data_4JG8 # _model_server_result.job_id A0GRa7IymESW394CS7GX7A _model_server_result.datetime_utc '2024-12-21 14:27:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jg8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":801}' # _entry.id 4JG8 # _exptl.entry_id 4JG8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 452.503 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S)-2-cyano-N-(1-hydroxy-2-methylpropan-2-yl)-3-[3-(3,4,5-trimethoxyphenyl)-1H-indazol-5-yl]propanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4JG8 _cell.length_a 46.35 _cell.length_b 46.35 _cell.length_c 292.36 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JG8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 194 A CYS 579 1_555 A SG CYS 194 A CYS 579 7_555 ? A ? ? A ? ? ? ? ? ? ? 2.041 ? covale ? covale1 A SG CYS 51 A CYS 436 1_555 B C12 1LE . A 1LE 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.806 ? # _chem_comp.formula 'C24 H28 N4 O5' _chem_comp.formula_weight 452.503 _chem_comp.id 1LE _chem_comp.mon_nstd_flag . _chem_comp.name (2S)-2-cyano-N-(1-hydroxy-2-methylpropan-2-yl)-3-[3-(3,4,5-trimethoxyphenyl)-1H-indazol-5-yl]propanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N11 C10 1LE trip 1 n n O08 C07 1LE sing 2 n n C10 C09 1LE sing 3 n n C07 C04 1LE sing 4 n n C15 C14 1LE doub 5 n y C15 C16 1LE sing 6 n y C14 C13 1LE sing 7 n y C05 C04 1LE sing 8 n n N03 C04 1LE sing 9 n n N03 C02 1LE sing 10 n n C04 C06 1LE sing 11 n n C09 C02 1LE sing 12 n n C09 C12 1LE sing 13 n n C16 N17 1LE sing 14 n y C16 C32 1LE doub 15 n y C02 O01 1LE doub 16 n n C13 C12 1LE sing 17 n n C13 C33 1LE doub 18 n y N17 N18 1LE sing 19 n y C32 C33 1LE sing 20 n y C32 C19 1LE sing 21 n y N18 C19 1LE doub 22 n y C19 C20 1LE sing 23 n n C20 C31 1LE doub 24 n y C20 C21 1LE sing 25 n y C31 C28 1LE sing 26 n y C21 C22 1LE doub 27 n y C28 O29 1LE sing 28 n n C28 C25 1LE doub 29 n y C22 C25 1LE sing 30 n y C22 O23 1LE sing 31 n n O29 C30 1LE sing 32 n n C25 O26 1LE sing 33 n n O23 C24 1LE sing 34 n n O26 C27 1LE sing 35 n n N03 H031 1LE sing 36 n n C05 H052 1LE sing 37 n n C05 H053 1LE sing 38 n n C05 H051 1LE sing 39 n n C06 H063 1LE sing 40 n n C06 H061 1LE sing 41 n n C06 H062 1LE sing 42 n n C07 H071 1LE sing 43 n n C07 H072 1LE sing 44 n n O08 H081 1LE sing 45 n n C09 H091 1LE sing 46 n n C12 H121 1LE sing 47 n n C12 H122 1LE sing 48 n n C14 H141 1LE sing 49 n n C15 H151 1LE sing 50 n n N17 H171 1LE sing 51 n n C21 H211 1LE sing 52 n n C24 H242 1LE sing 53 n n C24 H243 1LE sing 54 n n C24 H241 1LE sing 55 n n C27 H272 1LE sing 56 n n C27 H273 1LE sing 57 n n C27 H271 1LE sing 58 n n C30 H302 1LE sing 59 n n C30 H303 1LE sing 60 n n C30 H301 1LE sing 61 n n C31 H311 1LE sing 62 n n C33 H331 1LE sing 63 n n # _atom_sites.entry_id 4JG8 _atom_sites.fract_transf_matrix[1][1] 0.021575 