data_4JH0 # _model_server_result.job_id ljxkctXthsWIiIsZk2sLpQ _model_server_result.datetime_utc '2024-12-26 23:17:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jh0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":801}' # _entry.id 4JH0 # _exptl.entry_id 4JH0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 407.294 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[3-(aminomethyl)-4-(2,4-dichlorophenyl)-2-methyl-5-oxo-5,7-dihydro-6H-pyrrolo[3,4-b]pyridin-6-yl]-N,N-dimethylacetamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4JH0 _cell.length_a 65.311 _cell.length_b 67.105 _cell.length_c 423.771 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JH0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 290 A CYS 328 1_555 A SG CYS 301 A CYS 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.736 ? disulf ? disulf2 A SG CYS 347 A CYS 385 1_555 A SG CYS 356 A CYS 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.938 ? disulf ? disulf3 A SG CYS 406 A CYS 444 1_555 A SG CYS 409 A CYS 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.735 ? disulf ? disulf4 A SG CYS 416 A CYS 454 1_555 A SG CYS 434 A CYS 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.729 ? disulf ? disulf5 A SG CYS 611 A CYS 649 1_555 A SG CYS 724 A CYS 762 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.802 ? disulf ? disulf6 B SG CYS 290 B CYS 328 1_555 B SG CYS 301 B CYS 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.785 ? disulf ? disulf7 B SG CYS 347 B CYS 385 1_555 B SG CYS 356 B CYS 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.615 ? disulf ? disulf8 B SG CYS 406 B CYS 444 1_555 B SG CYS 409 B CYS 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? disulf ? disulf9 B SG CYS 416 B CYS 454 1_555 B SG CYS 434 B CYS 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.786 ? disulf ? disulf10 B SG CYS 611 B CYS 649 1_555 B SG CYS 724 B CYS 762 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.847 ? # _chem_comp.formula 'C19 H20 Cl2 N4 O2' _chem_comp.formula_weight 407.294 _chem_comp.id 1MD _chem_comp.mon_nstd_flag . _chem_comp.name 2-[3-(aminomethyl)-4-(2,4-dichlorophenyl)-2-methyl-5-oxo-5,7-dihydro-6H-pyrrolo[3,4-b]pyridin-6-yl]-N,N-dimethylacetamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C25 N2 1MD sing 1 n n C13 C3 1MD sing 2 n n N4 C6 1MD doub 3 n y N4 C3 1MD sing 4 n y O2 C7 1MD doub 5 n n N2 C7 1MD sing 6 n n N2 C8 1MD sing 7 n n C5 C6 1MD sing 8 n n C5 N1 1MD sing 9 n n C7 C10 1MD sing 10 n n C6 C4 1MD sing 11 n y C3 C2 1MD doub 12 n y C10 N1 1MD sing 13 n n N1 C9 1MD sing 14 n n C4 C9 1MD sing 15 n n C4 C1 1MD doub 16 n y C2 C15 1MD sing 17 n n C2 C1 1MD sing 18 n y C9 