data_4JHH
#
_model_server_result.job_id            1S9dNfBkxIyBKhQWWT30tA 
_model_server_result.datetime_utc      '2024-11-24 08:06:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4jhh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":202}' 
#
_entry.id    4JHH 
#
_exptl.entry_id    4JHH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              102.046 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MALONATE ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4JHH 
_cell.length_a            96.415 
_cell.length_b            96.415 
_cell.length_c            113.407 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4JHH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        180 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 62 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 12_555 x,x-y,-z+1/3 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 0 0 37.802333 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O PHE 64 A PHE 59 1_555 D NA NA . A NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? 
metalc ? metalc2 A O GLY 66 A GLY 61 1_555 D NA NA . A NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? 
metalc ? metalc3 D NA NA . A NA 203 1_555 E O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? 
metalc ? metalc4 D NA NA . A NA 203 1_555 E O HOH . A HOH 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.707 ? 
metalc ? metalc5 D NA NA . A NA 203 1_555 E O HOH . A HOH 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? 
#
_chem_comp.formula           'C3 H2 O4 -2' 
_chem_comp.formula_weight    102.046 
_chem_comp.id                MLI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MALONATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MLI sing 264 n n 
C1 C3 MLI sing 265 n n 
C1 H11 MLI sing 266 n n 
C1 H12 MLI sing 267 n n 
C2 O6 MLI doub 268 n n 
C2 O7 MLI sing 269 n n 
C3 O8 MLI doub 270 n n 
C3 O9 MLI sing 271 n n 
#
_atom_sites.entry_id                     4JHH 
_atom_sites.fract_transf_matrix[1][1]    0.010372 
_atom_sites.fract_transf_matrix[1][2]    0.005988 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011976 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008818 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 H35 A 1 201 1 H35 H35 . 
C 3 MLI A 1 202 3 MLI MLI . 
D 4 NA A 1 203 1 NA NA . 
E 5 HOH A 1 301 1 HOH HOH . 
E 5 HOH A 2 302 2 HOH HOH . 
E 5 HOH A 3 303 3 HOH HOH . 
E 5 HOH A 4 304 4 HOH HOH . 
E 5 HOH A 5 305 5 HOH HOH . 
E 5 HOH A 6 306 6 HOH HOH . 
E 5 HOH A 7 307 7 HOH HOH . 
E 5 HOH A 8 308 8 HOH HOH . 
E 5 HOH A 9 309 9 HOH HOH . 
E 5 HOH A 10 310 10 HOH HOH . 
E 5 HOH A 11 311 11 HOH HOH . 
E 5 HOH A 12 312 12 HOH HOH . 
E 5 HOH A 13 313 13 HOH HOH . 
E 5 HOH A 14 314 14 HOH HOH . 
E 5 HOH A 15 315 15 HOH HOH . 
E 5 HOH A 16 316 17 HOH HOH . 
E 5 HOH A 17 317 18 HOH HOH . 
E 5 HOH A 18 318 19 HOH HOH . 
E 5 HOH A 19 319 20 HOH HOH . 
E 5 HOH A 20 320 22 HOH HOH . 
E 5 HOH A 21 321 23 HOH HOH . 
E 5 HOH A 22 322 24 HOH HOH . 
E 5 HOH A 23 323 25 HOH HOH . 
E 5 HOH A 24 324 26 HOH HOH . 
E 5 HOH A 25 325 27 HOH HOH . 
E 5 HOH A 26 326 28 HOH HOH . 
E 5 HOH A 27 327 29 HOH HOH . 
E 5 HOH A 28 328 31 HOH HOH . 
E 5 HOH A 29 329 32 HOH HOH . 
E 5 HOH A 30 330 33 HOH HOH . 
E 5 HOH A 31 331 34 HOH HOH . 
E 5 HOH A 32 332 35 HOH HOH . 
E 5 HOH A 33 333 36 HOH HOH . 
E 5 HOH A 34 334 37 HOH HOH . 
E 5 HOH A 35 335 38 HOH HOH . 
E 5 HOH A 36 336 39 HOH HOH . 
E 5 HOH A 37 337 40 HOH HOH . 
E 5 HOH A 38 338 41 HOH HOH . 
E 5 HOH A 39 339 42 HOH HOH . 
E 5 HOH A 40 340 45 HOH HOH . 
E 5 HOH A 41 341 46 HOH HOH . 
E 5 HOH A 42 342 47 HOH HOH . 
E 5 HOH A 43 343 48 HOH HOH . 
E 5 HOH A 44 344 50 HOH HOH . 
E 5 HOH A 45 345 52 HOH HOH . 
E 5 HOH A 46 346 53 HOH HOH . 
E 5 HOH A 47 347 54 HOH HOH . 
E 5 HOH A 48 348 55 HOH HOH . 
E 5 HOH A 49 349 56 HOH HOH . 
E 5 HOH A 50 350 57 HOH HOH . 
E 5 HOH A 51 351 58 HOH HOH . 
E 5 HOH A 52 352 59 HOH HOH . 
E 5 HOH A 53 353 61 HOH HOH . 
E 5 HOH A 54 354 64 HOH HOH . 
E 5 HOH A 55 355 68 HOH HOH . 
E 5 HOH A 56 356 69 HOH HOH . 
E 5 HOH A 57 357 70 HOH HOH . 
E 5 HOH A 58 358 71 HOH HOH . 
E 5 HOH A 59 359 74 HOH HOH . 
E 5 HOH A 60 360 75 HOH HOH . 
E 5 HOH A 61 361 78 HOH HOH . 
E 5 HOH A 62 362 79 HOH HOH . 
E 5 HOH A 63 363 80 HOH HOH . 
E 5 HOH A 64 364 81 HOH HOH . 
E 5 HOH A 65 365 82 HOH HOH . 
E 5 HOH A 66 366 83 HOH HOH . 
E 5 HOH A 67 367 85 HOH HOH . 
E 5 HOH A 68 368 86 HOH HOH . 
E 5 HOH A 69 369 87 HOH HOH . 
E 5 HOH A 70 370 88 HOH HOH . 
E 5 HOH A 71 371 89 HOH HOH . 
E 5 HOH A 72 372 92 HOH HOH . 
E 5 HOH A 73 373 93 HOH HOH . 
E 5 HOH A 74 374 94 HOH HOH . 
E 5 HOH A 75 375 95 HOH HOH . 
E 5 HOH A 76 376 96 HOH HOH . 
E 5 HOH A 77 377 98 HOH HOH . 
E 5 HOH A 78 378 99 HOH HOH . 
E 5 HOH A 79 379 100 HOH HOH . 
E 5 HOH A 80 380 101 HOH HOH . 
E 5 HOH A 81 381 103 HOH HOH . 
E 5 HOH A 82 382 104 HOH HOH . 
E 5 HOH A 83 383 105 HOH HOH . 
E 5 HOH A 84 384 107 HOH HOH . 
E 5 HOH A 85 385 108 HOH HOH . 
E 5 HOH A 86 386 109 HOH HOH . 
E 5 HOH A 87 387 110 HOH HOH . 
E 5 HOH A 88 388 111 HOH HOH . 
E 5 HOH A 89 389 112 HOH HOH . 
E 5 HOH A 90 390 114 HOH HOH . 
E 5 HOH A 91 391 115 HOH HOH . 
E 5 HOH A 92 392 117 HOH HOH . 
E 5 HOH A 93 393 118 HOH HOH . 
E 5 HOH A 94 394 119 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MLI . . . C 3 50.48 18.363 16.526 0.5 45.02 ? C1 MLI 202 A 1 
HETATM 2 C C2 MLI . . . C 3 49.274 17.47 16.624 0.5 40.54 ? C2 MLI 202 A 1 
HETATM 3 C C3 MLI . . . C 3 50.344 19.419 15.465 0.5 49.38 ? C3 MLI 202 A 1 
HETATM 4 O O6 MLI . . . C 3 49.015 16.622 15.674 0.5 28.92 ? O6 MLI 202 A 1 
HETATM 5 O O7 MLI . . . C 3 48.495 17.592 17.648 0.5 44.68 ? O7 MLI 202 A 1 
HETATM 6 O O8 MLI . . . C 3 50.999 19.319 14.352 0.5 54.8 ? O8 MLI 202 A 1 
HETATM 7 O O9 MLI . . . C 3 49.537 20.388 15.693 0.5 48.32 ? O9 MLI 202 A 1 
#
_model_server_stats.io_time_ms              44 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           7 
#