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021575 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00342 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 1LE A 1 801 801 1LE 1LE . C 3 HOH A 1 901 901 HOH HOH . C 3 HOH A 2 902 902 HOH HOH . C 3 HOH A 3 903 903 HOH HOH . C 3 HOH A 4 904 904 HOH HOH . C 3 HOH A 5 905 906 HOH HOH . C 3 HOH A 6 906 907 HOH HOH . C 3 HOH A 7 907 908 HOH HOH . C 3 HOH A 8 908 909 HOH HOH . C 3 HOH A 9 909 912 HOH HOH . C 3 HOH A 10 910 913 HOH HOH . C 3 HOH A 11 911 914 HOH HOH . C 3 HOH A 12 912 915 HOH HOH . C 3 HOH A 13 913 917 HOH HOH . C 3 HOH A 14 914 918 HOH HOH . C 3 HOH A 15 915 919 HOH HOH . C 3 HOH A 16 916 920 HOH HOH . C 3 HOH A 17 917 921 HOH HOH . C 3 HOH A 18 918 922 HOH HOH . C 3 HOH A 19 919 923 HOH HOH . C 3 HOH A 20 920 924 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O01 1LE . . . B 2 14.646 4.562 21.229 1 69.39 ? O01 1LE 801 A 1 HETATM 2 C C02 1LE . . . B 2 13.701 4.233 20.526 1 68.86 ? C02 1LE 801 A 1 HETATM 3 N N03 1LE . . . B 2 13.711 2.938 19.862 1 84.76 ? N03 1LE 801 A 1 HETATM 4 C C04 1LE . . . B 2 14.834 2.026 20.024 1 100.11 ? C04 1LE 801 A 1 HETATM 5 C C05 1LE . . . B 2 16.085 2.665 19.525 1 100.15 ? C05 1LE 801 A 1 HETATM 6 C C06 1LE . . . B 2 14.997 1.656 21.453 1 100.3 ? C06 1LE 801 A 1 HETATM 7 C C07 1LE . . . B 2 14.573 0.786 19.231 1 113.65 ? C07 1LE 801 A 1 HETATM 8 O O08 1LE . . . B 2 14.164 1.141 17.96 1 121.45 ? O08 1LE 801 A 1 HETATM 9 C C09 1LE . . . B 2 12.531 5.179 20.349 1 53.21 ? C09 1LE 801 A 1 HETATM 10 C C10 1LE . . . B 2 12.104 5.102 18.933 1 45.85 ? C10 1LE 801 A 1 HETATM 11 N N11 1LE . . . B 2 11.779 5.03 17.836 1 44.02 ? N11 1LE 801 A 1 HETATM 12 C C12 1LE . . . B 2 12.929 6.594 20.748 1 47.17 ? C12 1LE 801 A 1 HETATM 13 C C13 1LE . . . B 2 11.775 7.582 20.641 1 41.57 ? C13 1LE 801 A 1 HETATM 14 C C14 1LE . . . B 2 11.393 8.087 19.406 1 38.07 ? C14 1LE 801 A 1 HETATM 15 C C15 1LE . . . B 2 10.338 8.999 19.314 1 38.04 ? C15 1LE 801 A 1 HETATM 16 C C16 1LE . . . B 2 9.669 9.417 20.469 1 40.89 ? C16 1LE 801 A 1 HETATM 17 N N17 1LE . . . B 2 8.607 10.3 20.668 1 45.67 ? N17 1LE 801 A 1 HETATM 18 N N18 1LE . . . B 2 8.309 10.382 21.962 1 46.11 ? N18 1LE 801 A 1 HETATM 19 C C19 1LE . . . B 2 9.153 9.565 22.662 1 43.14 ? C19 1LE 801 A 1 HETATM 20 C C20 1LE . . . B 2 9.149 9.368 24.172 1 43.53 ? C20 1LE 801 A 1 HETATM 21 C C21 1LE . . . B 2 9.063 10.462 25.002 1 44.43 ? C21 1LE 801 A 1 HETATM 22 C C22 1LE . . . B 2 9.061 10.279 26.496 1 46.08 ? C22 1LE 801 A 1 HETATM 23 O O23 1LE . . . B 2 8.976 11.38 27.338 1 51.04 ? O23 1LE 801 A 1 HETATM 24 C C24 1LE . . . B 2 7.745 11.832 27.775 1 54.09 ? C24 1LE 801 A 1 HETATM 25 C C25 1LE . . . B 2 9.149 9.02 27.034 1 45.5 ? C25 1LE 801 A 1 HETATM 26 O O26 1LE . . . B 2 9.146 8.861 28.404 1 47.09 ? O26 1LE 801 A 1 HETATM 27 