O1 1MD doub 19 n n C15 N16 1MD sing 20 n n C1 C14 1MD sing 21 n n C14 C17 1MD doub 22 n y C14 C21 1MD sing 23 n y C17 C18 1MD sing 24 n y CL1 C21 1MD sing 25 n n C21 C20 1MD doub 26 n y C18 C19 1MD doub 27 n y C20 C19 1MD sing 28 n y C19 CL2 1MD sing 29 n n C5 H1 1MD sing 30 n n C5 H2 1MD sing 31 n n C10 H3 1MD sing 32 n n C10 H4 1MD sing 33 n n C13 H5 1MD sing 34 n n C13 H6 1MD sing 35 n n C13 H7 1MD sing 36 n n C15 H8 1MD sing 37 n n C15 H9 1MD sing 38 n n N16 H10 1MD sing 39 n n N16 H11 1MD sing 40 n n C17 H13 1MD sing 41 n n C18 H14 1MD sing 42 n n C20 H15 1MD sing 43 n n C25 H16 1MD sing 44 n n C25 H17 1MD sing 45 n n C25 H18 1MD sing 46 n n C8 H19 1MD sing 47 n n C8 H20 1MD sing 48 n n C8 H21 1MD sing 49 n n # _atom_sites.entry_id 4JH0 _atom_sites.fract_transf_matrix[1][1] 0.015311 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014902 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00236 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 1MD A 1 801 1 1MD LG1 . D 2 1MD B 1 801 2 1MD LG1 . E 3 HOH A 1 901 1 HOH HOH . E 3 HOH A 2 902 3 HOH HOH . E 3 HOH A 3 903 5 HOH HOH . E 3 HOH A 4 904 7 HOH HOH . E 3 HOH A 5 905 8 HOH HOH . E 3 HOH A 6 906 11 HOH HOH . E 3 HOH A 7 907 12 HOH HOH . E 3 HOH A 8 908 13 HOH HOH . E 3 HOH A 9 909 17 HOH HOH . E 3 HOH A 10 910 22 HOH HOH . E 3 HOH A 11 911 24 HOH HOH . E 3 HOH A 12 912 25 HOH HOH . E 3 HOH A 13 913 26 HOH HOH . E 3 HOH A 14 914 27 HOH HOH . E 3 HOH A 15 915 32 HOH HOH . E 3 HOH A 16 916 35 HOH HOH . E 3 HOH A 17 917 37 HOH HOH . E 3 HOH A 18 918 39 HOH HOH . E 3 HOH A 19 919 42 HOH HOH . E 3 HOH A 20 920 43 HOH HOH . E 3 HOH A 21 921 44 HOH HOH . E 3 HOH A 22 922 46 HOH HOH . E 3 HOH A 23 923 48 HOH HOH . E 3 HOH A 24 924 49 HOH HOH . E 3 HOH A 25 925 51 HOH HOH . E 3 HOH A 26 926 52 HOH HOH . E 3 HOH A 27 927 58 HOH HOH . E 3 HOH A 28 928 63 HOH HOH . E 3 HOH A 29 929 64 HOH HOH . E 3 HOH A 30 930 69 HOH HOH . E 3 HOH A 31 931 70 HOH HOH . E 3 HOH A 32 932 73 HOH HOH . E 3 HOH A 33 933 78 HOH HOH . E 3 HOH A 34 934 83 HOH HOH . F 3 HOH B 1 901 2 HOH HOH . F 3 HOH B 2 902 4 HOH HOH . F 3 HOH B 3 903 6 HOH HOH . F 3 HOH B 4 904 9 HOH HOH . F 3 HOH B 5 905 10 HOH HOH . F 3 HOH B 6 906 14 HOH HOH . F 3 HOH B 7 907 15 HOH HOH . F 3 HOH B 8 908 16 HOH HOH . F 3 HOH B 9 909 18 HOH HOH . F 3 HOH B 10 910 19 HOH HOH . F 3 HOH B 11 911 21 HOH HOH . F 3 HOH B 12 912 23 HOH HOH . F 3 HOH B 13 913 28 HOH HOH . F 3 HOH B 14 914 29 HOH HOH . F 3 HOH B 15 915 30 HOH HOH . F 3 HOH B 16 916 31 HOH HOH . F 3 HOH B 17 917 33 HOH HOH . F 3 HOH B 18 918 34 HOH HOH . F 3 HOH B 19 919 36 HOH HOH . F 3 HOH B 20 920 38 HOH HOH . F 3 HOH B 21 921 40 HOH HOH . F 3 HOH B 22 922 41 