data_4JH4 # _model_server_result.job_id 9Pxg4mAVjs0cZNDI54j9sg _model_server_result.datetime_utc '2024-11-15 20:13:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jh4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 4JH4 # _exptl.entry_id 4JH4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4JH4 _cell.length_a 64.405 _cell.length_b 68.54 _cell.length_c 70.443 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JH4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 7 A HIS 7 1_555 E NI NI . B NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc2 A NE2 HIS 66 A HIS 66 1_555 C NI NI . A NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc3 A OE1 GLU 115 A GLU 115 1_555 C NI NI . A NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc4 C NI NI . A NI 201 1_555 D O3P FCN . A FCN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.947 ? metalc ? metalc5 C NI NI . A NI 201 1_555 D O FCN . A FCN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc6 C NI NI . A NI 201 1_555 B NE2 HIS 7 B HIS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc7 B NE2 HIS 66 B HIS 66 1_555 E NI NI . B NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc8 B OE1 GLU 115 B GLU 115 1_555 E NI NI . B NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? metalc ? metalc9 E NI NI . B NI 201 1_555 F O3P FCN . B FCN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc10 E NI NI . B NI 201 1_555 F O FCN . B FCN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4JH4 _atom_sites.fract_transf_matrix[1][1] 0.015527 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01459 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014196 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NI A 1 201 1 NI NI . D 3 FCN A 1 202 1 FCN FCN . E 2 NI B 1 201 1 NI NI . F 3 FCN B 1 202 1 FCN FCN . G 4 HOH A 1 301 4 HOH HOH . G 4 HOH A 2 302 7 HOH HOH . G 4 HOH A 3 303 9 HOH HOH . G 4 HOH A 4 304 10 HOH HOH . G 4 HOH A 5 305 14 HOH HOH . G 4 HOH A 6 306 16 HOH HOH . G 4 HOH A 7 307 18 HOH HOH . G 4 HOH A 8 308 20 HOH HOH . G 4 HOH A 9 309 21 HOH HOH . G 4 HOH A 10 310 25 HOH HOH . G 4 HOH A 11 311 29 HOH HOH . G 4 HOH A 12 312 33 HOH HOH . G 4 HOH A 13 313 34 HOH HOH . G 4 HOH A 14 314 38 HOH HOH . G 4 HOH A 15 315 42 HOH HOH . G 4 HOH A 16 316 43 HOH HOH . G 4 HOH A 17 317 46 HOH HOH . G 4 HOH A 18 318 49 HOH HOH . G 4 HOH A 19 319 50 HOH HOH . G 4 HOH A 20 320 54 HOH HOH . G 4 HOH A 21 321 55 HOH HOH . G 4 HOH A 22 322 57 HOH HOH . G 4 HOH A 23 323 59 HOH HOH . G 4 HOH A 24 324 60 HOH HOH . G 4 HOH A 25 325 62 HOH HOH . G 4 HOH A 26 326 63 HOH HOH . G 4 HOH A 27 327 64 HOH HOH . G 4 HOH A 28 328 65 HOH HOH . G 4 HOH A 29 329 67 HOH HOH . G 4 HOH A 30 330 69 HOH HOH . G 4 HOH A 31 331 70 HOH HOH . G 4 HOH A 32 332 79 HOH HOH . G 4 HOH A 33 333 81 HOH HOH . G 4 HOH A 34 334 86 HOH HOH . G 4 HOH A 35 335 87 HOH HOH . G 4 HOH A 36 336 88 HOH HOH . G 4 HOH A 37 337 89 HOH HOH . G 4 HOH A 38 338 90 HOH HOH . G 4 HOH A 39 339 94 HOH HOH . G 4 HOH A 40 340 96 HOH HOH . G 4 HOH A 41 341 99 HOH HOH . G 4 HOH A 42 342 105 HOH HOH . G 4 HOH A 43 343 106 HOH HOH . G 4 HOH A 44 344 107 HOH HOH . G 4 HOH A 45 345 111 HOH HOH . G 4 HOH A 46 346 112 HOH HOH . G 4 HOH A 47 347 115 HOH HOH . G 4 