C C27 1LE . . . B 2 10.312 9.065 29.119 1 46.64 ? C27 1LE 801 A 1 HETATM 28 C C28 1LE . . . B 2 9.243 7.825 26.136 1 43.6 ? C28 1LE 801 A 1 HETATM 29 O O29 1LE . . . B 2 9.327 6.563 26.69 1 44.67 ? O29 1LE 801 A 1 HETATM 30 C C30 1LE . . . B 2 8.189 5.972 27.227 1 43.63 ? C30 1LE 801 A 1 HETATM 31 C C31 1LE . . . B 2 9.243 7.99 24.764 1 41.89 ? C31 1LE 801 A 1 HETATM 32 C C32 1LE . . . B 2 10.051 8.924 21.711 1 40.2 ? C32 1LE 801 A 1 HETATM 33 C C33 1LE . . . B 2 11.104 8.008 21.801 1 40.48 ? C33 1LE 801 A 1 HETATM 34 H H031 1LE . . . B 2 13.005 2.695 19.334 1 101.71 ? H031 1LE 801 A 1 HETATM 35 H H052 1LE . . . B 2 16.036 2.763 18.556 1 120.19 ? H052 1LE 801 A 1 HETATM 36 H H053 1LE . . . B 2 16.839 2.114 19.754 1 120.19 ? H053 1LE 801 A 1 HETATM 37 H H051 1LE . . . B 2 16.187 3.536 19.933 1 120.19 ? H051 1LE 801 A 1 HETATM 38 H H063 1LE . . . B 2 14.379 0.939 21.675 1 120.36 ? H063 1LE 801 A 1 HETATM 39 H H061 1LE . . . B 2 15.906 1.358 21.608 1 120.36 ? H061 1LE 801 A 1 HETATM 40 H H062 1LE . . . B 2 14.811 2.426 22.009 1 120.36 ? H062 1LE 801 A 1 HETATM 41 H H071 1LE . . . B 2 15.387 0.259 19.176 1 136.38 ? H071 1LE 801 A 1 HETATM 42 H H072 1LE . . . B 2 13.877 0.265 19.663 1 136.38 ? H072 1LE 801 A 1 HETATM 43 H H081 1LE . . . B 2 13.905 0.42 17.522 1 145.74 ? H081 1LE 801 A 1 HETATM 44 H H091 1LE . . . B 2 11.799 4.887 20.897 1 63.85 ? H091 1LE 801 A 1 HETATM 45 H H122 1LE . . . B 2 13.267 6.594 21.652 1 56.6 ? H122 1LE 801 A 1 HETATM 46 H H141 1LE . . . B 2 11.853 7.798 18.604 1 45.68 ? H141 1LE 801 A 1 HETATM 47 H H151 1LE . . . B 2 10.07 9.344 18.449 1 45.65 ? H151 1LE 801 A 1 HETATM 48 H H171 1LE . . . B 2 8.178 10.756 20.004 1 54.81 ? H171 1LE 801 A 1 HETATM 49 H H211 1LE . . . B 2 9.003 11.355 24.623 1 53.32 ? H211 1LE 801 A 1 HETATM 50 H H242 1LE . . . B 2 7.399 12.497 27.147 1 64.9 ? H242 1LE 801 A 1 HETATM 51 H H243 1LE . . . B 2 7.122 11.079 27.828 1 64.9 ? H243 1LE 801 A 1 HETATM 52 H H241 1LE . . . B 2 7.842 12.239 28.661 1 64.9 ? H241 1LE 801 A 1 HETATM 53 H H272 1LE . . . B 2 11.028 9.328 28.507 1 55.97 ? H272 1LE 801 A 1 HETATM 54 H H273 1LE . . . B 2 10.562 8.239 29.577 1 55.97 ? H273 1LE 801 A 1 HETATM 55 H H271 1LE . . . B 2 10.171 9.771 29.777 1 55.97 ? H271 1LE 801 A 1 HETATM 56 H H302 1LE . . . B 2 7.772 5.399 26.555 1 52.35 ? H302 1LE 801 A 1 HETATM 57 H H303 1LE . . . B 2 7.56 6.665 27.497 1 52.35 ? H303 1LE 801 A 1 HETATM 58 H H301 1LE . . . B 2 8.434 5.439 27.998 1 52.35 ? H301 1LE 801 A 1 HETATM 59 H H311 1LE . . . B 2 9.305 7.215 24.182 1 50.26 ? H311 1LE 801 A 1 HETATM 60 H H331 1LE . . . B 2 11.371 7.665 22.664 1 48.58 ? H331 1LE 801 A 1 # _model_server_stats.io_time_ms 87 _model_server_stats.parse_time_ms 67 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 1261 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 60 #