n CBI H27 H58 sing 174 n n CBM CBI H58 sing 175 n n CBM H28 H58 sing 176 n n CBL CBM H58 doub 177 n n CBL H29 H58 sing 178 n n CBK CBL H58 sing 179 n n CBK CBJ H58 sing 180 n n CBK H30 H58 sing 181 n n FE CAL H58 sing 182 n n FE CBK H58 sing 183 n n CAN H291 H58 sing 184 n n CAQ H301 H58 sing 185 n n # _atom_sites.entry_id 4JFW _atom_sites.fract_transf_matrix[1][1] 0.017697 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001265 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005264 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010278 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 H58 A 1 501 3 H58 H58 . F 3 SO4 A 1 502 5 SO4 SO4 . G 4 IMD A 1 503 1 IMD IMD . H 2 H58 B 1 501 1 H58 H58 . I 3 SO4 B 1 502 3 SO4 SO4 . J 3 SO4 B 1 503 4 SO4 SO4 . K 4 IMD B 1 504 3 IMD IMD . L 2 H58 C 1 501 4 H58 H58 . M 3 SO4 C 1 502 1 SO4 SO4 . N 3 SO4 C 1 503 7 SO4 SO4 . O 4 IMD C 1 504 4 IMD IMD . P 2 H58 D 1 501 2 H58 H58 . Q 3 SO4 D 1 502 2 SO4 SO4 . R 3 SO4 D 1 503 6 SO4 SO4 . S 4 IMD D 1 504 2 IMD IMD . T 5 HOH A 1 601 1 HOH HOH . T 5 HOH A 2 602 3 HOH HOH . T 5 HOH A 3 603 8 HOH HOH . T 5 HOH A 4 604 11 HOH HOH . T 5 HOH A 5 605 15 HOH HOH . T 5 HOH A 6 606 16 HOH HOH . T 5 HOH A 7 607 20 HOH HOH . T 5 HOH A 8 608 21 HOH HOH . T 5 HOH A 9 609 24 HOH HOH . T 5 HOH A 10 610 26 HOH HOH . T 5 HOH A 11 611 29 HOH HOH . T 5 HOH A 12 612 30 HOH HOH . T 5 HOH A 13 613 31 HOH HOH . T 5 HOH A 14 614 33 HOH HOH . T 5 HOH A 15 615 38 HOH HOH . T 5 HOH A 16 616 41 HOH HOH . T 5 HOH A 17 617 43 HOH HOH . T 5 HOH A 18 618 44 HOH HOH . T 5 HOH A 19 619 48 HOH HOH . T 5 HOH A 20 620 59 HOH HOH . T 5 HOH A 21 621 60 HOH HOH . T 5 HOH A 22 622 61 HOH HOH . T 5 HOH A 23 623 70 HOH HOH . T 5 HOH A 24 624 71 HOH HOH . T 5 HOH A 25 625 73 HOH HOH . T 5 HOH A 26 626 76 HOH HOH . T 5 HOH A 27 627 78 HOH HOH . T 5 HOH A 28 628 82 HOH HOH . T 5 HOH A 29 629 83 HOH HOH . T 5 HOH A 30 630 88 HOH HOH . T 5 HOH A 31 631 89 HOH HOH . T 5 HOH A 32 632 90 HOH HOH . T 5 HOH A 33 633 93 HOH HOH . T 5 HOH A 34 634 100 HOH HOH . T 5 HOH A 35 635 101 HOH HOH . T 5 HOH A 36 636 102 HOH HOH . T 5 HOH A 37 637 103 HOH HOH . T 5 HOH A 38 638 109 HOH HOH . T 5 HOH A 39 639 110 HOH HOH . T 5 HOH A 40 640 111 HOH HOH . T 5 HOH A 41 641 112 HOH HOH . T 5 HOH A 42 642 113 HOH HOH . T 5 HOH A 43 643 114 HOH HOH . T 5 HOH A 44 644 115 HOH HOH . T 5 HOH A 45 645 116 HOH HOH . T 5 HOH A 46 646 117 HOH HOH . T 5 HOH A 47 