HOH A 48 348 116 HOH HOH . G 4 HOH A 49 349 118 HOH HOH . G 4 HOH A 50 350 119 HOH HOH . G 4 HOH A 51 351 120 HOH HOH . G 4 HOH A 52 352 121 HOH HOH . G 4 HOH A 53 353 126 HOH HOH . G 4 HOH A 54 354 128 HOH HOH . G 4 HOH A 55 355 130 HOH HOH . G 4 HOH A 56 356 133 HOH HOH . G 4 HOH A 57 357 134 HOH HOH . G 4 HOH A 58 358 136 HOH HOH . G 4 HOH A 59 359 141 HOH HOH . G 4 HOH A 60 360 143 HOH HOH . G 4 HOH A 61 361 145 HOH HOH . G 4 HOH A 62 362 149 HOH HOH . G 4 HOH A 63 363 151 HOH HOH . G 4 HOH A 64 364 152 HOH HOH . G 4 HOH A 65 365 153 HOH HOH . G 4 HOH A 66 366 159 HOH HOH . G 4 HOH A 67 367 161 HOH HOH . G 4 HOH A 68 368 163 HOH HOH . H 4 HOH B 1 301 3 HOH HOH . H 4 HOH B 2 302 5 HOH HOH . H 4 HOH B 3 303 8 HOH HOH . H 4 HOH B 4 304 11 HOH HOH . H 4 HOH B 5 305 12 HOH HOH . H 4 HOH B 6 306 13 HOH HOH . H 4 HOH B 7 307 15 HOH HOH . H 4 HOH B 8 308 17 HOH HOH . H 4 HOH B 9 309 19 HOH HOH . H 4 HOH B 10 310 22 HOH HOH . H 4 HOH B 11 311 23 HOH HOH . H 4 HOH B 12 312 24 HOH HOH . H 4 HOH B 13 313 27 HOH HOH . H 4 HOH B 14 314 28 HOH HOH . H 4 HOH B 15 315 30 HOH HOH . H 4 HOH B 16 316 31 HOH HOH . H 4 HOH B 17 317 32 HOH HOH . H 4 HOH B 18 318 35 HOH HOH . H 4 HOH B 19 319 36 HOH HOH . H 4 HOH B 20 320 37 HOH HOH . H 4 HOH B 21 321 39 HOH HOH . H 4 HOH B 22 322 40 HOH HOH . H 4 HOH B 23 323 41 HOH HOH . H 4 HOH B 24 324 44 HOH HOH . H 4 HOH B 25 325 45 HOH HOH . H 4 HOH B 26 326 47 HOH HOH . H 4 HOH B 27 327 48 HOH HOH . H 4 HOH B 28 328 61 HOH HOH . H 4 HOH B 29 329 66 HOH HOH . H 4 HOH B 30 330 68 HOH HOH . H 4 HOH B 31 331 72 HOH HOH . H 4 HOH B 32 332 74 HOH HOH . H 4 HOH B 33 333 77 HOH HOH . H 4 HOH B 34 334 78 HOH HOH . H 4 HOH B 35 335 80 HOH HOH . H 4 HOH B 36 336 82 HOH HOH . H 4 HOH B 37 337 83 HOH HOH . H 4 HOH B 38 338 84 HOH HOH . H 4 HOH B 39 339 85 HOH HOH . H 4 HOH B 40 340 91 HOH HOH . H 4 HOH B 41 341 92 HOH HOH . H 4 HOH B 42 342 93 HOH HOH . H 4 HOH B 43 343 101 HOH HOH . H 4 HOH B 44 344 102 HOH HOH . H 4 HOH B 45 345 103 HOH HOH . H 4 HOH B 46 346 104 HOH HOH . H 4 HOH B 47 347 108 HOH HOH . H 4 HOH B 48 348 109 HOH HOH . H 4 HOH B 49 349 110 HOH HOH . H 4 HOH B 50 350 113 HOH HOH . H 4 HOH B 51 351 114 HOH HOH . H 4 HOH B 52 352 117 HOH HOH . H 4 HOH B 53 353 123 HOH HOH . H 4 HOH B 54 354 125 HOH HOH . H 4 HOH B 55 355 131 HOH HOH . H 4 HOH B 56 356 135 HOH HOH . H 4 HOH B 57 357 137 HOH HOH . H 4 HOH B 58 358 139 HOH HOH . H 4 HOH B 59 359 142 HOH HOH . H 4 HOH B 60 360 144 HOH HOH . H 4 HOH B 61 361 146 HOH HOH . H 4 HOH B 62 362 147 HOH HOH . H 4 HOH B 63 363 148 HOH HOH . H 4 HOH B 64 364 150 HOH HOH . H 4 HOH B 65 365 154 HOH HOH . H 4 HOH B 66 366 155 HOH HOH . H 4 HOH B 67 367 156 HOH HOH . H 4 HOH B 68 368 157 HOH HOH . H 4 HOH B 69 369 158 HOH HOH . H 4 HOH B 70 370 160 HOH HOH . H 4 HOH B 71 371 162 HOH HOH . H 4 HOH B 72 372 164 HOH HOH . H 4 HOH B 73 373 165 HOH HOH . H 4 HOH B 74 374 166 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 25.477 _atom_site.Cartn_y 57.169 _atom_site.Cartn_z 10.307 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 15.99 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 201 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 357 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #