data_4JIA # _model_server_result.job_id 2MPi5bGTxFfKT9CUiu-idQ _model_server_result.datetime_utc '2024-10-11 00:27:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jia # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1202}' # _entry.id 4JIA # _exptl.entry_id 4JIA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.95 _cell.angle_gamma 90 _cell.entry_id 4JIA _cell.length_a 107.42 _cell.length_b 70.2 _cell.length_c 50.54 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JIA _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 174 A GLU 1006 1_555 A N PTR 175 A PTR 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C PTR 175 A PTR 1007 1_555 A N PTR 176 A PTR 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 A C PTR 176 A PTR 1008 1_555 A N LYS 177 A LYS 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 190 n n C1 C2 GOL sing 191 n n C1 H11 GOL sing 192 n n C1 H12 GOL sing 193 n n O1 HO1 GOL sing 194 n n C2 O2 GOL sing 195 n n C2 C3 GOL sing 196 n n C2 H2 GOL sing 197 n n O2 HO2 GOL sing 198 n n C3 O3 GOL sing 199 n n C3 H31 GOL sing 200 n n C3 H32 GOL sing 201 n n O3 HO3 GOL sing 202 n n # _atom_sites.entry_id 4JIA _atom_sites.fract_transf_matrix[1][1] 0.009309 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001466 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014245 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02003 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 1K3 A 1 1201 1 1K3 XXX . C 3 GOL A 1 1202 181 GOL GOL . D 4 HOH A 1 1301 1 HOH HOH . D 4 HOH A 2 1302 2 HOH HOH . D 4 HOH A 3 1303 3 HOH HOH . D 4 HOH A 4 1304 4 HOH HOH . D 4 HOH A 5 1305 5 HOH HOH . D 4 HOH A 6 1306 6 HOH HOH . D 4 HOH A 7 1307 7 HOH HOH . D 4 HOH A 8 1308 8 HOH HOH . D 4 HOH A 9 1309 9 HOH HOH . D 4 HOH A 10 1310 10 HOH HOH . D 4 HOH A 11 1311 11 HOH HOH . D 4 HOH A 12 1312 12 HOH HOH . D 4 HOH A 13 1313 13 HOH HOH . D 4 HOH A 14 1314 14 HOH HOH . D 4 HOH A 15 1315 15 HOH HOH . D 4 HOH A 16 1316 16 HOH HOH . D 4 HOH A 17 1317 17 HOH HOH . D 4 HOH A 18 1318 18 HOH HOH . D 4 HOH A 19 1319 19 HOH HOH . D 4 HOH A 20 1320 21 HOH HOH . D 4 HOH A 21 1321 22 HOH HOH . D 4 HOH A 22 1322 23 HOH HOH . D 4 HOH A 23 1323 24 HOH HOH . D 4 HOH A 24 1324 25 HOH HOH . D 4 HOH A 25 1325 26 HOH HOH . D 4 HOH A 26 1326 28 HOH HOH . D 4 HOH A 27 1327 29 HOH HOH . D 4 HOH A 28 1328 30 HOH HOH . D 4 HOH A 29 1329 31 HOH HOH . D 4 HOH A 30 1330 32 HOH HOH . D 