data_4JGJ # _model_server_result.job_id eUoWjQeH-QJPZUXf56LNVw _model_server_result.datetime_utc '2025-03-01 04:25:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jgj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 4JGJ # _exptl.entry_id 4JGJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4JGJ _cell.length_a 101.168 _cell.length_b 101.168 _cell.length_c 75.729 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JGJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H 1 1 C 2 1 D 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 224 n n C1 O1 NAG sing 225 n n C1 O5 NAG sing 226 n n C1 H1 NAG sing 227 n n C2 C3 NAG sing 228 n n C2 N2 NAG sing 229 n n C2 H2 NAG sing 230 n n C3 C4 NAG sing 231 n n C3 O3 NAG sing 232 n n C3 H3 NAG sing 233 n n C4 C5 NAG sing 234 n n C4 O4 NAG sing 235 n n C4 H4 NAG sing 236 n n C5 C6 NAG sing 237 n n C5 O5 NAG sing 238 n n C5 H5 NAG sing 239 n n C6 O6 NAG sing 240 n n C6 H61 NAG sing 241 n n C6 H62 NAG sing 242 n n C7 C8 NAG sing 243 n n C7 N2 NAG sing 244 n n C7 O7 NAG doub 245 n n C8 H81 NAG sing 246 n n C8 H82 NAG sing 247 n n C8 H83 NAG sing 248 n n N2 HN2 NAG sing 249 n n O1 HO1 NAG sing 250 n n O3 HO3 NAG sing 251 n n O4 HO4 NAG sing 252 n n O6 HO6 NAG sing 253 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4JGJ _atom_sites.fract_transf_matrix[1][1] 0.009885 _atom_sites.fract_transf_matrix[1][2] 0.005707 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011414 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013205 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NAG A 1 301 301 NAG NAG . F 3 NAG B 1 201 302 NAG NAG . G 4 HOH A 1 401 1 HOH HOH . G 4 HOH A 2 402 2 HOH HOH . G 4 HOH A 3 403 6 HOH HOH . G 4 HOH A 4 404 7 HOH HOH . G 4 HOH A 5 405 8 HOH HOH . G 4 HOH A 6 406 9 HOH HOH . G 4 HOH A 7 407 10 HOH HOH . G 4 HOH A 8 408 11 HOH HOH . H 4 HOH B 1 301 3 HOH HOH . H 4 HOH B 2 302 4 HOH HOH . H 4 HOH B 3 303 5 HOH HOH . H 4 HOH B 4 304 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 3 62.281 81.986 27.736 1 55.77 ? C1 NAG 301 A 1 HETATM 2 C C2 NAG . . . E 3 61.986 83.087 28.706 1 63.38 ? C2 NAG 301 A 1 HETATM 3 C C3 NAG . . . E 3 60.531 83.461 28.662 1 62.58 ? C3 NAG 301 A 1 HETATM 4 C C4 NAG . . . E 3 60.006 83.598 27.267 1 60.85 ? C4 NAG 301 A 1 HETATM 5 C C5 NAG . . . E 3 60.386 82.401 26.451 1 58.51 ? C5 NAG 301 A 1 HETATM 6 C C6 NAG . . . E 3 59.934 82.57 25.039 1 47.12 ? C6 NAG 301 A 1 HETATM 7 C C7 NAG . . . E 3 62.488 83.603 31.113 1 49.41 ? C7 NAG 301 A 1 HETATM 8 C C8 NAG . . . E 3 62.84 83.117 32.477 1 36.2 ? C8 NAG 301 A 1 HETATM 9 N N2 NAG . . . E 3 62.331 82.665 30.042 1 56.36 ? N2 NAG 301 A 1 HETATM 10 O O3 NAG . . . E 3 60.348 84.658 29.323 1 57.81 ? O3 NAG 301 A 1 HETATM 11 O O4 NAG . . . E 3 58.633 83.721 27.317 1 56.34 ? O4 NAG 301 A 1 HETATM 12 O O5 NAG . . . E 3 61.756 82.264 26.491 1 56.17 ? O5 NAG 301 A 1 HETATM 13 O O6 NAG . . . E 3 58.563 82.408 24.975 1 43.68 ? O6 NAG 301 A 1 HETATM 14 O O7 NAG . . . E 3 62.331 84.803 30.917 1 54.36 ? O7 NAG 301 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #