data_4JGQ # _model_server_result.job_id rkBv4iGkLM46YfFSsNBflw _model_server_result.datetime_utc '2024-11-13 15:14:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jgq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 4JGQ # _exptl.entry_id 4JGQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 60.052 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4JGQ _cell.length_a 75.739 _cell.length_b 82.972 _cell.length_c 91.181 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JGQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C THR 36 A THR 69 1_555 A N MSE 37 A MSE 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale2 A C MSE 37 A MSE 70 1_555 A N ALA 38 A ALA 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale3 A C ARG 39 A ARG 72 1_555 A N MSE 40 A MSE 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale4 A C MSE 40 A MSE 73 1_555 A N THR 41 A THR 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale5 A C LYS 55 A LYS 88 1_555 A N MSE 56 A MSE 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale6 A C MSE 56 A MSE 89 1_555 A N GLN 57 A GLN 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale7 A C LYS 173 A LYS 206 1_555 A N MSE 174 A MSE 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale8 A C MSE 174 A MSE 207 1_555 A N ILE 175 A ILE 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale9 A C ASN 200 A ASN 233 1_555 A N MSE 201 A MSE 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale10 A C MSE 201 A MSE 234 1_555 A N LYS 202 A LYS 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale11 B C THR 36 B THR 69 1_555 B N MSE 37 B MSE 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale12 B C MSE 37 B MSE 70 1_555 B N ALA 38 B ALA 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale13 B C ARG 39 B ARG 72 1_555 B N MSE 40 B MSE 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale14 B C MSE 40 B MSE 73 1_555 B N THR 41 B THR 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale15 B C LYS 55 B LYS 88 1_555 B N MSE 56 B MSE 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale16 B C MSE 56 B MSE 89 1_555 B N GLN 57 B GLN 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale17 B C LYS 173 B LYS 206 1_555 B N MSE 174 B MSE 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale18 B C MSE 174 B MSE 207 1_555 B N ILE 175 B ILE 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale19 B C ASN 200 B ASN 233 1_555 B N MSE 201 B MSE 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale20 B C MSE 201 B MSE 234 1_555 B N LYS 202 B LYS 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C2 H4 O2' _chem_comp.formula_weight 60.052 _chem_comp.id ACY _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACY doub 1 n n C OXT ACY sing 2 n n C CH3 ACY sing 3 n n OXT HXT ACY sing 4 n n CH3 H1 ACY sing 5 n n CH3 H2 ACY sing 6 n n CH3 H3 ACY sing 7 n n # _atom_sites.entry_id 4JGQ _atom_sites.fract_transf_matrix[1][1] 0.013203 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012052 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010967 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ACY A 1 301 301 ACY ACY . D 2 ACY B 1 301 301 ACY ACY . E 3 HOH A 1 401 401 HOH HOH . E 3 HOH A 2 402 402 HOH HOH . E 3 HOH A 3 403 403 HOH HOH . E 3 HOH A 4 404 404 HOH HOH . E 3 HOH A 5 405 405 HOH HOH . E 3 HOH A 6 406 406 HOH HOH . E 3 HOH A 7 407 407 HOH HOH . E 3 HOH A 8 408 408 HOH HOH . E 3 HOH A 9 409 409 HOH HOH . E 3 HOH A 10 410 410 HOH HOH . E 3 HOH A 11 411 411 HOH HOH . E 3 HOH A 12 412 412 HOH HOH . E 3 HOH A 13 413 413 HOH HOH . E 3 HOH A 14 414 414 HOH HOH . E 3 HOH A 15 415 415 HOH HOH . F 3 HOH B 1 401 401 HOH HOH . F 3 HOH B 2 402 402 HOH HOH . F 3 HOH B 3 403 403 HOH HOH . F 3 HOH B 4 404 404 HOH HOH . F 3 HOH B 5 405 405 HOH HOH . F 3 HOH B 6 406 406 HOH HOH . F 3 HOH B 7 407 407 HOH HOH . F 3 HOH B 8 408 408 HOH HOH . F 3 HOH B 9 409 409 HOH HOH . F 3 HOH B 10 410 410 HOH HOH . F 3 HOH B 11 411 411 HOH HOH . F 3 HOH B 12 412 412 HOH HOH . F 3 HOH B 13 413 413 HOH HOH . F 3 HOH B 14 414 414 HOH HOH . F 3 HOH B 15 415 415 HOH HOH . F 3 HOH B 16 416 416 HOH HOH . F 3 HOH B 17 417 417 HOH HOH . F 3 HOH B 18 418 418 HOH HOH . F 3 HOH B 19 419 419 HOH HOH . F 3 HOH B 20 420 420 HOH HOH . F 3 HOH B 21 421 421 HOH HOH . F 3 HOH B 22 422 422 HOH HOH . F 3 HOH B 23 423 423 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACY . . . D 2 75.536 64.142 11.317 1 31.42 ? C ACY 301 B 1 HETATM 2 O O ACY . . . D 2 76.472 64.95 11.075 1 30.8 ? O ACY 301 B 1 HETATM 3 O OXT ACY . . . D 2 75.052 63.945 12.463 1 38.44 ? OXT ACY 301 B 1 HETATM 4 C CH3 ACY . . . D 2 74.96 63.36 10.164 1 21 ? CH3 ACY 301 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #