data_4JHI # _model_server_result.job_id Tkl1mAjREHhWvvpeL_cBxA _model_server_result.datetime_utc '2025-02-16 17:19:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jhi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 4JHI # _exptl.entry_id 4JHI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 225.249 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-BENZYL-9H-PURIN-6-AMINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4JHI _cell.length_a 96.086 _cell.length_b 96.086 _cell.length_c 113.584 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JHI _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_555 x,x-y,-z+1/3 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 0 0 37.861333 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O PHE 63 A PHE 59 1_555 B NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? metalc ? metalc2 A O GLY 65 A GLY 61 1_555 B NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? metalc ? metalc3 B NA NA . A NA 201 1_555 D O HOH . A HOH 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? # _chem_comp.formula 'C12 H11 N5' _chem_comp.formula_weight 225.249 _chem_comp.id EMU _chem_comp.mon_nstd_flag . _chem_comp.name N-BENZYL-9H-PURIN-6-AMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms BENZYLAMINOPURINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EMU sing 83 n y N1 C6 EMU doub 84 n y C2 N3 EMU doub 85 n y C2 H2 EMU sing 86 n n N3 C4 EMU sing 87 n y C4 C5 EMU doub 88 n y C4 N9 EMU sing 89 n y C5 C6 EMU sing 90 n y C5 N7 EMU sing 91 n y C6 N10 EMU sing 92 n n C9 C10 EMU sing 93 n n C9 N10 EMU sing 94 n n C9 H9C1 EMU sing 95 n n C9 H9C2 EMU sing 96 n n N7 C8 EMU doub 97 n y C8 N9 EMU sing 98 n y C8 H8 EMU sing 99 n n N9 H9 EMU sing 100 n n C10 C11 EMU sing 101 n y C10 C15 EMU doub 102 n y C11 C12 EMU doub 103 n y C11 H11 EMU sing 104 n n C12 C13 EMU sing 105 n y C12 H12 EMU sing 106 n n C13 C14 EMU doub 107 n y C13 H13 EMU sing 108 n n C14 C15 EMU sing 109 n y C14 H14 EMU sing 110 n n C15 H15 EMU sing 111 n n N10 H10 EMU sing 112 n n # _atom_sites.entry_id 4JHI _atom_sites.fract_transf_matrix[1][1] 0.010407 _atom_sites.fract_transf_matrix[1][2] 0.006009 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012017 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008804 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 201 1 NA NA . C 3 EMU A 1 202 1 EMU EMU . D 4 HOH A 1 301 1 HOH HOH . D 4 HOH A 2 302 2 HOH HOH . D 4 HOH A 3 303 3 HOH HOH . D 4 HOH A 4 304 4 HOH HOH . D 4 HOH A 5 305 5 HOH HOH . D 4 HOH A 6 306 6 HOH HOH . D 4 HOH A 7 307 7 HOH HOH . D 4 HOH A 8 308 8 HOH HOH . D 4 HOH A 9 309 9 HOH HOH . D 4 HOH A 10 310 10 HOH HOH . D 4 HOH A 11 311 11 HOH HOH . D 4 HOH A 12 312 13 HOH HOH . D 4 HOH A 13 313 14 HOH HOH . D 4 HOH A 14 314 15 HOH HOH . D 4 HOH A 15 315 16 HOH HOH . D 4 HOH A 16 316 17 HOH HOH . D 4 HOH A 17 317 18 HOH HOH . D 4 HOH A 18 318 19 HOH HOH . D 4 HOH A 19 319 21 HOH HOH . D 4 HOH A 20 320 22 HOH HOH . D 4 HOH A 21 321 24 HOH HOH . D 4 HOH A 22 322 26 HOH HOH . D 4 HOH A 23 323 27 HOH HOH . D 4 HOH A 24 324 28 HOH HOH . D 4 HOH A 25 325 30 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EMU . . . C 3 36.121 14.673 10.692 1 26.2 ? N1 EMU 202 A 1 HETATM 2 C C2 EMU . . . C 3 35.749 14.875 9.398 1 30.7 ? C2 EMU 202 A 1 HETATM 3 N N3 EMU . . . C 3 36.166 15.859 8.517 1 25.01 ? N3 EMU 202 A 1 HETATM 4 C C4 EMU . . . C 3 37.034 16.678 9.118 1 30.22 ? C4 EMU 202 A 1 HETATM 5 C C5 EMU . . . C 3 37.511 16.586 10.425 1 25.93 ? C5 EMU 202 A 1 HETATM 6 C C6 EMU . . . C 3 37.027 15.531 11.216 1 25.48 ? C6 EMU 202 A 1 HETATM 7 C C9 EMU . . . C 3 36.581 14.595 13.413 1 30.77 ? C9 EMU 202 A 1 HETATM 8 N N7 EMU . . . C 3 38.395 17.583 10.677 1 32.75 ? N7 EMU 202 A 1 HETATM 9 C C8 EMU . . . C 3 38.452 18.302 9.531 1 27.62 ? C8 EMU 202 A 1 HETATM 10 N N9 EMU . . . C 3 37.657 17.789 8.574 1 25.46 ? N9 EMU 202 A 1 HETATM 11 C C10 EMU . . . C 3 37.442 13.584 14.113 1 36.96 ? C10 EMU 202 A 1 HETATM 12 C C11 EMU . . . C 3 37.022 13.028 15.316 1 31.95 ? C11 EMU 202 A 1 HETATM 13 C C12 EMU . . . C 3 37.851 12.077 15.941 1 31.91 ? C12 EMU 202 A 1 HETATM 14 C C13 EMU . . . C 3 39.08 11.715 15.358 1 30.63 ? C13 EMU 202 A 1 HETATM 15 C C14 EMU . . . C 3 39.482 12.27 14.146 1 32.03 ? C14 EMU 202 A 1 HETATM 16 C C15 EMU . . . C 3 38.656 13.214 13.519 1 29.13 ? C15 EMU 202 A 1 HETATM 17 N N10 EMU . . . C 3 37.452 15.355 12.552 1 25.15 ? N10 EMU 202 A 1 # _model_server_stats.io_time_ms 143 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 572 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 17 #