data_4JHQ # _model_server_result.job_id mEs1ashgp-oUKXPCvpVsIQ _model_server_result.datetime_utc '2024-12-02 02:54:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jhq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 4JHQ # _exptl.entry_id 4JHQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 630.579 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(1,2,3,4,5-eta)-cyclopentadienyl][(1,2,3,4,5-eta)-{6-[(6-{[5-(2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl)pentanoyl]amino}hexanoyl)amino]hexanoyl}cyclopentadienyl]iron' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4JHQ _cell.length_a 69.693 _cell.length_b 78.656 _cell.length_c 42.762 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JHQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4 A CYS 4 1_555 A SG CYS 83 A CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? disulf ? disulf2 B SG CYS 4 B CYS 4 1_555 B SG CYS 83 B CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? covale ? covale1 A ND2 ASN 17 A ASN 17 1_555 D C1 NAG . A NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.534 ? # _chem_comp.formula 'C32 H38 Fe N4 O4 S' _chem_comp.formula_weight 630.579 _chem_comp.id B6F _chem_comp.mon_nstd_flag . _chem_comp.name '[(1,2,3,4,5-eta)-cyclopentadienyl][(1,2,3,4,5-eta)-{6-[(6-{[5-(2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl)pentanoyl]amino}hexanoyl)amino]hexanoyl}cyclopentadienyl]iron' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE C23 B6F sing 70 n n FE C24 B6F sing 71 n n FE C25 B6F sing 72 n n FE C26 B6F sing 73 n n FE C27 B6F sing 74 n n FE C28 B6F sing 75 n n FE C29 B6F sing 76 n n FE C30 B6F sing 77 n n C1 C12 B6F sing 78 n n C1 N31 B6F sing 79 n n N1 C3 B6F sing 80 n n N1 C5 B6F sing 81 n n S1 C2 B6F sing 82 n n S1 C6 B6F sing 83 n n C2 C4 B6F sing 84 n n C2 C7 B6F sing 85 n n N2 C3 B6F sing 86 n n N2 C4 B6F sing 87 n n C3 O3 B6F doub 88 n n N3 C16 B6F sing 89 n n N3 C17 B6F sing 90 n n C4 C5 B6F sing 91 n n C5 C6 B6F sing 92 n n C7 C8 B6F sing 93 n n C8 C9 B6F sing 94 n n C9 C10 B6F sing 95 n n C10 C11 B6F sing 96 n n C11 O11 B6F doub 97 n n C11 N31 B6F sing 98 n n C12 C13 B6F sing 99 n n C13 C14 B6F sing 100 n n C14 C15 B6F sing 101 n n C15 C16 B6F sing 102 n n C16 O16 B6F doub 103 n n C17 C18 B6F sing 104 n n C18 C19 B6F sing 105 n n C19 C20 B6F sing 106 n n C20 C21 B6F sing 107 n n C21 C22 B6F sing 108 n n C22 O22 B6F doub 109 n n C22 C23 B6F sing 110 n n C23 