data_4JHG # _model_server_result.job_id 4g67kL0ixll55shFBXchqQ _model_server_result.datetime_utc '2024-11-24 05:37:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jhg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 4JHG # _exptl.entry_id 4JHG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 102.046 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALONATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4JHG _cell.length_a 96.11 _cell.length_b 96.11 _cell.length_c 113.244 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JHG _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_555 x,x-y,-z+1/3 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 0 0 37.748 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O THR 5 A THR 0 1_555 F NA NA . A NA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc2 A O PHE 64 A PHE 59 1_555 D NA NA . A NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc3 A O GLY 66 A GLY 61 1_555 D NA NA . A NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc4 A O SER 70 A SER 65 1_555 E NA NA . A NA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc5 A OG1 THR 71 A THR 66 1_555 E NA NA . A NA 204 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.668 ? metalc ? metalc6 A O GLY 129 A GLY 124 1_555 F NA NA . A NA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? metalc ? metalc7 D NA NA . A NA 203 1_555 G O HOH . A HOH 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc8 D NA NA . A NA 203 1_555 G O HOH . A HOH 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.925 ? metalc ? metalc9 D NA NA . A NA 203 1_555 G O HOH . A HOH 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc10 D NA NA . A NA 203 1_555 G O HOH . A HOH 348 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc11 E NA NA . A NA 204 1_555 G O HOH . A HOH 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc12 E NA NA . A NA 204 1_555 G O HOH . A HOH 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc13 F NA NA . A NA 205 1_555 G O HOH . A HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc14 F NA NA . A NA 205 1_555 G O HOH . A HOH 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.6 ? # _chem_comp.formula 'C3 H2 O4 -2' _chem_comp.formula_weight 102.046 _chem_comp.id MLI _chem_comp.mon_nstd_flag . _chem_comp.name 'MALONATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MLI sing 237 n n C1 C3 MLI sing 238 n n C1 H11 MLI sing 239 n n C1 H12 MLI sing 240 n n C2 O6 MLI doub 241 n n C2 O7 MLI sing 242 n n C3 O8 MLI doub 243 n n C3 O9 MLI sing 244 n n # _atom_sites.entry_id 4JHG _atom_sites.fract_transf_matrix[1][1] 0.010405 _atom_sites.fract_transf_matrix[1][2] 0.006007 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012014 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00883 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZEA A 1 201 164 ZEA ZEA . C 3 MLI A 1 202 165 MLI MLI . D 4 NA A 1 203 166 NA NA . E 4 NA A 1 204 1 NA NA . F 4 NA A 1 205 1 NA NA . G 5 HOH A 1 301 167 HOH HOH . G 5 HOH A 2 302 168 HOH HOH . G 5 HOH A 3 303 169 HOH HOH . G 5 HOH A 4 304 170 HOH HOH . G 5 HOH A 5 305 171 HOH HOH . G 5 HOH A 6 306 172 HOH HOH . G 5 HOH A 7 307 173 HOH HOH . G 5 HOH A 8 308 174 HOH HOH . G 5 HOH A 9 309 175 HOH HOH . G 5 HOH A 10 310 176 HOH HOH . G 5 HOH A 11 311 177 HOH HOH . G 5 HOH A 12 312 178 HOH HOH . G 5 HOH A 13 313 179 HOH HOH . G 5 HOH A 14 314 180 HOH HOH . G 5 HOH A 15 315 181 HOH HOH . G 5 HOH A 16 316 182 HOH HOH . G 5 HOH A 17 317 183 HOH HOH . G 5 HOH A 18 318 184 HOH HOH . G 5 HOH A 19 319 185 HOH HOH . G 5 HOH A 20 320 186 HOH HOH . G 5 HOH A 21 321 187 HOH HOH . G 5 HOH A 22 322 188 HOH HOH . G 5 HOH A 23 323 189 HOH HOH . G 5 HOH A 24 324 190 HOH HOH . G 5 HOH A 25 325 191 HOH HOH . G 5 HOH A 26 326 192 HOH HOH . G 5 HOH A 27 327 193 HOH HOH . G 5 HOH A 28 328 194 HOH HOH . G 5 HOH A 29 329 195 HOH HOH . G 5 HOH A 30 330 196 HOH HOH . G 5 HOH A 31 331 197 HOH HOH . G 5 HOH A 32 332 198 HOH HOH . G 5 HOH A 33 333 199 HOH HOH . G 5 HOH A 34 334 200 HOH HOH . G 5 HOH A 35 335 201 HOH HOH . G 5 HOH A 36 336 202 HOH HOH . G 5 HOH A 37 337 203 HOH HOH . G 5 HOH A 38 338 204 HOH HOH . G 5 HOH A 39 339 205 HOH HOH . G 5 HOH A 40 340 206 HOH HOH . G 5 HOH A 41 341 207 HOH HOH . G 5 HOH A 42 342 208 HOH HOH . G 5 HOH A 43 343 209 HOH HOH . G 5 HOH A 44 344 210 HOH HOH . G 5 HOH A 45 345 211 HOH HOH . G 5 HOH A 46 346 212 HOH HOH . G 5 HOH A 47 347 213 HOH HOH . G 5 HOH A 48 348 214 HOH HOH . G 5 HOH A 49 349 215 HOH HOH . G 5 HOH A 50 350 216 HOH HOH . G 5 HOH A 51 351 217 HOH HOH . G 5 HOH A 52 352 218 HOH HOH . G 5 HOH A 53 353 219 HOH HOH . G 5 HOH A 54 354 220 HOH HOH . G 5 HOH A 55 355 221 HOH HOH . G 5 HOH A 56 356 222 HOH HOH . G 5 HOH A 57 357 223 HOH HOH . G 5 HOH A 58 358 224 HOH HOH . G 5 HOH A 59 359 225 HOH HOH . G 5 HOH A 60 360 226 HOH HOH . G 5 HOH A 61 361 227 HOH HOH . G 5 HOH A 62 362 228 HOH HOH . G 5 HOH A 63 363 229 HOH HOH . G 5 HOH A 64 364 230 HOH HOH . G 5 HOH A 65 365 231 HOH HOH . G 5 HOH A 66 366 232 HOH HOH . G 5 HOH A 67 367 233 HOH HOH . G 5 HOH A 68 368 234 HOH HOH . G 5 HOH A 69 369 235 HOH HOH . G 5 HOH A 70 370 236 HOH HOH . G 5 HOH A 71 371 237 HOH HOH . G 5 HOH A 72 372 238 HOH HOH . G 5 HOH A 73 373 239 HOH HOH . G 5 HOH A 74 374 241 HOH HOH . G 5 HOH A 75 375 242 HOH HOH . G 5 HOH A 76 376 243 HOH HOH . G 5 HOH A 77 377 244 HOH HOH . G 5 HOH A 78 378 245 HOH HOH . G 5 HOH A 79 379 246 HOH HOH . G 5 HOH A 80 380 247 HOH HOH . G 5 HOH A 81 381 248 HOH HOH . G 5 HOH A 82 382 249 HOH HOH . G 5 HOH A 83 383 250 HOH HOH . G 5 HOH A 84 384 251 HOH HOH . G 5 HOH A 85 385 252 HOH HOH . G 5 HOH A 86 386 253 HOH HOH . G 5 HOH A 87 387 254 HOH HOH . G 5 HOH A 88 388 255 HOH HOH . G 5 HOH A 89 389 256 HOH HOH . G 5 HOH A 90 390 257 HOH HOH . G 5 HOH A 91 391 258 HOH HOH . G 5 HOH A 92 392 259 HOH HOH . G 5 HOH A 93 393 260 HOH HOH . G 5 HOH A 94 394 261 HOH HOH . G 5 HOH A 95 395 262 HOH HOH . G 5 HOH A 96 396 263 HOH HOH . G 5 HOH A 97 397 264 HOH HOH . G 5 HOH A 98 398 265 HOH HOH . G 5 HOH A 99 399 266 HOH HOH . G 5 HOH A 100 400 267 HOH HOH . G 5 HOH A 101 401 268 HOH HOH . G 5 HOH A 102 402 269 HOH HOH . G 5 HOH A 103 403 270 HOH HOH . G 5 HOH A 104 404 271 HOH HOH . G 5 HOH A 105 405 272 HOH HOH . G 5 HOH A 106 406 273 HOH HOH . G 5 HOH A 107 407 274 HOH HOH . G 5 HOH A 108 408 275 HOH HOH . G 5 HOH A 109 409 277 HOH HOH . G 5 HOH A 110 410 278 HOH HOH . G 5 HOH A 111 411 279 HOH HOH . G 5 HOH A 112 412 280 HOH HOH . G 5 HOH A 113 413 281 HOH HOH . G 5 HOH A 114 414 282 HOH HOH . G 5 HOH A 115 415 283 HOH HOH . G 5 HOH A 116 416 284 HOH HOH . G 5 HOH A 117 417 286 HOH HOH . G 5 HOH A 118 418 289 HOH HOH . G 5 HOH A 119 419 290 HOH HOH . G 5 HOH A 120 420 1 HOH HOH . G 5 HOH A 121 421 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLI . . . C 3 50.543 18.285 16.717 0.8 55.99 ? C1 MLI 202 A 1 HETATM 2 C C2 MLI . . . C 3 49.28 17.504 16.595 0.8 56.66 ? C2 MLI 202 A 1 HETATM 3 C C3 MLI . . . C 3 50.75 19.326 15.664 0.8 71.36 ? C3 MLI 202 A 1 HETATM 4 O O6 MLI . . . C 3 49.043 16.781 15.557 0.8 37.34 ? O6 MLI 202 A 1 HETATM 5 O O7 MLI . . . C 3 48.45 17.591 17.552 0.8 45.94 ? O7 MLI 202 A 1 HETATM 6 O O8 MLI . . . C 3 51.883 19.481 15.125 0.8 94.36 ? O8 MLI 202 A 1 HETATM 7 O O9 MLI . . . C 3 49.774 20.038 15.3 0.8 45.87 ? O9 MLI 202 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 228 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 7 #