647 118 HOH HOH . T 5 HOH A 48 648 119 HOH HOH . T 5 HOH A 49 649 120 HOH HOH . T 5 HOH A 50 650 121 HOH HOH . T 5 HOH A 51 651 150 HOH HOH . T 5 HOH A 52 652 154 HOH HOH . T 5 HOH A 53 653 156 HOH HOH . T 5 HOH A 54 654 159 HOH HOH . T 5 HOH A 55 655 161 HOH HOH . T 5 HOH A 56 656 167 HOH HOH . T 5 HOH A 57 657 169 HOH HOH . T 5 HOH A 58 658 170 HOH HOH . T 5 HOH A 59 659 171 HOH HOH . T 5 HOH A 60 660 172 HOH HOH . T 5 HOH A 61 661 176 HOH HOH . T 5 HOH A 62 662 177 HOH HOH . T 5 HOH A 63 663 178 HOH HOH . T 5 HOH A 64 664 181 HOH HOH . T 5 HOH A 65 665 182 HOH HOH . T 5 HOH A 66 666 184 HOH HOH . T 5 HOH A 67 667 190 HOH HOH . T 5 HOH A 68 668 196 HOH HOH . T 5 HOH A 69 669 203 HOH HOH . T 5 HOH A 70 670 207 HOH HOH . T 5 HOH A 71 671 209 HOH HOH . T 5 HOH A 72 672 213 HOH HOH . T 5 HOH A 73 673 214 HOH HOH . T 5 HOH A 74 674 215 HOH HOH . U 5 HOH B 1 601 5 HOH HOH . U 5 HOH B 2 602 6 HOH HOH . U 5 HOH B 3 603 9 HOH HOH . U 5 HOH B 4 604 10 HOH HOH . U 5 HOH B 5 605 12 HOH HOH . U 5 HOH B 6 606 13 HOH HOH . U 5 HOH B 7 607 18 HOH HOH . U 5 HOH B 8 608 22 HOH HOH . U 5 HOH B 9 609 23 HOH HOH . U 5 HOH B 10 610 28 HOH HOH . U 5 HOH B 11 611 34 HOH HOH . U 5 HOH B 12 612 35 HOH HOH . U 5 HOH B 13 613 37 HOH HOH . U 5 HOH B 14 614 39 HOH HOH . U 5 HOH B 15 615 40 HOH HOH . U 5 HOH B 16 616 47 HOH HOH . U 5 HOH B 17 617 49 HOH HOH . U 5 HOH B 18 618 50 HOH HOH . U 5 HOH B 19 619 53 HOH HOH . U 5 HOH B 20 620 54 HOH HOH . U 5 HOH B 21 621 56 HOH HOH . U 5 HOH B 22 622 63 HOH HOH . U 5 HOH B 23 623 64 HOH HOH . U 5 HOH B 24 624 68 HOH HOH . U 5 HOH B 25 625 74 HOH HOH . U 5 HOH B 26 626 80 HOH HOH . U 5 HOH B 27 627 81 HOH HOH . U 5 HOH B 28 628 86 HOH HOH . U 5 HOH B 29 629 92 HOH HOH . U 5 HOH B 30 630 94 HOH HOH . U 5 HOH B 31 631 95 HOH HOH . U 5 HOH B 32 632 96 HOH HOH . U 5 HOH B 33 633 97 HOH HOH . U 5 HOH B 34 634 98 HOH HOH . U 5 HOH B 35 635 99 HOH HOH . U 5 HOH B 36 636 106 HOH HOH . U 5 HOH B 37 637 107 HOH HOH . U 5 HOH B 38 638 108 HOH HOH . U 5 HOH B 39 639 122 HOH HOH . U 5 HOH B 40 640 123 HOH HOH . U 5 HOH B 41 641 124 HOH HOH . U 5 HOH B 42 642 125 HOH HOH . U 5 HOH B 43 643 126 HOH HOH . U 5 HOH B 44 644 127 HOH HOH . U 5 HOH B 45 645 128 HOH HOH . U 5 HOH B 46 646 129 HOH HOH . U 5 HOH B 47 647 152 HOH HOH . U 5 HOH B 48 648 155 HOH HOH . U 5 HOH B 49 649 157 HOH HOH . U 5 HOH B 50 650 158 HOH HOH . U 5 HOH B 51 651 162 HOH HOH . U 5 HOH B 52 652 163 HOH HOH . U 5 HOH B 53 653 185 HOH HOH . U 5 HOH B 54 654 186 HOH HOH . U 5 HOH B 55 655 199 HOH HOH . U 5 HOH B 56 656 201 HOH HOH . U 5 HOH B 57 657 206 HOH HOH . U 5 HOH B 58 658 210 HOH HOH . V 5 HOH C 1 601 2 HOH HOH . V 5 HOH C 2 602 14 HOH HOH . V 5 HOH C 3 603 25 HOH HOH . V 5 HOH C 4 604 27 HOH HOH . V 5 HOH C 5 605 32 HOH HOH . V 5 HOH C 6 606 45 HOH HOH . V 5 HOH C 7 607 46 HOH HOH . V 5 HOH C 8 608 51 HOH HOH . V 5 HOH C 9 609 52 HOH HOH . V 5 HOH C 10 610 57 HOH HOH . V 5 HOH C 11 611 58 HOH HOH . V 5 HOH C 12 612 62 HOH HOH . V 5 HOH C 13 613 65 HOH HOH . V 5 HOH C 14 614 66 HOH HOH . V 5 HOH C 15 615 67 HOH HOH . V 5 HOH C 16 616 72 HOH HOH . V 5 HOH C 17 617 75 HOH HOH . V 5 HOH C 18 618 77 HOH HOH . V 5 HOH C 19 619 79 HOH HOH . V 5 HOH C 20 620 87 HOH HOH . V 5 HOH C 21 621 104 HOH HOH . V 5 HOH C 22 622 105 HOH HOH . V 5 HOH C 23 623 130 HOH HOH . V 5 HOH C 24 624 131 HOH HOH . V 5 HOH C 25 625 147 HOH HOH . V 5 HOH C 26 626 148 HOH HOH . V 5 HOH C 27 627 149 HOH HOH . V 5 HOH C 28 628 160 HOH HOH . V 5 HOH C 29 629 165 HOH HOH . V 5 HOH C 30 630 166 HOH HOH . V 5 HOH C 31 631 175 HOH HOH . V 5 HOH C 32 632 183 HOH HOH . V 5 HOH C 33 633 189 HOH HOH . V 5 HOH C 34 634 195 HOH HOH . V 5 HOH C 35 635 197 HOH HOH . V 5 HOH C 36 636 200 HOH HOH . V 5 HOH C 37 637 202 HOH HOH . V 5 HOH C 38 638 212 HOH HOH . W 5 HOH D 1 601 4 HOH HOH . W 5 HOH D 2 602 7 HOH HOH . W 5 HOH D 3 603 17 HOH HOH . W 5 HOH D 4 604 19 HOH HOH . W 5 HOH D 5 605 36 HOH HOH . W 5 HOH D 6 606 42 HOH HOH . W 5 HOH D 7 607 55 HOH HOH . W 5 HOH D 8 608 69 HOH HOH . W 5 HOH D 9 609 84 HOH HOH . W 5 HOH D 10 610 85 HOH HOH . W 5 HOH D 11 611 91 HOH HOH . W 5 HOH D 12 612 132 HOH HOH . W 5 HOH D 13 613 133 HOH HOH . W 5 HOH D 14 614 134 HOH HOH . W 5 HOH D 15 615 135 HOH HOH . W 5 HOH D 16 616 136 HOH HOH . W 5 HOH D 17 617 137 HOH HOH . W 5 HOH D 18 618 138 HOH HOH . W 5 HOH D 19 619 139 HOH HOH . W 5 HOH D 20 620 140 HOH HOH . W 5 HOH D 21 621 141 HOH HOH . W 5 HOH D 22 622 142 HOH HOH . W 5 HOH D 23 623 143 HOH HOH . W 5 HOH D 24 624 144 HOH HOH . W 5 HOH D 25 625 145 HOH HOH . W 5 HOH D 26 626 146 HOH HOH . W 5 HOH D 27 627 151 HOH HOH . W 5 HOH D 28 628 153 HOH HOH . W 5 HOH D 29 629 164 HOH HOH . W 5 HOH D 30 630 168 HOH HOH . W 5 HOH D 31 631 173 HOH HOH . W 5 HOH D 32 632 174 HOH HOH . W 5 HOH D 33 633 179 HOH HOH . W 5 HOH D 34 634 180 HOH HOH . W 5 HOH D 35 635 187 HOH HOH . W 5 HOH D 36 636 188 HOH HOH . W 5 HOH D 37 637 191 HOH HOH . W 5 HOH D 38 638 192 HOH HOH . W 5 HOH D 39 639 193 HOH HOH . W 5 HOH D 40 640 194 HOH HOH . W 5 HOH D 41 641 198 HOH HOH . W 5 HOH D 42 642 204 HOH HOH . W 5 HOH D 43 643 205 HOH HOH . W 5 HOH D 44 644 208 HOH HOH . W 5 HOH D 45 645 211 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAP H58 . . . L 2 20.437 -8.34 -37.441 1 35.54 ? OAP H58 501 C 1 HETATM 2 C CAC H58 . . . L 2 20.938 -8.395 -38.766 1 44.67 ? CAC H58 501 C 1 HETATM 3 C CAB H58 . . . L 2 19.771 -8.333 -39.721 1 43.84 ? CAB H58 501 C 1 HETATM 4 C CAO H58 . . . L 2 18.828 -7.174 -39.479 1 48.28 ? CAO H58 501 C 1 HETATM 5 N NAA H58 . . . L 2 19.098 -9.62 -39.477 1 48.41 ? NAA H58 501 C 1 HETATM 6 C CAE H58 . . . L 2 20.148 -10.61 -39.15 1 53.11 ? CAE H58 501 C 1 HETATM 7 C CAD H58 . . . L 2 21.445 -9.774 -39.167 1 46.45 ? CAD H58 501 C 1 HETATM 8 O OAQ H58 . . . L 2 22.432 -10.229 -38.25 1 44.29 ? OAQ H58 501 C 1 HETATM 9 C CAF H58 . . . L 2 20.027 -11.888 -39.977 1 62.65 ? CAF H58 501 C 1 HETATM 10 C CAG H58 . . . L 2 21.263 -12.459 -40.668 1 67.91 ? CAG H58 501 C 1 HETATM 11 N NAH H58 . . . L 2 20.887 -13.478 -41.684 1 79.72 ? NAH H58 501 C 1 HETATM 12 C CAN H58 . . . L 2 19.626 -16.913 -42.34 1 108.27 ? CAN H58 501 C 1 HETATM 13 C CAQ H58 . . . L 2 20.538 -15.913 -41.627 1 98.51 ? CAQ H58 501 C 1 HETATM 14 C CAP H58 . . . L 2 19.951 -14.567 -41.295 1 85.81 ? CAP H58 501 C 1 HETATM 15 C CAJ H58 . . . L 2 20.008 -18.368 -42.287 1 117.52 ? CAJ H58 501 C 1 HETATM 16 C CAK H58 . . . L 2 20.207 -19.232 -43.393 1 115.06 ? CAK H58 501 C 1 HETATM 17 C CAL H58 . . . L 2 20.5 -20.52 -42.907 1 114.58 ? CAL H58 501 C 1 HETATM 18 C CAM H58 . . . L 2 20.486 -20.472 -41.513 1 114.66 ? CAM H58 501 C 1 HETATM 19 C CAI H58 . . . L 2 20.182 -19.154 -41.122 1 116.51 ? CAI H58 501 C 1 HETATM 20 C CBJ H58 . . . L 2 23.353 -17.912 -42.967 1 109.41 ? CBJ H58 501 C 1 HETATM 21 C CBI H58 . . . L 2 23.645 -19.218 -43.346 1 108.18 ? CBI H58 501 C 1 HETATM 22 C CBM H58 . . . L 2 23.807 -19.985 -42.18 1 111.92 ? CBM H58 501 C 1 HETATM 23 C CBL H58 . . . L 2 23.614 -19.151 -41.083 1 107.52 ? CBL H58 501 C 1 HETATM 24 C CBK H58 . . . L 2 23.334 -17.865 -41.566 1 116.56 ? CBK H58 501 C 1 HETATM 25 FE FE H58 . . . L 2 21.916 -19.188 -42.238 1 119.83 ? FE H58 501 C 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 110 _model_server_stats.query_time_ms 425 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 25 #