data_4JG6 # _model_server_result.job_id 0FQyuZSEexg7DYWSyMik8Q _model_server_result.datetime_utc '2025-04-25 08:03:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jg6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":801}' # _entry.id 4JG6 # _exptl.entry_id 4JG6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 214.223 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S)-2-cyano-3-(1H-indazol-5-yl)propanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4JG6 _cell.length_a 47.28 _cell.length_b 47.28 _cell.length_c 291.97 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JG6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 51 A CYS 436 1_555 B C07 1LB . A 1LB 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.83 ? metalc ? metalc1 A O GLY 86 A GLY 471 1_555 C NA NA . A NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? metalc ? metalc2 A O HIS 88 A HIS 473 1_555 C NA NA . A NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc3 A O ILE 91 A ILE 476 1_555 C NA NA . A NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc4 A OG1 THR 93 A THR 478 1_555 C NA NA . A NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc5 C NA NA . A NA 802 1_555 D O HOH . A HOH 929 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? # _chem_comp.formula 'C11 H10 N4 O' _chem_comp.formula_weight 214.223 _chem_comp.id 1LB _chem_comp.mon_nstd_flag . _chem_comp.name (2S)-2-cyano-3-(1H-indazol-5-yl)propanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N05 C04 1LB sing 1 n n C10 C09 1LB doub 2 n y C10 C11 1LB sing 3 n y C04 O06 1LB doub 4 n n C04 C01 1LB sing 5 n n C09 C08 1LB sing 6 n y C11 N12 1LB sing 7 n y C11 C15 1LB doub 8 n y N12 N13 1LB sing 9 n y C01 C07 1LB sing 10 n n C01 C02 1LB sing 11 n n C08 C07 1LB sing 12 n n C08 C16 1LB doub 13 n y C15 C16 1LB sing 14 n y C15 C14 1LB sing 15 n y N13 C14 1LB doub 16 n y C02 N03 1LB trip 17 n n C01 H011 1LB sing 18 n n N05 H051 1LB sing 19 n n N05 H052 1LB sing 20 n n C07 H071 1LB sing 21 n n C07 H072 1LB sing 22 n n C09 H091 1LB sing 23 n n C10 H101 1LB sing 24 n n N12 H121 1LB sing 25 n n C14 H141 1LB sing 26 n n C16 H161 1LB sing 27 n n # _atom_sites.entry_id 4JG6 _atom_sites.fract_transf_matrix[1][1] 0.021151 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021151 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003425 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 1LB A 1 801 801 1LB 1LB . C 3 NA A 1 802 1 NA NA . D 4 HOH A 1 901 901 HOH HOH . D 4 HOH A 2 902 903 HOH HOH . D 4 HOH A 3 903 905 HOH HOH . D 4 HOH A 4 904 907 HOH HOH . D 4 HOH A 5 905 908 HOH HOH . D 4 HOH A 6 906 910 HOH HOH . D 4 HOH A 7 907 911 HOH HOH . D 4 HOH A 8 908 912 HOH HOH . D 4 HOH A 9 909 913 HOH HOH . D 4 HOH A 10 910 914 HOH HOH . D 4 HOH A 11 911 915 HOH HOH . D 4 HOH A 12 912 916 HOH HOH . D 4 HOH A 13 913 917 HOH HOH . D 4 HOH A 14 914 918 HOH HOH . D 4 HOH A 15 915 