HOH HOH . F 3 HOH B 23 923 50 HOH HOH . F 3 HOH B 24 924 53 HOH HOH . F 3 HOH B 25 925 54 HOH HOH . F 3 HOH B 26 926 55 HOH HOH . F 3 HOH B 27 927 56 HOH HOH . F 3 HOH B 28 928 59 HOH HOH . F 3 HOH B 29 929 60 HOH HOH . F 3 HOH B 30 930 61 HOH HOH . F 3 HOH B 31 931 62 HOH HOH . F 3 HOH B 32 932 65 HOH HOH . F 3 HOH B 33 933 66 HOH HOH . F 3 HOH B 34 934 72 HOH HOH . F 3 HOH B 35 935 74 HOH HOH . F 3 HOH B 36 936 75 HOH HOH . F 3 HOH B 37 937 76 HOH HOH . F 3 HOH B 38 938 82 HOH HOH . F 3 HOH B 39 939 84 HOH HOH . F 3 HOH B 40 940 87 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 1MD . . . C 2 48.173 50.117 35.399 1 21.93 ? C1 1MD 801 A 1 HETATM 2 C C2 1MD . . . C 2 47.144 50.888 34.748 1 21.93 ? C2 1MD 801 A 1 HETATM 3 C C3 1MD . . . C 2 47.407 51.46 33.458 1 21.93 ? C3 1MD 801 A 1 HETATM 4 N N4 1MD . . . C 2 48.56 51.246 32.785 1 21.93 ? N4 1MD 801 A 1 HETATM 5 C C4 1MD . . . C 2 49.375 49.977 34.707 1 21.93 ? C4 1MD 801 A 1 HETATM 6 C C6 1MD . . . C 2 49.52 50.545 33.448 1 21.93 ? C6 1MD 801 A 1 HETATM 7 C C5 1MD . . . C 2 50.899 50.326 32.949 1 21.93 ? C5 1MD 801 A 1 HETATM 8 N N1 1MD . . . C 2 51.465 49.531 34.027 1 21.93 ? N1 1MD 801 A 1 HETATM 9 C C9 1MD . . . C 2 50.631 49.332 35.064 1 21.93 ? C9 1MD 801 A 1 HETATM 10 C C10 1MD . . . C 2 52.641 48.66 33.938 1 21.93 ? C10 1MD 801 A 1 HETATM 11 C C7 1MD . . . C 2 52.258 47.402 33.146 1 21.93 ? C7 1MD 801 A 1 HETATM 12 C C13 1MD . . . C 2 46.489 52.387 32.732 1 21.93 ? C13 1MD 801 A 1 HETATM 13 C C14 1MD . . . C 2 48.056 49.609 36.795 1 21.93 ? C14 1MD 801 A 1 HETATM 14 C C15 1MD . . . C 2 45.754 51.01 35.322 1 21.93 ? C15 1MD 801 A 1 HETATM 15 N N16 1MD . . . C 2 45.699 51.86 36.509 1 21.93 ? N16 1MD 801 A 1 HETATM 16 C C17 1MD . . . C 2 47.441 48.347 37.077 1 21.93 ? C17 1MD 801 A 1 HETATM 17 C C18 1MD . . . C 2 47.359 47.924 38.458 1 21.93 ? C18 1MD 801 A 1 HETATM 18 C C19 1MD . . . C 2 47.881 48.745 39.512 1 21.93 ? C19 1MD 801 A 1 HETATM 19 C C20 1MD . . . C 2 48.48 50.044 39.276 1 21.93 ? C20 1MD 801 A 1 HETATM 20 C C21 1MD . . . C 2 48.531 50.406 37.895 1 21.93 ? C21 1MD 801 A 1 HETATM 21 CL CL1 1MD . . . C 2 49.233 51.913 37.604 1 21.94 ? CL1 1MD 801 A 1 HETATM 22 CL CL2 1MD . . . C 2 47.816 48.178 41.12 1 21.94 ? CL2 1MD 801 A 1 HETATM 23 N N2 1MD . . . C 2 53.328 46.576 32.884 1 21.93 ? N2 1MD 801 A 1 HETATM 24 C C25 1MD . . . C 2 53.203 45.273 32.146 1 21.93 ? C25 1MD 801 A 1 HETATM 25 O O2 1MD . . . C 2 51.066 47.199 32.801 1 21.93 ? O2 1MD 801 A 1 HETATM 26 O O1 1MD . . . C 2 50.973 48.714 36.082 1 21.93 ? O1 1MD 801 A 1 HETATM 27 C C8 1MD . . . C 2 54.611 46.973 33.523 1 21.93 ? C8 1MD 801 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 27 #