C24 B6F sing 111 n n C23 C27 B6F sing 112 n n C24 C25 B6F doub 113 n n C25 C26 B6F sing 114 n n C26 C27 B6F doub 115 n n C28 C29 B6F sing 116 n n C28 C32 B6F sing 117 n n C29 C30 B6F doub 118 n n C30 C31 B6F sing 119 n n C31 C32 B6F doub 120 n n FE C31 B6F sing 121 n n FE C32 B6F sing 122 n n C1 H1 B6F sing 123 n n C1 H2 B6F sing 124 n n N1 H3 B6F sing 125 n n C2 H4 B6F sing 126 n n N2 H5 B6F sing 127 n n N3 H6 B6F sing 128 n n C4 H7 B6F sing 129 n n C5 H8 B6F sing 130 n n C6 H9 B6F sing 131 n n C6 H10 B6F sing 132 n n C7 H11 B6F sing 133 n n C7 H12 B6F sing 134 n n C8 H13 B6F sing 135 n n C8 H14 B6F sing 136 n n C9 H15 B6F sing 137 n n C9 H16 B6F sing 138 n n C10 H17 B6F sing 139 n n C10 H18 B6F sing 140 n n C12 H19 B6F sing 141 n n C12 H20 B6F sing 142 n n C13 H21 B6F sing 143 n n C13 H22 B6F sing 144 n n C14 H23 B6F sing 145 n n C14 H24 B6F sing 146 n n C15 H25 B6F sing 147 n n C15 H26 B6F sing 148 n n C17 H27 B6F sing 149 n n C17 H28 B6F sing 150 n n C18 H29 B6F sing 151 n n C18 H30 B6F sing 152 n n C19 H31 B6F sing 153 n n C19 H32 B6F sing 154 n n C20 H33 B6F sing 155 n n C20 H34 B6F sing 156 n n C21 H35 B6F sing 157 n n C21 H36 B6F sing 158 n n C28 H37 B6F sing 159 n n N31 H38 B6F sing 160 n n # _atom_sites.entry_id 4JHQ _atom_sites.fract_transf_matrix[1][1] 0.014349 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012714 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023385 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 B6F A 1 201 1 B6F B6F . D 3 NAG A 1 202 1 NAG NAG . E 2 B6F B 1 201 1 B6F B6F . F 3 NAG B 1 202 1 NAG NAG . G 4 HOH A 1 301 1 HOH HOH . G 4 HOH A 2 302 2 HOH HOH . G 4 HOH A 3 303 3 HOH HOH . G 4 HOH A 4 304 4 HOH HOH . G 4 HOH A 5 305 5 HOH HOH . G 4 HOH A 6 306 6 HOH HOH . G 4 HOH A 7 307 7 HOH HOH . G 4 HOH A 8 308 8 HOH HOH . G 4 HOH A 9 309 9 HOH HOH . G 4 HOH A 10 310 10 HOH HOH . G 4 HOH A 11 311 19 HOH HOH . G 4 HOH A 12 312 20 HOH HOH . G 4 HOH A 13 313 21 HOH HOH . G 4 HOH A 14 314 22 HOH HOH . G 4 HOH A 15 315 23 HOH HOH . G 4 HOH A 16 316 24 HOH HOH . G 4 HOH A 17 317 28 HOH HOH . G 4 HOH A 18 318 29 HOH HOH . G 4 HOH A 19 319 34 HOH HOH . G 4 HOH A 20 320 37 HOH HOH . G 4 HOH A 21 321 38 HOH HOH . G 4 HOH A 22 322 41 HOH HOH . G 4 HOH A 23 323 42 HOH HOH . G 4 HOH A 24 324 43 HOH HOH . G 4 HOH A 25 325 44 HOH HOH . G 4 HOH A 26 326 47 HOH HOH . G 4 HOH A 27 327 52 HOH HOH . G 4 HOH A 28 328 53 HOH HOH . G 4 HOH A 29 329 54 HOH HOH . G 4 HOH A 30 330 56 HOH HOH . G 4 HOH A 31 331 58 HOH HOH . G 4 HOH A 32 332 59 HOH HOH . G 4 HOH A 33 333 63 HOH HOH . G 4 HOH A 34 334 64 HOH HOH . G 4 HOH A 35 335 65 HOH HOH . G 4 HOH A 36 336 66 HOH HOH . G 4 HOH A 37 337 67 HOH HOH . G 4 HOH A 38 338 68 HOH HOH . G 4 HOH A 39 339 69 HOH HOH . G 4 HOH A 40 340 71 HOH HOH . G 4 HOH A 41 341 72 HOH HOH . G 4 HOH A 42 342 73 HOH HOH . G 4 HOH A 43 343 77 HOH HOH . G 4 HOH A 44 344 78 HOH HOH . G 4 HOH A 45 345 79 HOH HOH . G 4 HOH A 46 346 80 HOH HOH . G 4 HOH A 47 347 82 HOH HOH . H 4 HOH B 1 301 11 HOH HOH . H 4 HOH B 2 302 12 HOH HOH . H 4 HOH B 3 303 13 HOH HOH . H 4 HOH B 4 304 14 HOH HOH . H 4 HOH B 5 305 15 HOH HOH . H 4 HOH B 6 306 16 HOH HOH . H 4 HOH B 7 307 17 HOH HOH . H 4 HOH B 8 308 18 HOH HOH . H 4 HOH B 9 309 25 HOH HOH . H 4 HOH B 10 310 26 HOH HOH . H 4 HOH B 11 311 27 HOH HOH . H 4 HOH B 12 312 30 HOH HOH . H 4 HOH B 13 313 31 HOH HOH . H 4 HOH B 14 314 32 HOH HOH . H 4 HOH B 15 315 33 HOH HOH . H 4 HOH B 16 316 35 HOH HOH . H 4 HOH B 17 317 36 HOH HOH . H 4 HOH B 18 318 39 HOH HOH . H 4 HOH B 19 319 40 HOH HOH . H 4 HOH B 20 320 45 HOH HOH . H 4 HOH B 21 321 46 HOH HOH . H 4 HOH B 22 322 48 HOH HOH . H 4 HOH B 23 323 49 HOH HOH . H 4 HOH B 24 324 50 HOH HOH . H 4 HOH B 25 325 51 HOH HOH . H 4 HOH B 26 326 55 HOH HOH . H 4 HOH B 27 327 57 HOH HOH . H 4 HOH B 28 328 60 HOH HOH . H 4 HOH B 29 329 61 HOH HOH . H 4 HOH B 30 330 62 HOH HOH . H 4 HOH B 31 331 70 HOH HOH . H 4 HOH B 32 332 74 HOH HOH . H 4 HOH B 33 333 75 HOH HOH . H 4 HOH B 34 334 76 HOH HOH . H 4 HOH B 35 335 81 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE B6F . . . C 2 5.423 1.779 -13.085 0.4 104.8 ? FE B6F 201 A 1 HETATM 2 C C1 B6F . . . C 2 4.026 -6.268 -7.302 1 76.95 ? C1 B6F 201 A 1 HETATM 3 N N1 B6F . . . C 2 -0.337 -12.072 0.143 1 66.8 ? N1 B6F 201 A 1 HETATM 4 S S1 B6F . . . C 2 2.709 -9.912 -0.912 1 58.72 ? S1 B6F 201 A 1 HETATM 5 C C2 B6F . . . C 2 1.721 -10.5 -2.33 1 63.13 ? C2 B6F 201 A 1 HETATM 6 N N2 B6F . . . C 2 0.65 -12.771 -1.651 1 70.37 ? N2 B6F 201 A 1 HETATM 7 C C3 B6F . . . C 2 -0.036 -13.163 -0.558 1 72.21 ? C3 B6F 201 A 1 HETATM 8 N N3 B6F . . . C 2 3.514 0.533 -7.127 0.6 55.8 ? N3 B6F 201 A 1 HETATM 9 O O3 B6F . . . C 2 -0.35 -14.316 -0.218 1 56.35 ? O3 B6F 201 A 1 HETATM 10 C C4 B6F . . . C 2 0.551 -11.323 -1.786 1 63.86 ? C4 B6F 201 A 1 HETATM 11 C C5 B6F . . . C 2 0.295 -10.886 -0.369 1 56.73 ? C5 B6F 201 A 1 HETATM 