data_4JH9
#
_model_server_result.job_id            7z5xvOZEKXi9mA9Zo3-kVw 
_model_server_result.datetime_utc      '2024-11-04 23:31:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4jh9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":202}' 
#
_entry.id    4JH9 
#
_exptl.entry_id    4JH9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              259.217 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-2-azanyl-3-[(1R,2S)-2-oxidanyl-1-phosphono-propyl]sulfanyl-propanoic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4JH9 
_cell.length_a            56.475 
_cell.length_b            64.477 
_cell.length_c            83.907 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4JH9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 7 A HIS 7 1_555 E MN MN . B MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? 
metalc ? metalc2 A NE2 HIS 66 A HIS 66 1_555 C MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? 
metalc ? metalc3 A OE1 GLU 115 A GLU 115 1_555 C MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.955 ? 
metalc ? metalc4 C MN MN . A MN 201 1_555 D OAF 1KM . A 1KM 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? 
metalc ? metalc5 C MN MN . A MN 201 1_555 D OAE 1KM . A 1KM 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? 
metalc ? metalc6 C MN MN . A MN 201 1_555 B NE2 HIS 7 B HIS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? 
metalc ? metalc7 B NE2 HIS 66 B HIS 66 1_555 E MN MN . B MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? 
metalc ? metalc8 B OE1 GLU 115 B GLU 115 1_555 E MN MN . B MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.807 ? 
metalc ? metalc9 E MN MN . B MN 201 1_555 F OAH 1KM . B 1KM 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.93 ? 
metalc ? metalc10 E MN MN . B MN 201 1_555 F OAE 1KM . B 1KM 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? 
#
_chem_comp.formula           'C6 H14 N O6 P S' 
_chem_comp.formula_weight    259.217 
_chem_comp.id                1KM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-2-azanyl-3-[(1R,2S)-2-oxidanyl-1-phosphono-propyl]sulfanyl-propanoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O C 1KM doub 1 n n 
OXT C 1KM sing 2 n n 
C CA 1KM sing 3 n n 
OAH PAO 1KM doub 4 n n 
OAG PAO 1KM sing 5 n n 
CA N 1KM sing 6 n n 
CA CB 1KM sing 7 n n 
CB SAJ 1KM sing 8 n n 
PAO OAF 1KM sing 9 n n 
PAO CAN 1KM sing 10 n n 
SAJ CAN 1KM sing 11 n n 
CAN CAL 1KM sing 12 n n 
CAA CAL 1KM sing 13 n n 
CAL OAE 1KM sing 14 n n 
OXT H1 1KM sing 15 n n 
CA H2 1KM sing 16 n n 
N H3 1KM sing 17 n n 
N H4 1KM sing 18 n n 
CB H6 1KM sing 19 n n 
CB H7 1KM sing 20 n n 
CAN H8 1KM sing 21 n n 
OAG H9 1KM sing 22 n n 
OAF H10 1KM sing 23 n n 
CAL H11 1KM sing 24 n n 
CAA H12 1KM sing 25 n n 
CAA H13 1KM sing 26 n n 
CAA H14 1KM sing 27 n n 
OAE H15 1KM sing 28 n n 
#
_atom_sites.entry_id                     4JH9 
_atom_sites.fract_transf_matrix[1][1]    0.017707 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015509 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011918 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MN A 1 201 1 MN MN . 
D 3 1KM A 1 202 1 1KM DRG . 
E 2 MN B 1 201 1 MN MN . 
F 3 1KM B 1 202 1 1KM DRG . 
G 4 HOH A 1 301 2 HOH HOH . 
G 4 HOH A 2 302 3 HOH HOH . 
G 4 HOH A 3 303 4 HOH HOH . 
G 4 HOH A 4 304 9 HOH HOH . 
G 4 HOH A 5 305 10 HOH HOH . 
G 4 HOH A 6 306 11 HOH HOH . 
G 4 HOH A 7 307 12 HOH HOH . 
G 4 HOH A 8 308 13 HOH HOH . 
G 4 HOH A 9 309 15 HOH HOH . 
G 4 HOH A 10 310 17 HOH HOH . 
G 4 HOH A 11 311 18 HOH HOH . 
G 4 HOH A 12 312 21 HOH HOH . 
G 4 HOH A 13 313 23 HOH HOH . 
G 4 HOH A 14 314 24 HOH HOH . 
G 4 HOH A 15 315 27 HOH HOH . 
G 4 HOH A 16 316 30 HOH HOH . 
G 4 HOH A 17 317 31 HOH HOH . 
G 4 HOH A 18 318 32 HOH HOH . 
G 4 HOH A 19 319 33 HOH HOH . 
G 4 HOH A 20 320 35 HOH HOH . 
G 4 HOH A 21 321 37 HOH HOH . 
G 4 HOH A 22 322 40 HOH HOH . 
G 4 HOH A 23 323 41 HOH HOH . 
G 4 HOH A 24 324 43 HOH HOH . 
G 4 HOH A 25 325 46 HOH HOH . 
G 4 HOH A 26 326 47 HOH HOH . 
G 4 HOH A 27 327 52 HOH HOH . 
G 4 HOH A 28 328 53 HOH HOH . 
G 4 HOH A 29 329 55 HOH HOH . 
G 4 HOH A 30 330 62 HOH HOH . 
G 4 HOH A 31 331 63 HOH HOH . 
G 4 HOH A 32 332 65 HOH HOH . 
G 4 HOH A 33 333 67 HOH HOH . 
G 4 HOH A 34 334 68 HOH HOH . 
G 4 HOH A 35 335 69 HOH HOH . 
G 4 HOH A 36 336 70 HOH HOH . 
G 4 HOH A 37 337 72 HOH HOH . 
G 4 HOH A 38 338 74 HOH HOH . 
G 4 HOH A 39 339 76 HOH HOH . 
G 4 HOH A 40 340 82 HOH HOH . 
G 4 HOH A 41 341 86 HOH HOH . 
G 4 HOH A 42 342 87 HOH HOH . 
G 4 HOH A 43 343 88 HOH HOH . 
G 4 HOH A 44 344 90 HOH HOH . 
G 4 HOH A 45 345 94 HOH HOH . 
G 4 HOH A 46 346 95 HOH HOH . 
G 4 HOH A 47 347 97 HOH HOH . 
G 4 HOH A 48 348 99 HOH HOH . 
G 4 HOH A 49 349 102 HOH HOH . 
G 4 HOH A 50 350 103 HOH HOH . 
G 4 HOH A 51 351 104 HOH HOH . 
G 4 HOH A 52 352 106 HOH HOH . 
G 4 HOH A 53 353 113 HOH HOH . 
G 4 HOH A 54 354 114 HOH HOH . 
G 4 HOH A 55 355 116 HOH HOH . 
G 4 HOH A 56 356 121 HOH HOH . 
G 4 HOH A 57 357 123 HOH HOH . 
G 4 HOH A 58 358 124 HOH HOH . 
G 4 HOH A 59 359 125 HOH HOH . 
G 4 HOH A 60 360 126 HOH HOH . 
G 4 HOH A 61 361 127 HOH HOH . 
G 4 HOH A 62 362 129 HOH HOH . 
G 4 HOH A 63 363 130 HOH HOH . 
G 4 HOH A 64 364 132 HOH HOH . 
G 4 HOH A 65 365 136 HOH HOH . 
G 4 HOH A 66 366 137 HOH HOH . 
G 4 HOH A 67 367 138 HOH HOH . 
G 4 HOH A 68 368 139 HOH HOH . 
G 4 HOH A 69 369 141 HOH HOH . 
G 4 HOH A 70 370 109 HOH HOH . 
H 4 HOH B 1 301 1 HOH HOH . 
H 4 HOH B 2 302 5 HOH HOH . 
H 4 HOH B 3 303 6 HOH HOH . 
H 4 HOH B 4 304 7 HOH HOH . 
H 4 HOH B 5 305 8 HOH HOH . 
H 4 HOH B 6 306 14 HOH HOH . 
H 4 HOH B 7 307 16 HOH HOH . 
H 4 HOH B 8 308 19 HOH HOH . 
H 4 HOH B 9 309 20 HOH HOH . 
H 4 HOH B 10 310 22 HOH HOH . 
H 4 HOH B 11 311 25 HOH HOH . 
H 4 HOH B 12 312 28 HOH HOH . 
H 4 HOH B 13 313 29 HOH HOH . 
H 4 HOH B 14 314 34 HOH HOH . 
H 4 HOH B 15 315 38 HOH HOH . 
H 4 HOH B 16 316 39 HOH HOH . 
H 4 HOH B 17 317 42 HOH HOH . 
H 4 HOH B 18 318 44 HOH HOH . 
H 4 HOH B 19 319 45 HOH HOH . 
H 4 HOH B 20 320 48 HOH HOH . 
H 4 HOH B 21 321 49 HOH HOH . 
H 4 HOH B 22 322 50 HOH HOH . 
H 4 HOH B 23 323 54 HOH HOH . 
H 4 HOH B 24 324 56 HOH HOH . 
H 4 HOH B 25 325 57 HOH HOH . 
H 4 HOH B 26 326 58 HOH HOH . 
H 4 HOH B 27 327 59 HOH HOH . 
H 4 HOH B 28 328 60 HOH HOH . 
H 4 HOH B 29 329 61 HOH HOH . 
H 4 HOH B 30 330 64 HOH HOH . 
H 4 HOH B 31 331 66 HOH HOH . 
H 4 HOH B 32 332 71 HOH HOH . 
H 4 HOH B 33 333 73 HOH HOH . 
H 4 HOH B 34 334 75 HOH HOH . 
H 4 HOH B 35 335 78 HOH HOH . 
H 4 HOH B 36 336 79 HOH HOH . 
H 4 HOH B 37 337 81 HOH HOH . 
H 4 HOH B 38 338 83 HOH HOH . 
H 4 HOH B 39 339 84 HOH HOH . 
H 4 HOH B 40 340 85 HOH HOH . 
H 4 HOH B 41 341 89 HOH HOH . 
H 4 HOH B 42 342 91 HOH HOH . 
H 4 HOH B 43 343 92 HOH HOH . 
H 4 HOH B 44 344 93 HOH HOH . 
H 4 HOH B 45 345 96 HOH HOH . 
H 4 HOH B 46 346 98 HOH HOH . 
H 4 HOH B 47 347 100 HOH HOH . 
H 4 HOH B 48 348 101 HOH HOH . 
H 4 HOH B 49 349 105 HOH HOH . 
H 4 HOH B 50 350 107 HOH HOH . 
H 4 HOH B 51 351 108 HOH HOH . 
H 4 HOH B 52 352 110 HOH HOH . 
H 4 HOH B 53 353 111 HOH HOH . 
H 4 HOH B 54 354 115 HOH HOH . 
H 4 HOH B 55 355 117 HOH HOH . 
H 4 HOH B 56 356 118 HOH HOH . 
H 4 HOH B 57 357 119 HOH HOH . 
H 4 HOH B 58 358 120 HOH HOH . 
H 4 HOH B 59 359 122 HOH HOH . 
H 4 HOH B 60 360 128 HOH HOH . 
H 4 HOH B 61 361 131 HOH HOH . 
H 4 HOH B 62 362 133 HOH HOH . 
H 4 HOH B 63 363 134 HOH HOH . 
H 4 HOH B 64 364 135 HOH HOH . 
H 4 HOH B 65 365 140 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O 1KM . . . D 3 -4.189 1.437 1.768 1 59.16 ? O 1KM 202 A 1 
HETATM 2 C C 1KM . . . D 3 -3.817 0.609 2.648 1 59.28 ? C 1KM 202 A 1 
HETATM 3 O OXT 1KM . . . D 3 -3.379 -0.553 2.439 1 61.1 ? OXT 1KM 202 A 1 
HETATM 4 C CA 1KM . . . D 3 -3.865 1.044 4.124 1 48.37 ? CA 1KM 202 A 1 
HETATM 5 N N 1KM . . . D 3 -2.858 0.32 4.937 1 43.82 ? N 1KM 202 A 1 
HETATM 6 C CB 1KM . . . D 3 -3.488 2.475 4.289 1 45.67 ? CB 1KM 202 A 1 
HETATM 7 S SAJ 1KM . . . D 3 -3.908 2.876 6.012 1 37.11 ? SAJ 1KM 202 A 1 
HETATM 8 C CAN 1KM . . . D 3 -2.503 2.714 7.186 1 27.28 ? CAN 1KM 202 A 1 
HETATM 9 P PAO 1KM . . . D 3 -0.895 3.165 6.49 1 25.69 ? PAO 1KM 202 A 1 
HETATM 10 O OAG 1KM . . . D 3 -0.587 1.792 5.68 1 26.64 ? OAG 1KM 202 A 1 
HETATM 11 O OAH 1KM . . . D 3 -0.979 4.464 5.527 1 25.59 ? OAH 1KM 202 A 1 
HETATM 12 O OAF 1KM . . . D 3 0.364 3.297 7.475 1 22.21 ? OAF 1KM 202 A 1 
HETATM 13 C CAL 1KM . . . D 3 -2.881 3.534 8.433 1 27.03 ? CAL 1KM 202 A 1 
HETATM 14 C CAA 1KM . . . D 3 -3.044 4.999 8.032 1 22.62 ? CAA 1KM 202 A 1 
HETATM 15 O OAE 1KM . . . D 3 -1.894 3.394 9.519 1 30.1 ? OAE 1KM 202 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           15 
#