919 HOH HOH . D 4 HOH A 16 916 920 HOH HOH . D 4 HOH A 17 917 922 HOH HOH . D 4 HOH A 18 918 923 HOH HOH . D 4 HOH A 19 919 924 HOH HOH . D 4 HOH A 20 920 925 HOH HOH . D 4 HOH A 21 921 927 HOH HOH . D 4 HOH A 22 922 928 HOH HOH . D 4 HOH A 23 923 929 HOH HOH . D 4 HOH A 24 924 930 HOH HOH . D 4 HOH A 25 925 931 HOH HOH . D 4 HOH A 26 926 932 HOH HOH . D 4 HOH A 27 927 933 HOH HOH . D 4 HOH A 28 928 934 HOH HOH . D 4 HOH A 29 929 936 HOH HOH . D 4 HOH A 30 930 937 HOH HOH . D 4 HOH A 31 931 939 HOH HOH . D 4 HOH A 32 932 940 HOH HOH . D 4 HOH A 33 933 941 HOH HOH . D 4 HOH A 34 934 943 HOH HOH . D 4 HOH A 35 935 944 HOH HOH . D 4 HOH A 36 936 945 HOH HOH . D 4 HOH A 37 937 946 HOH HOH . D 4 HOH A 38 938 947 HOH HOH . D 4 HOH A 39 939 948 HOH HOH . D 4 HOH A 40 940 949 HOH HOH . D 4 HOH A 41 941 950 HOH HOH . D 4 HOH A 42 942 951 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 1LB . . . B 2 11.917 -27.332 21.163 1 79.59 ? C01 1LB 801 A 1 HETATM 2 C C02 1LB . . . B 2 12.592 -26.701 22.332 1 80.74 ? C02 1LB 801 A 1 HETATM 3 N N03 1LB . . . B 2 13.113 -26.217 23.227 1 81.9 ? N03 1LB 801 A 1 HETATM 4 C C04 1LB . . . B 2 12.826 -27.281 19.98 1 79.46 ? C04 1LB 801 A 1 HETATM 5 N N05 1LB . . . B 2 12.279 -27.169 18.664 1 80.64 ? N05 1LB 801 A 1 HETATM 6 O O06 1LB . . . B 2 14.036 -27.346 20.133 1 78.15 ? O06 1LB 801 A 1 HETATM 7 C C07 1LB . . . B 2 11.591 -28.756 21.468 1 76.8 ? C07 1LB 801 A 1 HETATM 8 C C08 1LB . . . B 2 12.625 -29.812 21.259 1 72.53 ? C08 1LB 801 A 1 HETATM 9 C C09 1LB . . . B 2 12.746 -30.428 20.011 1 70.67 ? C09 1LB 801 A 1 HETATM 10 C C10 1LB . . . B 2 13.71 -31.416 19.807 1 69.76 ? C10 1LB 801 A 1 HETATM 11 C C11 1LB . . . B 2 14.54 -31.774 20.862 1 69.93 ? C11 1LB 801 A 1 HETATM 12 N N12 1LB . . . B 2 15.567 -32.7 20.965 1 69.59 ? N12 1LB 801 A 1 HETATM 13 N N13 1LB . . . B 2 16.069 -32.688 22.172 1 68.95 ? N13 1LB 801 A 1 HETATM 14 C C14 1LB . . . B 2 15.418 -31.77 22.927 1 68.81 ? C14 1LB 801 A 1 HETATM 15 C C15 1LB . . . B 2 14.414 -31.154 22.108 1 70.01 ? C15 1LB 801 A 1 HETATM 16 C C16 1LB . . . B 2 13.462 -30.177 22.304 1 71.06 ? C16 1LB 801 A 1 HETATM 17 H H011 1LB . . . B 2 11.1 -26.85 20.963 1 95.52 ? H011 1LB 801 A 1 HETATM 18 H H051 1LB . . . B 2 12.832 -27.139 17.943 1 96.78 ? H051 1LB 801 A 1 HETATM 19 H H052 1LB . . . B 2 11.379 -27.122 18.548 1 96.78 ? H052 1LB 801 A 1 HETATM 20 H H072 1LB . . . B 2 11.212 -28.832 22.357 1 92.17 ? H072 1LB 801 A 1 HETATM 21 H H091 1LB . . . B 2 12.159 -30.168 19.284 1 84.82 ? H091 1LB 801 A 1 HETATM 22 H H101 1LB . . . B 2 13.798 -31.847 18.943 1 83.73 ? H101 1LB 801 A 1 HETATM 23 H H121 1LB . . . B 2 15.851 -33.239 20.289 1 83.52 ? H121 1LB 801 A 1 HETATM 24 H H141 1LB . . . B 2 15.599 -31.566 23.858 1 82.59 ? H141 1LB 801 A 1 HETATM 25 H H161 1LB . . . B 2 13.375 -29.749 23.17 1 85.28 ? H161 1LB 801 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 25 #