12 C C6 B6F . . . C 2 1.599 -10.559 0.293 1 48.15 ? C6 B6F 201 A 1 HETATM 13 C C7 B6F . . . C 2 2.356 -11.195 -3.524 1 50.29 ? C7 B6F 201 A 1 HETATM 14 C C8 B6F . . . C 2 3.36 -10.255 -4.141 1 43.03 ? C8 B6F 201 A 1 HETATM 15 C C9 B6F . . . C 2 4.06 -10.773 -5.4 1 50.18 ? C9 B6F 201 A 1 HETATM 16 C C10 B6F . . . C 2 5.027 -9.799 -6.058 1 49.17 ? C10 B6F 201 A 1 HETATM 17 C C11 B6F . . . C 2 4.266 -8.575 -6.548 1 63.47 ? C11 B6F 201 A 1 HETATM 18 O O11 B6F . . . C 2 3.06 -8.649 -6.646 1 63.41 ? O11 B6F 201 A 1 HETATM 19 C C12 B6F . . . C 2 4.602 -4.862 -7.367 1 71.44 ? C12 B6F 201 A 1 HETATM 20 C C13 B6F . . . C 2 4.292 -4.071 -8.677 1 67.27 ? C13 B6F 201 A 1 HETATM 21 C C14 B6F . . . C 2 3.199 -2.975 -8.646 0.6 59.82 ? C14 B6F 201 A 1 HETATM 22 C C15 B6F . . . C 2 3.39 -1.848 -7.623 0.6 58.64 ? C15 B6F 201 A 1 HETATM 23 C C16 B6F . . . C 2 2.999 -0.413 -7.958 0.6 63.54 ? C16 B6F 201 A 1 HETATM 24 O O16 B6F . . . C 2 2.25 -0.158 -8.909 0.6 71.18 ? O16 B6F 201 A 1 HETATM 25 C C17 B6F . . . C 2 3.293 1.974 -7.231 0.6 51.72 ? C17 B6F 201 A 1 HETATM 26 C C18 B6F . . . C 2 3.364 2.516 -8.668 0.4 53.96 ? C18 B6F 201 A 1 HETATM 27 C C19 B6F . . . C 2 2.012 2.442 -9.404 0.4 55.61 ? C19 B6F 201 A 1 HETATM 28 C C20 B6F . . . C 2 1.702 3.609 -10.346 0.4 62.51 ? C20 B6F 201 A 1 HETATM 29 C C21 B6F . . . C 2 2.841 3.909 -11.345 0.4 75.31 ? C21 B6F 201 A 1 HETATM 30 C C22 B6F . . . C 2 2.675 3.299 -12.739 0.4 82.78 ? C22 B6F 201 A 1 HETATM 31 O O22 B6F . . . C 2 1.573 3.06 -13.189 0.4 75.93 ? O22 B6F 201 A 1 HETATM 32 C C23 B6F . . . C 2 3.886 2.992 -13.57 0.4 94.21 ? C23 B6F 201 A 1 HETATM 33 C C24 B6F . . . C 2 4.007 1.956 -14.491 0.4 97.61 ? C24 B6F 201 A 1 HETATM 34 C C25 B6F . . . C 2 5.267 2.016 -15.058 0.4 99.01 ? C25 B6F 201 A 1 HETATM 35 C C26 B6F . . . C 2 5.924 3.088 -14.494 0.4 101.68 ? C26 B6F 201 A 1 HETATM 36 C C27 B6F . . . C 2 5.08 3.691 -13.58 0.4 99.76 ? C27 B6F 201 A 1 HETATM 37 C C28 B6F . . . C 2 5.517 -0.169 -12.648 0.4 98.83 ? C28 B6F 201 A 1 HETATM 38 C C29 B6F . . . C 2 4.734 0.496 -11.727 0.4 99.72 ? C29 B6F 201 A 1 HETATM 39 C C30 B6F . . . C 2 5.522 1.452 -11.118 0.4 100.49 ? C30 B6F 201 A 1 HETATM 40 C C31 B6F . . . C 2 6.777 1.365 -11.669 0.4 99.61 ? C31 B6F 201 A 1 HETATM 41 N N31 B6F . . . C 2 4.923 -7.371 -6.86 1 75.99 ? N31 B6F 201 A 1 HETATM 42 C C32 B6F . . . C 2 6.776 0.369 -12.615 0.4 99.48 ? C32 B6F 201 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 42 #