4 HOH A 31 1331 33 HOH HOH . D 4 HOH A 32 1332 34 HOH HOH . D 4 HOH A 33 1333 35 HOH HOH . D 4 HOH A 34 1334 36 HOH HOH . D 4 HOH A 35 1335 37 HOH HOH . D 4 HOH A 36 1336 38 HOH HOH . D 4 HOH A 37 1337 39 HOH HOH . D 4 HOH A 38 1338 40 HOH HOH . D 4 HOH A 39 1339 42 HOH HOH . D 4 HOH A 40 1340 43 HOH HOH . D 4 HOH A 41 1341 44 HOH HOH . D 4 HOH A 42 1342 45 HOH HOH . D 4 HOH A 43 1343 46 HOH HOH . D 4 HOH A 44 1344 47 HOH HOH . D 4 HOH A 45 1345 48 HOH HOH . D 4 HOH A 46 1346 49 HOH HOH . D 4 HOH A 47 1347 50 HOH HOH . D 4 HOH A 48 1348 51 HOH HOH . D 4 HOH A 49 1349 52 HOH HOH . D 4 HOH A 50 1350 53 HOH HOH . D 4 HOH A 51 1351 54 HOH HOH . D 4 HOH A 52 1352 55 HOH HOH . D 4 HOH A 53 1353 56 HOH HOH . D 4 HOH A 54 1354 58 HOH HOH . D 4 HOH A 55 1355 59 HOH HOH . D 4 HOH A 56 1356 60 HOH HOH . D 4 HOH A 57 1357 61 HOH HOH . D 4 HOH A 58 1358 62 HOH HOH . D 4 HOH A 59 1359 63 HOH HOH . D 4 HOH A 60 1360 64 HOH HOH . D 4 HOH A 61 1361 65 HOH HOH . D 4 HOH A 62 1362 67 HOH HOH . D 4 HOH A 63 1363 68 HOH HOH . D 4 HOH A 64 1364 69 HOH HOH . D 4 HOH A 65 1365 70 HOH HOH . D 4 HOH A 66 1366 71 HOH HOH . D 4 HOH A 67 1367 72 HOH HOH . D 4 HOH A 68 1368 73 HOH HOH . D 4 HOH A 69 1369 74 HOH HOH . D 4 HOH A 70 1370 75 HOH HOH . D 4 HOH A 71 1371 76 HOH HOH . D 4 HOH A 72 1372 77 HOH HOH . D 4 HOH A 73 1373 78 HOH HOH . D 4 HOH A 74 1374 79 HOH HOH . D 4 HOH A 75 1375 80 HOH HOH . D 4 HOH A 76 1376 81 HOH HOH . D 4 HOH A 77 1377 82 HOH HOH . D 4 HOH A 78 1378 83 HOH HOH . D 4 HOH A 79 1379 84 HOH HOH . D 4 HOH A 80 1380 85 HOH HOH . D 4 HOH A 81 1381 86 HOH HOH . D 4 HOH A 82 1382 87 HOH HOH . D 4 HOH A 83 1383 88 HOH HOH . D 4 HOH A 84 1384 89 HOH HOH . D 4 HOH A 85 1385 90 HOH HOH . D 4 HOH A 86 1386 91 HOH HOH . D 4 HOH A 87 1387 92 HOH HOH . D 4 HOH A 88 1388 93 HOH HOH . D 4 HOH A 89 1389 94 HOH HOH . D 4 HOH A 90 1390 95 HOH HOH . D 4 HOH A 91 1391 96 HOH HOH . D 4 HOH A 92 1392 97 HOH HOH . D 4 HOH A 93 1393 98 HOH HOH . D 4 HOH A 94 1394 99 HOH HOH . D 4 HOH A 95 1395 100 HOH HOH . D 4 HOH A 96 1396 101 HOH HOH . D 4 HOH A 97 1397 102 HOH HOH . D 4 HOH A 98 1398 103 HOH HOH . D 4 HOH A 99 1399 104 HOH HOH . D 4 HOH A 100 1400 105 HOH HOH . D 4 HOH A 101 1401 106 HOH HOH . D 4 HOH A 102 1402 107 HOH HOH . D 4 HOH A 103 1403 108 HOH HOH . D 4 HOH A 104 1404 109 HOH HOH . D 4 HOH A 105 1405 110 HOH HOH . D 4 HOH A 106 1406 111 HOH HOH . D 4 HOH A 107 1407 112 HOH HOH . D 4 HOH A 108 1408 113 HOH HOH . D 4 HOH A 109 1409 114 HOH HOH . D 4 HOH A 110 1410 115 HOH HOH . D 4 HOH A 111 1411 116 HOH HOH . D 4 HOH A 112 1412 117 HOH HOH . D 4 HOH A 113 1413 118 HOH HOH . D 4 HOH A 114 1414 119 HOH HOH . D 4 HOH A 115 1415 120 HOH HOH . D 4 HOH A 116 1416 121 HOH HOH . D 4 HOH A 117 1417 122 HOH HOH . D 4 HOH A 118 1418 123 HOH HOH . D 4 HOH A 119 1419 124 HOH HOH . D 4 HOH A 120 1420 125 HOH HOH . D 4 HOH A 121 1421 126 HOH HOH . D 4 HOH A 122 1422 127 HOH HOH . D 4 HOH A 123 1423 128 HOH HOH . D 4 HOH A 124 1424 129 HOH HOH . D 4 HOH A 125 1425 130 HOH HOH . D 4 HOH A 126 1426 132 HOH HOH . D 4 HOH A 127 1427 133 HOH HOH . D 4 HOH A 128 1428 134 HOH HOH . D 4 HOH A 129 1429 135 HOH HOH . D 4 HOH A 130 1430 136 HOH HOH . D 4 HOH A 131 1431 137 HOH HOH . D 4 HOH A 132 1432 138 HOH HOH . D 4 HOH A 133 1433 139 HOH HOH . D 4 HOH A 134 1434 140 HOH HOH . D 4 HOH A 135 1435 142 HOH HOH . D 4 HOH A 136 1436 143 HOH HOH . D 4 HOH A 137 1437 146 HOH HOH . D 4 HOH A 138 1438 147 HOH HOH . D 4 HOH A 139 1439 148 HOH HOH . D 4 HOH A 140 1440 149 HOH HOH . D 4 HOH A 141 1441 150 HOH HOH . D 4 HOH A 142 1442 151 HOH HOH . D 4 HOH A 143 1443 152 HOH HOH . D 4 HOH A 144 1444 154 HOH HOH . D 4 HOH A 145 1445 155 HOH HOH . D 4 HOH A 146 1446 156 HOH HOH . D 4 HOH A 147 1447 157 HOH HOH . D 4 HOH A 148 1448 158 HOH HOH . D 4 HOH A 149 1449 159 HOH HOH . D 4 HOH A 150 1450 160 HOH HOH . D 4 HOH A 151 1451 161 HOH HOH . D 4 HOH A 152 1452 166 HOH HOH . D 4 HOH A 153 1453 168 HOH HOH . D 4 HOH A 154 1454 169 HOH HOH . D 4 HOH A 155 1455 170 HOH HOH . D 4 HOH A 156 1456 172 HOH HOH . D 4 HOH A 157 1457 173 HOH HOH . D 4 HOH A 158 1458 174 HOH HOH . D 4 HOH A 159 1459 175 HOH HOH . D 4 HOH A 160 1460 176 HOH HOH . D 4 HOH A 161 1461 177 HOH HOH . D 4 HOH A 162 1462 179 HOH HOH . D 4 HOH A 163 1463 180 HOH HOH . D 4 HOH A 164 1464 181 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 19.867 -26.874 -20.897 1 22.76 ? C1 GOL 1202 A 1 HETATM 2 O O1 GOL . . . C 3 18.638 -26.367 -21.429 1 24.58 ? O1 GOL 1202 A 1 HETATM 3 C C2 GOL . . . C 3 19.625 -27.364 -19.48 1 22.44 ? C2 GOL 1202 A 1 HETATM 4 O O2 GOL . . . C 3 19.111 -26.291 -18.664 1 21.8 ? O2 GOL 1202 A 1 HETATM 5 C C3 GOL . . . C 3 20.913 -27.973 -18.91 1 21.02 ? C3 GOL 1202 A 1 HETATM 6 O O3 GOL . . . C 3 21.988 -27.026 -18.914 1 18.59 ? O3 GOL 1202 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #